Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Reverse (-)

55796647 .. 55799761

Gene Structure 3115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG246200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGGTAATGCTTCAGGAGGTGAGAGTGCCCAGCATGCAGGTGACAAAGCTAATTTTCTTATAGATTATGCATGGGCATTTGTTAGACGAGAATCTGTGCTTCCTGAGCATCCTCCATCAGGGTCTTTTGTTGCTCAAAACTGCTTGAAAAGATTGGGACAAGAGAGTGAAGATCAAGGATTTTCAGAAGGGGGAGGAAAGTTTGTCCCCAGTAAAAGGATTTTAGAATTGAGAAAAAGGTTGGTCAAGTTCATGGAAGATCACATATATCCCATGGAAAAAGAATTCTACAAACTTGCTCAGTCTACCTCACGTTGGACAGTGCATCCAGAGGAGGAGAAGTTAAAGGAGCTCGCAAAGAAAGAAGGCCTATGGAACTTATTTATACCTTTTGATAGTGCTGCCAGGGCAAAAAAAATAATTTTTGATGGGACCAATCAACTTCAGTCAGATGATACCTACAATCAGTTATTGGGCGCTGGTCTTTCAAACCTTGAATACGGATATCTTTGTGAGATCATGGGTCGTTCTATTTGGGCTCCACAAGTGTTCAACTGTGGTGCACCTGATACAGGAAATATGGAGGTCTTGTTGCGTTATGGGAACAAAGAACAACTACTTGAATGGCTTATTCCTTTACTTGAGGGGAGAATCCGGTCAGGATTTGCAATGACAGAACCCCAAGTTGCATCCTCTGATGCAACTAACATCGAGTGTTCTATTAGTAGACAAGGAGATTCATATATTATCAATGGAAAAAAATGGTGGACAAGTGGGGCTATGGATCCAAGATGTAGACTTCTTATAGTCATGGGAAAAACCGACTTCAATGCTGCTATGCATAAACAACAGTCTATGATCTTAGTTGATATCCGGACTCCAGGTGTACATATAAAGAGAGCACTTACAGTTTTTGGCTTTGATGATGCACCTCATGGGCATGCAGAAGTTTTATTTGACAATGTACGTGTCCCAGCAAAGAATATTCTACTGGGAGAAGGACGTGGGTTTGAGATTGCACAGGGTAGGTTAGGCCCAGGAAGGTTACACCATTGCATGAGACTGATAGGAGCTGCTGAGCGAGGCATGGAGATAATGGCTGAAAGGGCTCTTAGTAGAAGAGTTTTTGGGAAGTTGATTGCTGAACAAGGCTCTTTTCGTTCTGATATAGCAAAGTGTCGAATAGAGCTAGAGAAAACCAGATTGTTGGTTCTGGAGGCAGCCGACCAGCTTGATAGACTTGGAAACAAAAAGGCCCGCGGAACTCTAGCAATGGCAAAGGTAGCAACCCCAAACATGGCTCTGATGGTGCTGGACATGGCAATGCAAGTCCATGGCGGCGCTGGCTTGTCTTCTGACACTTGTCTGGCTCATCTTTGGGCCACAGCAAGAACATTGAGAATAGCAGATGGTCCGGATGAAGTTCACTTGGGTACCATTGCCAAGTTAGAACTACAGAGAGCTAAAGCTAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

492

Amino Acids

54.63

Weight (kDa)

8.64

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_M	PF02770	221 - 322	3.1e-18	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	334 - 482	1.5e-35	Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_2	PF08028	350 - 460	1.4e-06	Acyl-CoA dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	29
Acc65I	GGTACC	1 cut(s)	1433
AccB1I	GGYRCC	1 cut(s)	1433
AccI	GTMKAC	3 cut(s)	305, 727, 796
AccII	CGCG	1 cut(s)	1260
