Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Forward (+)

10043368 .. 10044208

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14030.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATCATGGCCGTACGCCTCTCGATTTCGACCTCAACGCCTTGCTATCCTACGCCTCCGCCAACGTTCATGGCTTTCCCCCCTCTTCCTCCAATTTCACTGTCTCTAAGTTCGGGCATGGACAGTCGAATCCGACTTATAAGATAGAGGCAGGATCGGGGGCGTCTCTGAAACGCTACGTTTTGAGGAAGAAGCCGCCGGGGAAGCTGCTCCAGTCTGCTCATGCCGTCGAGAGAGAGTTCCAGTACGGGTTCTTCAGGCATTGGGTACTCATACACTGGTTCCTGTTCCTAAAGTTTATTGTTTGTGTACCGATTCAAGTGTTATCGGAACCCCCTTTTACATCATGGAGTTTCTGGAAGGGCGCATTTTTCTCGACGCCAAGCTTCCGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

133

Amino Acids

15.04

Weight (kDa)

9.87

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AciI	CCGC	2 cut(s)	60, 197
AclI	AACGTT	1 cut(s)	66
AclWI	GGATC	2 cut(s)	12, 163
AcoI	YGGCCR	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	241
AcyI	GRCGYC	2 cut(s)	164, 380
AfaI	GTAC	4 cut(s)	16, 248, 270, 312
AgsI	TTSAA	1 cut(s)	320
AluBI	AGCT	2 cut(s)	208, 387
AluI	AGCT	2 cut(s)	208, 387
Alw26I	GTCTC	2 cut(s)	109, 171
AlwI	GGATC	2 cut(s)	12, 163
AoxI	GGCC	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	368
AsuC2I	CCSGG	2 cut(s)	201, 392
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BbvI	GCAGC	1 cut(s)	195
BceAI	ACGGC	1 cut(s)	212
BcgI	CGANNNNNNTGC	2 cut(s)	357, 391
BcnI	CCSGG	2 cut(s)	201, 392
BcoDI	GTCTC	2 cut(s)	109, 171
BisI	GCNGC	2 cut(s)	197, 209
BlsI	GCNGC	2 cut(s)	198, 210
Bme1390I	CCNGG	2 cut(s)	201, 392
BmiI	GGNNCC	2 cut(s)	284, 333
BmrFI	CCNGG	2 cut(s)	201, 392
BpmI	CTGGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	201, 392
BsaHI	GRCGYC	2 cut(s)	164, 380
BsaJI	CCNNGG	1 cut(s)	200
Bse1I	ACTGG	3 cut(s)	214, 244, 284
BseDI	CCNNGG	1 cut(s)	200
BseNI	ACTGG	3 cut(s)	214, 244, 284
BseXI	GCAGC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	200, 391
BsiWI	CGTACG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	109, 171
BsmBI	CGTCTC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	4, 155
BspACI	CCGC	2 cut(s)	60, 197
BspANI	GGCC	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	284, 333
BspPI	GGATC	2 cut(s)	12, 163
BsrI	ACTGG	3 cut(s)	214, 244, 284
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	4, 155
BssNI	GRCGYC	2 cut(s)	164, 380
Bst4CI	ACNGT	2 cut(s)	103, 126
Bst6I	CTCTTC	1 cut(s)	91
BstACI	GRCGYC	2 cut(s)	164, 380
BstDEI	CTNAG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	2 cut(s)	7, 158
BstMAI	GTCTC	2 cut(s)	109, 171
BstMBI	GATC	2 cut(s)	4, 155
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	199, 390
BstV1I	GCAGC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	99, 277
CfoI	GCGC	1 cut(s)	368
CseI	GACGC	2 cut(s)	153, 388
Csp6I	GTAC	4 cut(s)	15, 247, 269, 311
CviAII	CATG	5 cut(s)	8, 71, 119, 224, 348
CviJI	RGCY	5 cut(s)	12, 75, 196, 208, 387
CviKI_1	RGCY	5 cut(s)	12, 75, 196, 208, 387
CviQI	GTAC	4 cut(s)	15, 247, 269, 311
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	6, 157
DpnII	GATC	2 cut(s)	4, 155
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	5 cut(s)	11, 74, 122, 227, 351
FaiI	YATR	7 cut(s)	9, 72, 120, 141, 225, 275, 349
FatI	CATG	5 cut(s)	7, 70, 118, 223, 347
Fnu4HI	GCNGC	2 cut(s)	197, 209
Fsp4HI	GCNGC	2 cut(s)	197, 209
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	2 cut(s)	197, 209
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	12
HapII	CCGG	2 cut(s)	200, 391
HgaI	GACGC	2 cut(s)	153, 388
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	2 cut(s)	164, 380
Hin1II	CATG	5 cut(s)	11, 74, 122, 227, 351
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	2 cut(s)	130, 316
HpaII	CCGG	2 cut(s)	200, 391
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	3 cut(s)	135, 171, 331
Hpy188III	TCNNGA	4 cut(s)	23, 232, 358, 376
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	2 cut(s)	233, 382
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	2 cut(s)	103, 126
HpyCH4IV	ACGT	2 cut(s)	66, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	66, 180
Hsp92I	GRCGYC	2 cut(s)	164, 380
Hsp92II	CATG	5 cut(s)	11, 74, 122, 227, 351
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	4, 155
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	8 cut(s)	138, 213, 227, 244, 257, 265, 299, 343
Lsp1109I	GCAGC	1 cut(s)	195
MaeII	ACGT	2 cut(s)	66, 180
MalI	GATC	2 cut(s)	6, 157
MboI	GATC	2 cut(s)	4, 155
MboII	GAAGA	3 cut(s)	78, 202, 247
MluCI	AATT	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	30, 44, 67, 94, 100, 142, 180
MspI	CCGG	2 cut(s)	200, 391
MspR9I	CCNGG	2 cut(s)	201, 392
MwoI	GCNNNNNNNGC	1 cut(s)	205
NciI	CCSGG	2 cut(s)	201, 392
NdeII	GATC	2 cut(s)	4, 155
NlaIII	CATG	5 cut(s)	11, 74, 122, 227, 351
NlaIV	GGNNCC	2 cut(s)	284, 333
PfeI	GAWTC	2 cut(s)	130, 316
Pfl23II	CGTACG	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	198, 210
PsiI	TTATAA	1 cut(s)	141
Psp1406I	AACGTT	1 cut(s)	66
PspLI	CGTACG	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	284, 333
RsaI	GTAC	4 cut(s)	16, 248, 270, 312
RsaNI	GTAC	4 cut(s)	15, 247, 269, 311
SatI	GCNGC	2 cut(s)	197, 209
Sau3AI	GATC	2 cut(s)	4, 155
ScrFI	CCNGG	2 cut(s)	201, 392
SetI	ASST	5 cut(s)	36, 69, 183, 210, 389
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	60, 197
StyD4I	CCNGG	2 cut(s)	199, 390
TaaI	ACNGT	2 cut(s)	103, 126
TaiI	ACGT	2 cut(s)	69, 183
TaqI	TCGA	5 cut(s)	24, 30, 128, 231, 377
TasI	AATT	1 cut(s)	94
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	2 cut(s)	130, 316
TscAI	CASTG	2 cut(s)	106, 284
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	106, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.