pycom13g12320
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0008158
Physical Location & Seq
Reverse (-)
8527338 .. 8528337
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 735 bp
ATGGTCCTGCCATTCGAGCCACTGACAATCTCGTTTAAGGACGTGCAGTATTATGTTGATACACCTCCGGAAATGAGACAGCATGCTTTCAAGGAGAAAAAGCTTCAGTTGCTTAAAGATATAACAGGAGCATTCAGGCCAGGAATTCTTACTGCACTGATGGGAGTCACTGGGGCTGGAAAAACAACTCTCATGGATGTTCTTTCTGGAAGGAAAACAGGAGGTAGTATCGTGGGAGGTATAAGAATCGGAGGGTACCCCAAGGTCCAGAAGACATTTGCAAGAATATCAGGATACTGCGAGCAGACTGATATACATTCTCCACAGATCACAGTAGAAGAATCACTTATGATCTCAGCTTGGTTGCGGGTGCCACACGAAACTGATCCAGACATAAAAGCTAAATTTGTGGAGGAAGTCATTCAAACGATTGAACTGGAGGATATAAGAGATTCCTTGGTTGGCATTCCTGGACAAACTGGCCTATCTACCGAACAGCGCAAAGGGCTAACAGTTGCAGTGGAGCTTGTATCCAACCCATCAATAATATTTATGGATGAACCCACGTCAGGCTTAGACGCCAGAGCAGCTGCAATTGTCATGCGCGTAGTAAAGAATGTTGTTTCCACAGGAAGGACAACTGTTTGCACAATCCACCAGCCAAGCATTGATATTTTTGAGTCATTTGACGAGTTAATTTTGATGAAAAGGGGAGGCCAAATCATCTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

245

Amino Acids

26.72

Weight (kDa)