AccIII	TCCGGA	2 cut(s)	873, 1414
AciI	CCGC	3 cut(s)	1258, 1260, 1338
AclWI	GGATC	2 cut(s)	779, 792
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	3 cut(s)	888, 966, 1435
AfiI	CCNNNNNNNGG	5 cut(s)	119, 216, 315, 572, 1297
AflIII	ACRYGT	1 cut(s)	967
AgsI	TTSAA	6 cut(s)	148, 489, 497, 553, 623, 829
AjiI	CACGTC	1 cut(s)	1004
AjnI	CCWGG	3 cut(s)	404, 880, 1036
AluBI	AGCT	7 cut(s)	50, 352, 1073, 1189, 1231, 1463, 1469
AluI	AGCT	7 cut(s)	50, 352, 1073, 1189, 1231, 1463, 1469
Alw21I	GWGCWC	3 cut(s)	354, 565, 904
Alw26I	GTCTC	1 cut(s)	1054
Alw44I	GTGCAC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	779, 792
Aor13HI	TCCGGA	2 cut(s)	873, 1414
AoxI	GGCC	4 cut(s)	367, 1033, 1254, 1380
ApaLI	GTGCAC	1 cut(s)	561
ApeKI	GCWGC	4 cut(s)	401, 833, 1073, 1220
ApoI	RAATTY	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	1433
AspLEI	GCGC	2 cut(s)	479, 1343
AspS9I	GGNCC	5 cut(s)	432, 1034, 1255, 1380, 1412
AsuHPI	GGTGA	2 cut(s)	32, 53
AvaII	GGWCC	2 cut(s)	432, 1412
BaeGI	GKGCMC	2 cut(s)	31, 565
BaeI	ACNNNNGTAYC	2 cut(s)	1417, 1450
BamHI	GGATCC	1 cut(s)	784
BanI	GGYRCC	1 cut(s)	1433
BanII	GRGCYC	3 cut(s)	354, 541, 1111
BbsI	GAAGAC	1 cut(s)	1344
Bbv12I	GWGCWC	3 cut(s)	354, 565, 904
BbvI	GCAGC	4 cut(s)	388, 820, 1060, 1232
BccI	CCATC	4 cut(s)	124, 422, 1300, 1403
BcgI	CGANNNNNNTGC	2 cut(s)	812, 846
BciT130I	CCWGG	3 cut(s)	406, 882, 1038
BcoDI	GTCTC	1 cut(s)	1054
BfaI	CTAG	2 cut(s)	1190, 1268
BfmI	CTRYAG	1 cut(s)	1454
BfoI	RGCGCY	2 cut(s)	480, 1344
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	5 cut(s)	402, 834, 1074, 1221, 1339
BlpI	GCTNAGC	1 cut(s)	1077
BlsI	GCNGC	5 cut(s)	403, 835, 1075, 1222, 1340
Bme1390I	CCNGG	3 cut(s)	406, 882, 1038
Bme18I	GGWCC	2 cut(s)	432, 1412
BmgBI	CACGTC	1 cut(s)	1004
BmgT120I	GGNCC	5 cut(s)	432, 1034, 1255, 1380, 1412
BmiI	GGNNCC	4 cut(s)	433, 540, 786, 1435
BmrFI	CCNGG	3 cut(s)	406, 882, 1038
BmrI	ACTGGG	2 cut(s)	204, 1001
BmsI	GCATC	5 cut(s)	118, 334, 688, 698, 916
BmuI	ACTGGG	2 cut(s)	204, 1001
BoxI	GACNNNNGTC	1 cut(s)	1362
BpiI	GAAGAC	1 cut(s)	1344
BpmI	CTGGAG	2 cut(s)	864, 1235
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	1077
BpuEI	CTTGAG	1 cut(s)	662
BsaAI	YACGTR	1 cut(s)	968
BsaJI	CCNNGG	5 cut(s)	273, 405, 1036, 1258, 1333
