Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Forward (+)

68684066 .. 68684681

Gene Structure 616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTTAACGAGCTCAACCTCGACACTTTGCTCCGCTACGCAGTCACTAACGTCATCGGCTTTCCTCCCTCGCCGTCCAATTTCACCTTCTCTAAGTTCGAGCATGGACAATCGAATCCGACTTATCTGATGCAAGTAGGATCCGGAGCGTTGGTGAAATGCTATGTTTTGAGAAAGAAGCCGCCGGGGAAGTTGCTTCAGTCTGCTCAAGTTGTGGAGAGAGAATTCCAGCTACACGTTCTTCAAGCATTGGGTAATCATACTGTAGTTTCAGTTCTGAAAGTTTTTTGTTTGTGTACTGATCCAAGTGTGATTGGAACCGCTTTTTACATCATGGATTTTTTAGAATTAATGGCGCATTTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

122

Amino Acids

13.61

Weight (kDa)

7.7

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	30 - 116	1.6e-10	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	3 cut(s)	34, 182, 321
AclWI	GGATC	3 cut(s)	135, 148, 296
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	2 cut(s)	13, 232
AluI	AGCT	2 cut(s)	13, 232
Alw21I	GWGCWC	1 cut(s)	15
AlwI	GGATC	3 cut(s)	135, 148, 296
Aor13HI	TCCGGA	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	76, 166
BamHI	GGATCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	142, 319
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
BseAI	TCCGGA	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	144, 185
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	140, 301
BspACI	CCGC	3 cut(s)	34, 182, 321
BspEI	TCCGGA	1 cut(s)	143
BspLI	GGNNCC	2 cut(s)	142, 319
BspPI	GGATC	3 cut(s)	135, 148, 296
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	140, 301
Bst4CI	ACNGT	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	2 cut(s)	143, 304
BstMBI	GATC	2 cut(s)	140, 301
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
CfoI	GCGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	2 cut(s)	104, 334
CviJI	RGCY	4 cut(s)	13, 60, 181, 232
CviKI_1	RGCY	4 cut(s)	13, 60, 181, 232
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	142, 303
DpnII	GATC	2 cut(s)	140, 301
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	2 cut(s)	107, 337
FaiI	YATR	4 cut(s)	105, 165, 261, 335
FatI	CATG	2 cut(s)	103, 333
Fnu4HI	GCNGC	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	182
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	182
HapII	CCGG	2 cut(s)	144, 185
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	107, 337
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	115
HpaI	GTTAAC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	144, 185
HphI	GGTGA	2 cut(s)	76, 166
Hpy166II	GTNNAC	2 cut(s)	7, 297
Hpy188I	TCNGA	3 cut(s)	120, 129, 279
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	2 cut(s)	7, 297
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	2 cut(s)	51, 237
HpyCH4V	TGCA	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	2 cut(s)	51, 237
Hsp92II	CATG	2 cut(s)	107, 337
HspAI	GCGC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	143
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	140, 301
LmnI	GCTCC	2 cut(s)	36, 146
LpnPI	CCDG	3 cut(s)	157, 198, 242
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	2 cut(s)	51, 237
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	142, 303
MboI	GATC	2 cut(s)	140, 301
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	79, 224, 347
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	3 cut(s)	29, 75, 79
MroI	TCCGGA	1 cut(s)	143
MseI	TTAA	3 cut(s)	6, 350, 367
MspI	CCGG	2 cut(s)	144, 185
MspR9I	CCNGG	1 cut(s)	186
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	2 cut(s)	140, 301
NlaIII	CATG	2 cut(s)	107, 337
NlaIV	GGNNCC	2 cut(s)	142, 319
NmuCI	GTSAC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	142, 319
PsrI	GAACNNNNNNTAC	2 cut(s)	258, 290
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	6, 350, 367
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	2 cut(s)	140, 301
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	6 cut(s)	15, 21, 54, 89, 234, 240
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	3 cut(s)	79, 224, 347
SsiI	CCGC	3 cut(s)	34, 182, 321
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	2 cut(s)	54, 240
TaqI	TCGA	3 cut(s)	21, 99, 113
TasI	AATT	3 cut(s)	79, 224, 347
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	3 cut(s)	6, 350, 367
Tru9I	TTAA	3 cut(s)	6, 350, 367
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
VspI	ATTAAT	1 cut(s)	350
XapI	RAATTY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.