Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Reverse (-)

45908959 .. 45915378

Gene Structure 6420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG247100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2292 bp

ATGGCTAACGAGCTCGACCTCGACGCCTTGCTCCGCTACGCCGCCGCTAACGTCACCGGCTTTCCTCCCTCGCCGTCCAATTTCACCGTCTCTAAGTTCGGGCATGGACAATCGAATCCGACTTATCTGATGCAAGTAGGATCGGGAGCGTCGGTGAAACGCTACGTTTTGAGAAAGAAGCCGCCGGGGAAGCTGCTTCAGTCTGCTCATGCTGTGGAGAGAGAATTCCAGGTTCTTCAAGCATTGGGTAATCATACTGTAGTTCCGGTTCCGAAAGTTTTCTGTTTGTGTACTGATCCAAGCGTGATTGGAACCGCTTTTTACATCATGGAGTTTTTGGAAGGGCGCATTTTTGTCGACCCCAGGCTACCGGGTGTAGAGCCTGCGAGCAGGAGGGCTATTTACCAAGCGACTGCAAAAGCTTTAGCATCGCTGCATTCTGCTGACATTGATGCCATTGGACTAGGAAACTATGGGCGTCGTGAAAACTATTGTAAACGGCAGGTAGAGAGGTGGGCAAAACAATATATTGCCTCCACTGGTGAAGGCAAGCCTGAGAGAAATCCGAAGATGTTTGAGCTGATTGATTGGTTAGAGCAGCATATTCCTCTTGAAGATTCTTCAGGAGGTGCAACCGGCTTAGTGCATGGGGACTTTCGCCTCGATAATCTTGTGTTTCATCCTATTGAGGATCGAGTGGTTGGCATTCTTGACTGGGAATTGTCTACTCTTGGAAACCAAATGTGTGATGTTGCTTACTGTTCTTTGCCTTACATCACAGACTTGGGGGTTGACAAAGATCAACTTGGTAAAGGTATGGAACATACTGGGCTTCCAGAAGGGATTCCTTCTCAGGCAGAATATGTGGCAGAATACTGCTCTTCATCTGGAAAGCCATGGCCTTTTGCTCAGTGGAAGTTTTATATAGCATTTTCTTTATTCCGTGGCGCATCAATTTATGCGGGCATCTATAGTAGATGGATCATGGGTAATGCTTCAGGAGGTGAGAGTGCCCAGCATGCAGGTGACAAAGCTAATTTTCTTATAGACTATGCATGGGCATTTGTTAGACGAGAATCTGTGCTTCCTGAGCATCCTCCATCAGGGTCTTTTGTTGCTCAAAACTGCTTGAAAAGATTGGGACAAGAGAGTGAAGATCAAGGATTTTCAGAAGGGGGAGGAAAGTTTGTCCCCAGTAAAAGGATTTTAGAATTGAGAAAAAGGTTGGTCAAGTTCATGGAAGATCACATATATCCCATGGAAAAAGAATTCTACAAACTTGCTCAGTCTACCTCACGTTGGACAGTGCATCCAGAGGAGGAGAAGTTAAAGGAGCTCGCAAAGAAAGAAGGCCTATGGAACTTATTTATACCTTTTGATAGTGCTGCCAGGGCAAAAAAATTAATTTTTGATGGGACCAATCAACTTCAGTCAGATGATACCTACAATCAGTTATTGGGCGCTGGTCTTTCAAACCTTGAATACGGATATCTTTGTGAGATCATGGGTCGTTCTATTTGGGCTCCACAAGTGTTCAACTGTGGCGCACCTGATACAGGAAATATGGAGGTCTTGTTGCGTTATGGGAACAAAGAACAACTACTTGAATGGCTTATTCCTTTACTTGAGGGGAGAATCCGGTCAGGATTTGCAATGACAGAACCCCAAGTTGCATCCTCTGATGCAACTAACATCGAGTGTTCTATTAGTAGACAAGGAGATTCATATATTATCAATGGAAAAAAATGGTGGACAAGTGGGGCTATGGATCCAAGATGTAGACTTCTTATAGTCATGGGAAAAACCGACTTCAATGCTGCTATGCATAAACAACAGTCTATGATCTTAGTGGATATCCGGACTCCAGGTGTACATATCAAGAGAGCACTTACAGTTTTTGGCTTTGATGATGCACCTCATGGGCATGCAGAAGTTTTATTTGACAATGTACGCGTCCCAGCAAAGAATATTCTACTGGGAGAAGGACGTGGGTTTGAGATTGCACAGGGTAGGTTAGGCCCAGGAAGGTTACACCATTGCATGAGACTGATAGGAGCTGCTGAGCGAGGCATGGAGATAATGGCTGAAAGGGCTCTTAGTAGAAGAGTTTTTGGGAAGTTGATTGCTGAACAAGGCTCTTTTCGTTCTGATATAGCAAAGTGTCGAATAGAGCTAGAGAAAACCAGATTGTTGGTTCTGGAGGCAGCCGACCAGCTTGATAGACTTGGAAACAAAAAGGCCCGCGGAACTCTAGCAATGGCAAAGGTATATGATTACTGTTTGCTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