BsaWI	WCCGGW	3 cut(s)	654, 873, 1414
BsaXI	ACNNNNNCTCC	4 cut(s)	326, 356, 575, 605
Bsc4I	CCNNNNNNNGG	5 cut(s)	119, 216, 315, 572, 1297
Bse1I	ACTGG	2 cut(s)	210, 996
Bse3DI	GCAATG	5 cut(s)	675, 1051, 1278, 1329, 1437
BseAI	TCCGGA	2 cut(s)	873, 1414
BseBI	CCWGG	3 cut(s)	406, 882, 1038
BseDI	CCNNGG	5 cut(s)	273, 405, 1036, 1258, 1333
BseGI	GGATG	4 cut(s)	109, 325, 689, 1423
BseLI	CCNNNNNNNGG	5 cut(s)	119, 216, 315, 572, 1297
BseMI	GCAATG	5 cut(s)	675, 1051, 1278, 1329, 1437
BseMII	CTCAG	3 cut(s)	96, 314, 1068
BseNI	ACTGG	2 cut(s)	210, 996
BseRI	GAGGAG	2 cut(s)	347, 350
BseSI	GKGCMC	2 cut(s)	31, 565
BseXI	GCAGC	4 cut(s)	388, 820, 1060, 1232
BseYI	CCCAGC	2 cut(s)	30, 973
Bsh1236I	CGCG	1 cut(s)	1260
BshFI	GGCC	4 cut(s)	369, 1035, 1256, 1382
BshNI	GGYRCC	1 cut(s)	1433
BsiHKAI	GWGCWC	3 cut(s)	354, 565, 904
BsiSI	CCGG	3 cut(s)	655, 874, 1415
BslFI	GGGAC	4 cut(s)	171, 191, 445, 956
BslI	CCNNNNNNNGG	5 cut(s)	119, 216, 315, 572, 1297
BsmAI	GTCTC	1 cut(s)	1054
BsmFI	GGGAC	4 cut(s)	171, 191, 445, 956
BsnI	GGCC	4 cut(s)	369, 1035, 1256, 1382
Bsp1286I	GDGCHC	6 cut(s)	31, 354, 541, 565, 904, 1111
Bsp13I	TCCGGA	2 cut(s)	873, 1414
Bsp1407I	TGTACA	1 cut(s)	886
Bsp143I	GATC	5 cut(s)	172, 259, 516, 784, 858
Bsp1720I	GCTNAGC	1 cut(s)	1077
Bsp19I	CCATGG	2 cut(s)	273, 1333
BspACI	CCGC	3 cut(s)	1258, 1260, 1338
BspANI	GGCC	4 cut(s)	369, 1035, 1256, 1382
BspCNI	CTCAG	3 cut(s)	97, 313, 1069
BspEI	TCCGGA	2 cut(s)	873, 1414
BspFNI	CGCG	1 cut(s)	1260
BspLI	GGNNCC	4 cut(s)	433, 540, 786, 1435
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	2 cut(s)	779, 792
BspT107I	GGYRCC	1 cut(s)	1433
BsrDI	GCAATG	5 cut(s)	675, 1051, 1278, 1329, 1437
BsrGI	TGTACA	1 cut(s)	886
BsrI	ACTGG	2 cut(s)	210, 996
BssECI	CCNNGG	5 cut(s)	273, 405, 1036, 1258, 1333
BssMI	GATC	5 cut(s)	172, 259, 516, 784, 858
BssT1I	CCWWGG	2 cut(s)	273, 1333
Bst2UI	CCWGG	3 cut(s)	406, 882, 1038
Bst4CI	ACNGT	4 cut(s)	322, 557, 852, 910
Bst6I	CTCTTC	1 cut(s)	1114
BstAUI	TGTACA	1 cut(s)	886
BstBAI	YACGTR	1 cut(s)	968
BstC8I	GCNNGC	5 cut(s)	36, 354, 942, 1258, 1345
BstDEI	CTNAG	5 cut(s)	105, 300, 862, 1077, 1112
BstDSI	CCRYGG	3 cut(s)	273, 1258, 1333
BstENI	CCTNNNNNAGG	2 cut(s)	117, 570
BstF5I	GGATG	4 cut(s)	109, 325, 689, 1423
BstFNI	CGCG	1 cut(s)	1260