5.86

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 38 - 190 2.3e-18 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 2 cut(s) 255, 370
AccII CGCG 1 cut(s) 606
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 1 cut(s) 367
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 2 cut(s) 144, 404
AcuI CTGAAG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 579
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 569, 633
AgsI TTSAA 3 cut(s) 91, 425, 434
AjiI CACGTC 2 cut(s) 43, 567
AjnI CCWGG 2 cut(s) 139, 469
AluBI AGCT 5 cut(s) 103, 359, 401, 526, 590
AluI AGCT 5 cut(s) 103, 359, 401, 526, 590
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 67
AoxI GGCC 3 cut(s) 137, 481, 715
ApeKI GCWGC 2 cut(s) 587, 590
ApoI RAATTY 2 cut(s) 144, 404
Asp700I GAANNNNTTC 1 cut(s) 420
Asp718I GGTACC 1 cut(s) 255
AspLEI GCGC 2 cut(s) 501, 606
AspS9I GGNCC 2 cut(s) 4, 265
AvaII GGWCC 2 cut(s) 4, 265
BanI GGYRCC 2 cut(s) 255, 370
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 577, 599
BccI CCATC 2 cut(s) 154, 547
BciT130I CCWGG 2 cut(s) 141, 471
BciVI GTATCC 2 cut(s) 287, 541
BcoDI GTCTC 1 cut(s) 70
BfuI GTATCC 2 cut(s) 287, 541
BisI GCNGC 2 cut(s) 588, 591
BlsI GCNGC 2 cut(s) 589, 592
Bme1390I CCNGG 2 cut(s) 141, 471
Bme18I GGWCC 2 cut(s) 4, 265
BmgBI CACGTC 2 cut(s) 43, 567
BmgT120I GGNCC 2 cut(s) 4, 265
BmiI GGNNCC 2 cut(s) 257, 372
BmrFI CCNGG 2 cut(s) 141, 471
BmrI ACTGGG 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 579
BsaJI CCNNGG 2 cut(s) 261, 456
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 2 cut(s) 569, 633
Bse1I ACTGG 3 cut(s) 175, 441, 484
BseAI TCCGGA 1 cut(s) 67
BseBI CCWGG 2 cut(s) 141, 471
BseDI CCNNGG 2 cut(s) 261, 456
BseGI GGATG 2 cut(s) 202, 562
BseLI CCNNNNNNNGG 2 cut(s) 569, 633
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 3 cut(s) 175, 441, 484
BseXI GCAGC 2 cut(s) 577, 599
BsgI GTGCAG 2 cut(s) 65, 138
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 3 cut(s) 139, 483, 717
BshNI GGYRCC 2 cut(s) 255, 370
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 569, 633
BsmAI GTCTC 1 cut(s) 70
BsmI GAATGC 2 cut(s) 131, 465
BsnI GGCC 3 cut(s) 139, 483, 717
Bsp13I TCCGGA 1 cut(s) 67
Bsp143I GATC 3 cut(s) 327, 351, 385
BspACI CCGC 1 cut(s) 367
BspANI GGCC 3 cut(s) 139, 483, 717
BspCNI CTCAG 1 cut(s) 368
BspEI TCCGGA 1 cut(s) 67
BspFNI CGCG 1 cut(s) 606
BspLI GGNNCC 2 cut(s) 257, 372
BspPI GGATC 1 cut(s) 380
BspT107I GGYRCC 2 cut(s) 255, 370
BsrI ACTGG 3 cut(s) 175, 441, 484
BssECI CCNNGG 2 cut(s) 261, 456
BssMI GATC 3 cut(s) 327, 351, 385
BssNI GRCGYC 1 cut(s) 579
BssT1I CCWWGG 2 cut(s) 261, 456
Bst2UI CCWGG 2 cut(s) 141, 471
Bst4CI ACNGT 3 cut(s) 334, 514, 643
BstACI GRCGYC 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 84, 302
BstDEI CTNAG 2 cut(s) 355, 574
BstF5I GGATG 2 cut(s) 202, 562
BstFNI CGCG 1 cut(s) 606
BstHHI GCGC 2 cut(s) 501, 606
BstKTI GATC 3 cut(s) 330, 354, 388
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 3 cut(s) 327, 351, 385
BstMWI GCNNNNNNNGC 4 cut(s) 16, 109, 505, 587
BstNI CCWGG 2 cut(s) 141, 471
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 139, 469
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 2 cut(s) 577, 599
BstV2I GAAGAC 1 cut(s) 278
BsuI GTATCC 2 cut(s) 287, 541
BsuRI GGCC 3 cut(s) 139, 483, 717
BtrI CACGTC 2 cut(s) 43, 567
BtsCI GGATG 2 cut(s) 202, 562
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 4 cut(s) 20, 155, 168, 525
Cac8I GCNNGC 2 cut(s) 84, 302
CfoI GCGC 2 cut(s) 501, 606
Cfr13I GGNCC 2 cut(s) 4, 265
CseI GACGC 1 cut(s) 587
Csp6I GTAC 1 cut(s) 256
CviAII CATG 3 cut(s) 83, 193, 601
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 355, 574
DpnI GATC 3 cut(s) 329, 353, 387
