Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002752.1

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Forward (+)

8585 .. 8958

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002752.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atggctaacgagctcgacctcgacgctttgctctgctatgccgccgctaacgtcactggctttcctccctcgccatccaatttcaccttctctaagttcgagcatggacaatcgaatccgacttatctgatgcaagtaggatccagagcgtcagtgaaacgctacgttttgagaaagaagccagcggggaagttgcttcagtctactcatgctgtggagagagaattccaagttaacccatctaactctgttatctatctctctctctctcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

91

Amino Acids

10.07

Weight (kDa)

9.25

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	203
AciI	CCGC	3 cut(s)	42, 45, 185
AclWI	GGATC	2 cut(s)	135, 148
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	182
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw21I	GWGCWC	1 cut(s)	15
AlwI	GGATC	2 cut(s)	135, 148
ApoI	RAATTY	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BccI	CCATC	2 cut(s)	82, 247
BisI	GCNGC	2 cut(s)	42, 45
BlsI	GCNGC	2 cut(s)	43, 46
BmiI	GGNNCC	1 cut(s)	142
BmsI	GCATC	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	3 cut(s)	42, 45, 185
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	2 cut(s)	135, 148
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	74
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	3 cut(s)	54, 159, 271
Cac8I	GCNNGC	1 cut(s)	183
CseI	GACGC	2 cut(s)	32, 138
CviAII	CATG	2 cut(s)	104, 209
CviJI	RGCY	4 cut(s)	5, 13, 60, 181
CviKI_1	RGCY	4 cut(s)	5, 13, 60, 181
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	2 cut(s)	107, 212
FaiI	YATR	3 cut(s)	39, 105, 210
FatI	CATG	2 cut(s)	103, 208
FauI	CCCGC	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	42, 45
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	42, 45
GluI	GCNGC	2 cut(s)	42, 45
HgaI	GACGC	2 cut(s)	32, 138
Hin1II	CATG	2 cut(s)	107, 212
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	115
HpaI	GTTAAC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	204, 235
Hpy188I	TCNGA	2 cut(s)	120, 129
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	2 cut(s)	204, 235
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	97
HpyCH4IV	ACGT	2 cut(s)	51, 165
HpyCH4V	TGCA	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	2 cut(s)	51, 165
Hsp92II	CATG	2 cut(s)	107, 212
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	140
LpnPI	CCDG	3 cut(s)	42, 157, 195
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	2 cut(s)	51, 165
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	79, 224
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	3 cut(s)	29, 75, 79
MseI	TTAA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	185
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	107, 212
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	43, 46
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	42, 45
Sau3AI	GATC	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	5 cut(s)	15, 21, 54, 89, 168
SfaNI	GCATC	1 cut(s)	120
Sse9I	AATT	2 cut(s)	79, 224
SsiI	CCGC	3 cut(s)	42, 45, 185
SstI	GAGCTC	1 cut(s)	15
TaiI	ACGT	2 cut(s)	54, 168
TaqI	TCGA	4 cut(s)	15, 21, 99, 113
TasI	AATT	2 cut(s)	79, 224
TauI	GCSGC	2 cut(s)	44, 47
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	61, 159
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspRI	CASTG	2 cut(s)	61, 159
XapI	RAATTY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.