BstH2I	RGCGCY	2 cut(s)	480, 1344
BstHHI	GCGC	2 cut(s)	479, 1343
BstKTI	GATC	5 cut(s)	175, 262, 519, 787, 861
BstMAI	GTCTC	1 cut(s)	1054
BstMBI	GATC	5 cut(s)	172, 259, 516, 784, 858
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 106, 407, 1106, 1283, 1344
BstNI	CCWGG	3 cut(s)	406, 882, 1038
BstNSI	RCATGY	2 cut(s)	38, 944
BstPAI	GACNNNNGTC	1 cut(s)	1362
BstSCI	CCNGG	3 cut(s)	404, 880, 1036
BstSFI	CTRYAG	1 cut(s)	1454
BstSLI	GKGCMC	2 cut(s)	31, 565
BstUI	CGCG	1 cut(s)	1260
BstV1I	GCAGC	4 cut(s)	388, 820, 1060, 1232
BstV2I	GAAGAC	1 cut(s)	1344
BstX2I	RGATCY	1 cut(s)	784
BstXI	CCANNNNNNTGG	1 cut(s)	1207
BstYI	RGATCY	1 cut(s)	784
BsuRI	GGCC	4 cut(s)	369, 1035, 1256, 1382
BtgI	CCRYGG	3 cut(s)	273, 1258, 1333
BtrI	CACGTC	1 cut(s)	1004
BtsCI	GGATG	4 cut(s)	109, 325, 689, 1423
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	5 cut(s)	36, 354, 942, 1258, 1345
CfoI	GCGC	2 cut(s)	479, 1343
Cfr13I	GGNCC	5 cut(s)	432, 1034, 1255, 1380, 1412
Cfr42I	CCGCGG	1 cut(s)	1261
Csp6I	GTAC	3 cut(s)	887, 965, 1434
CviQI	GTAC	3 cut(s)	887, 965, 1434
DdeI	CTNAG	5 cut(s)	105, 300, 862, 1077, 1112
DpnI	GATC	5 cut(s)	174, 261, 518, 786, 860
DpnII	GATC	5 cut(s)	172, 259, 516, 784, 858
Eam1104I	CTCTTC	1 cut(s)	1114
EarI	CTCTTC	1 cut(s)	1114
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	273, 1333
Eco147I	AGGCCT	1 cut(s)	369
Eco24I	GRGCYC	3 cut(s)	354, 541, 1111
Eco32I	GATATC	2 cut(s)	506, 871
Eco47I	GGWCC	2 cut(s)	432, 1412
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	352
EcoNI	CCTNNNNNAGG	2 cut(s)	117, 570
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	404, 880, 1036
EcoRV	GATATC	2 cut(s)	506, 871
EcoT14I	CCWWGG	2 cut(s)	273, 1333
EcoT22I	ATGCAT	2 cut(s)	73, 843
EcoT38I	GRGCYC	3 cut(s)	354, 541, 1111
ErhI	CCWWGG	2 cut(s)	273, 1333
FaqI	GGGAC	4 cut(s)	171, 191, 445, 956
FauI	CCCGC	1 cut(s)	1265
FblI	GTMKAC	3 cut(s)	305, 727, 796
Fnu4HI	GCNGC	5 cut(s)	402, 834, 1074, 1221, 1339
FokI	GGATG	4 cut(s)	96, 312, 676, 1430
FriOI	GRGCYC	3 cut(s)	354, 541, 1111
Fsp4HI	GCNGC	5 cut(s)	402, 834, 1074, 1221, 1339
FspBI	CTAG	2 cut(s)	1190, 1268
GlaI	GCGC	2 cut(s)	478, 1342
GluI	GCNGC	5 cut(s)	402, 834, 1074, 1221, 1339
GsaI	CCCAGC	2 cut(s)	34, 977
GsuI	CTGGAG	2 cut(s)	864, 1235
HaeII	RGCGCY	2 cut(s)	480, 1344