DpnII GATC 3 cut(s) 327, 351, 385
Eco130I CCWWGG 2 cut(s) 261, 456
Eco47I GGWCC 2 cut(s) 4, 265
Eco57I CTGAAG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 139, 469
EcoT14I CCWWGG 2 cut(s) 261, 456
ErhI CCWWGG 2 cut(s) 261, 456
FaeI CATG 3 cut(s) 86, 196, 604
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FatI CATG 3 cut(s) 82, 192, 600
FauI CCCGC 1 cut(s) 360
Fnu4HI GCNGC 2 cut(s) 588, 591
FokI GGATG 2 cut(s) 209, 569
Fsp4HI GCNGC 2 cut(s) 588, 591
GlaI GCGC 2 cut(s) 500, 605
GluI GCNGC 2 cut(s) 588, 591
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 3 cut(s) 139, 483, 717
HapII CCGG 1 cut(s) 68
HgaI GACGC 1 cut(s) 587
HhaI GCGC 2 cut(s) 501, 606
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 3 cut(s) 86, 196, 604
Hin6I GCGC 2 cut(s) 499, 604
HinP1I GCGC 2 cut(s) 499, 604
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 5 cut(s) 165, 246, 341, 452, 680
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 6 cut(s) 68, 207, 268, 291, 389, 732
HpyAV CCTTC 2 cut(s) 204, 627
HpyCH4III ACNGT 3 cut(s) 334, 514, 643
HpyCH4IV ACGT 2 cut(s) 42, 566
HpyCH4V TGCA 6 cut(s) 46, 155, 281, 518, 593, 648
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 109, 505, 587
HpyF3I CTNAG 2 cut(s) 355, 574
HpySE526I ACGT 2 cut(s) 42, 566
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 3 cut(s) 86, 196, 604
HspAI GCGC 2 cut(s) 499, 604
Kpn2I TCCGGA 1 cut(s) 67
KpnI GGTACC 1 cut(s) 259
Kzo9I GATC 3 cut(s) 327, 351, 385
LmnI GCTCC 2 cut(s) 128, 523
Lsp1109I GCAGC 2 cut(s) 577, 599
MaeII ACGT 2 cut(s) 42, 566
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 329, 353, 387
MboI GATC 3 cut(s) 327, 351, 385
MboII GAAGA 3 cut(s) 283, 350, 720
MfeI CAATTG 1 cut(s) 594
MluCI AATT 4 cut(s) 144, 404, 594, 696
MlyI GAGTC 2 cut(s) 174, 689
MmeI TCCRAC 1 cut(s) 558
MnlI CCTC 7 cut(s) 75, 215, 230, 245, 406, 433, 707
MroI TCCGGA 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 3 cut(s) 36, 114, 695
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 141, 471
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 2 cut(s) 131, 465
MvaI CCWGG 2 cut(s) 141, 471
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 4 cut(s) 16, 109, 505, 587
NdeII GATC 3 cut(s) 327, 351, 385
NlaIII CATG 3 cut(s) 86, 196, 604
NlaIV GGNNCC 2 cut(s) 257, 372
NmuCI GTSAC 1 cut(s) 166
NspI RCATGY 1 cut(s) 86
PaeI GCATGC 1 cut(s) 86
PctI GAATGC 2 cut(s) 131, 465
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 246, 341, 452
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 2 cut(s) 589, 592
PleI GAGTC 2 cut(s) 173, 688
PpsI GAGTC 2 cut(s) 173, 688
Psp6I CCWGG 2 cut(s) 139, 469
PspGI CCWGG 2 cut(s) 139, 469
PspN4I GGNNCC 2 cut(s) 257, 372
PspPI GGNCC 2 cut(s) 4, 265
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 3 cut(s) 36, 114, 695
SatI GCNGC 2 cut(s) 588, 591
Sau3AI GATC 3 cut(s) 327, 351, 385
Sau96I GGNCC 2 cut(s) 4, 265
SchI GAGTC 2 cut(s) 174, 689
ScrFI CCNGG 2 cut(s) 141, 471
SinI GGWCC 2 cut(s) 4, 265
SphI GCATGC 1 cut(s) 86
Sse9I AATT 4 cut(s) 144, 404, 594, 696
SsiI CCGC 1 cut(s) 367
SspI AATATT 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 139, 469
StyI CCWWGG 2 cut(s) 261, 456
TaaI ACNGT 3 cut(s) 334, 514, 643
TaiI ACGT 2 cut(s) 45, 569
TaqI TCGA 1 cut(s) 15
TasI AATT 4 cut(s) 144, 404, 594, 696
TfiI GAWTC 3 cut(s) 246, 341, 452
Tru1I TTAA 3 cut(s) 36, 114, 695
Tru9I TTAA 3 cut(s) 36, 114, 695
TscAI CASTG 4 cut(s) 27, 162, 175, 525
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 587, 590
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 573, 719
TspRI CASTG 4 cut(s) 27, 162, 175, 525
VpaK11BI GGWCC 2 cut(s) 4, 265
XapI RAATTY 2 cut(s) 144, 404
XceI RCATGY 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.