HaeIII	GGCC	4 cut(s)	369, 1035, 1256, 1382
HapII	CCGG	3 cut(s)	655, 874, 1415
HhaI	GCGC	2 cut(s)	479, 1343
Hin6I	GCGC	2 cut(s)	477, 1341
HinP1I	GCGC	2 cut(s)	477, 1341
HinfI	GANTC	4 cut(s)	92, 651, 737, 877
HpaII	CCGG	3 cut(s)	655, 874, 1415
HphI	GGTGA	2 cut(s)	32, 53
Hpy166II	GTNNAC	7 cut(s)	306, 563, 728, 768, 797, 887, 1426
Hpy188I	TCNGA	7 cut(s)	187, 451, 697, 1165, 1305, 1357, 1478
Hpy188III	TCNNGA	7 cut(s)	15, 104, 329, 660, 874, 1214, 1415
Hpy8I	GTNNAC	7 cut(s)	306, 563, 728, 768, 797, 887, 1426
HpyAV	CCTTC	4 cut(s)	182, 359, 992, 1035
HpyCH4III	ACNGT	4 cut(s)	322, 557, 852, 910
HpyCH4IV	ACGT	3 cut(s)	313, 967, 1003
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 106, 407, 1106, 1283, 1344
HpyF3I	CTNAG	5 cut(s)	105, 300, 862, 1077, 1112
HpySE526I	ACGT	3 cut(s)	313, 967, 1003
HspAI	GCGC	2 cut(s)	477, 1341
Kpn2I	TCCGGA	2 cut(s)	873, 1414
KpnI	GGTACC	1 cut(s)	1437
KspI	CCGCGG	1 cut(s)	1261
Kzo9I	GATC	5 cut(s)	172, 259, 516, 784, 858
LmnI	GCTCC	3 cut(s)	349, 544, 1070
Lsp1109I	GCAGC	4 cut(s)	388, 820, 1060, 1232
LweI	GCATC	5 cut(s)	118, 334, 688, 698, 916
MaeI	CTAG	2 cut(s)	1190, 1268
MaeII	ACGT	3 cut(s)	313, 967, 1003
MaeIII	GTNAC	2 cut(s)	41, 1044
MalI	GATC	5 cut(s)	174, 261, 518, 786, 860
MboI	GATC	5 cut(s)	172, 259, 516, 784, 858
MboII	GAAGA	4 cut(s)	182, 269, 1131, 1344
MflI	RGATCY	1 cut(s)	784
MhlI	GDGCHC	6 cut(s)	31, 354, 541, 565, 904, 1111
MluCI	AATT	4 cut(s)	52, 227, 284, 420
MlyI	GAGTC	1 cut(s)	871
MmeI	TCCRAC	1 cut(s)	296
Mph1103I	ATGCAT	2 cut(s)	73, 843
MroI	TCCGGA	2 cut(s)	873, 1414
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	3 cut(s)	39, 939, 1322
MspA1I	CMGCKG	1 cut(s)	1260
MspI	CCGG	3 cut(s)	655, 874, 1415
MspR9I	CCNGG	3 cut(s)	406, 882, 1038
MvaI	CCWGG	3 cut(s)	406, 882, 1038
MvnI	CGCG	1 cut(s)	1260
MwoI	GCNNNNNNNGC	6 cut(s)	35, 106, 407, 1106, 1283, 1344
NcoI	CCATGG	2 cut(s)	273, 1333
NdeII	GATC	5 cut(s)	172, 259, 516, 784, 858
NlaIV	GGNNCC	4 cut(s)	433, 540, 786, 1435
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	2 cut(s)	73, 843
NspI	RCATGY	2 cut(s)	38, 944
PaeI	GCATGC	2 cut(s)	38, 944
PaqCI	CACCTGC	1 cut(s)	29
PceI	AGGCCT	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	92, 651, 737
PkrI	GCNGC	5 cut(s)	403, 835, 1075, 1222, 1340
PleI	GAGTC	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	871
Ppu21I	YACGTR	1 cut(s)	968
PshAI	GACNNNNGTC	1 cut(s)	1362
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	3 cut(s)	404, 880, 1036
PspFI	CCCAGC	2 cut(s)	30, 973
PspGI	CCWGG	3 cut(s)	404, 880, 1036
PspN4I	GGNNCC	4 cut(s)	433, 540, 786, 1435
PspPI	GGNCC	5 cut(s)	432, 1034, 1255, 1380, 1412
PsuI	RGATCY	1 cut(s)	784
RsaI	GTAC	3 cut(s)	888, 966, 1435
RsaNI	GTAC	3 cut(s)	887, 965, 1434
RseI	CAYNNNNRTG	3 cut(s)	39, 939, 1322
SacI	GAGCTC	1 cut(s)	354
SacII	CCGCGG	1 cut(s)	1261
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	5 cut(s)	402, 834, 1074, 1221, 1339
Sau3AI	GATC	5 cut(s)	172, 259, 516, 784, 858
Sau96I	GGNCC	5 cut(s)	432, 1034, 1255, 1380, 1412
SchI	GAGTC	1 cut(s)	871
ScrFI	CCNGG	3 cut(s)	406, 882, 1038
SduI	GDGCHC	6 cut(s)	31, 354, 541, 565, 904, 1111
SfaNI	GCATC	5 cut(s)	118, 334, 688, 698, 916
SfcI	CTRYAG	1 cut(s)	1454
Sfr303I	CCGCGG	1 cut(s)	1261
SgrBI	CCGCGG	1 cut(s)	1261
SinI	GGWCC	2 cut(s)	432, 1412
SmiMI	CAYNNNNRTG	3 cut(s)	39, 939, 1322
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SphI	GCATGC	2 cut(s)	38, 944
Sse9I	AATT	4 cut(s)	52, 227, 284, 420
SseBI	AGGCCT	1 cut(s)	369
SsiI	CCGC	3 cut(s)	1258, 1260, 1338
SspI	AATATT	1 cut(s)	985
SspMI	CTAG	2 cut(s)	1190, 1268
SstI	GAGCTC	1 cut(s)	354
StuI	AGGCCT	1 cut(s)	369
StyD4I	CCNGG	3 cut(s)	404, 880, 1036
StyI	CCWWGG	2 cut(s)	273, 1333
TaaI	ACNGT	4 cut(s)	322, 557, 852, 910
TaiI	ACGT	3 cut(s)	316, 970, 1006
TaqI	TCGA	2 cut(s)	711, 1180
TasI	AATT	4 cut(s)	52, 227, 284, 420
TatI	WGTACW	1 cut(s)	886
TauI	GCSGC	1 cut(s)	1341
TfiI	GAWTC	3 cut(s)	92, 651, 737
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	4 cut(s)	401, 833, 1073, 1220
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	241, 729, 1434
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	1 cut(s)	327
VneI	GTGCAC	1 cut(s)	561
VpaK11BI	GGWCC	2 cut(s)	432, 1412
XagI	CCTNNNNNAGG	2 cut(s)	117, 570
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	2 cut(s)	38, 944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1340
XmiI	GTMKAC	3 cut(s)	305, 727, 796
XspI	CTAG	2 cut(s)	1190, 1268
Zsp2I	ATGCAT	2 cut(s)	73, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.