763

Amino Acids

85.11

Weight (kDa)

7.56

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	30 - 255	2.5e-48	Phosphotransferase enzyme family
Acyl-CoA_dh_M	PF02770	549 - 650	6e-18	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	662 - 757	4.6e-18	Acyl-CoA dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2290
AarI	CACCTGC	1 cut(s)	1013
Acc36I	ACCTGC	2 cut(s)	493, 1013
AccI	GTMKAC	5 cut(s)	357, 725, 1289, 1711, 1780
AccII	CGCG	2 cut(s)	1953, 2244
AccIII	TCCGGA	1 cut(s)	1857
AciI	CCGC	8 cut(s)	34, 42, 45, 182, 315, 962, 2242, 2244
AclWI	GGATC	6 cut(s)	148, 290, 699, 989, 1763, 1776
AcsI	RAATTY	2 cut(s)	224, 1268
AcuI	CTGAAG	4 cut(s)	182, 606, 981, 1412
AcyI	GRCGYC	2 cut(s)	24, 478
AfaI	GTAC	3 cut(s)	292, 1872, 1950
AfiI	CCNNNNNNNGG	4 cut(s)	1103, 1200, 1299, 1556
AflIII	ACRYGT	1 cut(s)	1951
AgsI	TTSAA	8 cut(s)	239, 614, 1132, 1473, 1481, 1537, 1607, 1813
AjiI	CACGTC	1 cut(s)	1988
AjnI	CCWGG	5 cut(s)	228, 362, 1388, 1864, 2020
AluBI	AGCT	9 cut(s)	13, 193, 422, 580, 1034, 1336, 2057, 2173, 2215
AluI	AGCT	9 cut(s)	13, 193, 422, 580, 1034, 1336, 2057, 2173, 2215
Alw21I	GWGCWC	3 cut(s)	15, 1338, 1888
Alw26I	GTCTC	2 cut(s)	94, 2038
AlwI	GGATC	6 cut(s)	148, 290, 699, 989, 1763, 1776
Aor13HI	TCCGGA	1 cut(s)	1857
AoxI	GGCC	4 cut(s)	899, 1351, 2017, 2238
ApeKI	GCWGC	7 cut(s)	193, 433, 598, 1385, 1817, 2057, 2204
ApoI	RAATTY	2 cut(s)	224, 1268
AseI	ATTAAT	1 cut(s)	1403
Asp700I	GAANNNNTTC	2 cut(s)	278, 843
AspLEI	GCGC	4 cut(s)	348, 950, 1463, 1547
AspS9I	GGNCC	3 cut(s)	1416, 2018, 2239
AsuC2I	CCSGG	2 cut(s)	186, 372
AsuHPI	GGTGA	6 cut(s)	46, 76, 166, 554, 1016, 1037
AvaII	GGWCC	1 cut(s)	1416
BaeGI	GKGCMC	1 cut(s)	1015
BamHI	GGATCC	1 cut(s)	1768
BanII	GRGCYC	4 cut(s)	15, 1338, 1525, 2095
Bbv12I	GWGCWC	3 cut(s)	15, 1338, 1888
BbvI	GCAGC	7 cut(s)	180, 420, 610, 1372, 1804, 2044, 2216
BccI	CCATC	3 cut(s)	972, 1108, 1406
BceAI	ACGGC	2 cut(s)	58, 515
BcgI	CGANNNNNNTGC	4 cut(s)	337, 371, 1796, 1830
BciT130I	CCWGG	5 cut(s)	230, 364, 1390, 1866, 2022
BcnI	CCSGG	2 cut(s)	186, 372
BcoDI	GTCTC	2 cut(s)	94, 2038
BfaI	CTAG	3 cut(s)	464, 2174, 2252
BfmI	CTRYAG	2 cut(s)	258, 970
BfoI	RGCGCY	1 cut(s)	1464
BfuAI	ACCTGC	2 cut(s)	493, 1013
BlpI	GCTNAGC	1 cut(s)	2061
Bme1390I	CCNGG	7 cut(s)	186, 230, 364, 372, 1390, 1866, 2022
Bme18I	GGWCC	1 cut(s)	1416
BmgBI	CACGTC	1 cut(s)	1988
BmgT120I	GGNCC	3 cut(s)	1416, 2018, 2239
BmiI	GGNNCC	5 cut(s)	270, 313, 1417, 1524, 1770
BmrFI	CCNGG	7 cut(s)	186, 230, 364, 372, 1390, 1866, 2022
BmrI	ACTGGG	4 cut(s)	724, 837, 1188, 1985
BmuI	ACTGGG	4 cut(s)	724, 837, 1188, 1985
BpmI	CTGGAG	2 cut(s)	1848, 2219
Bpu10I	CCTNAGC	1 cut(s)	1089
Bpu1102I	GCTNAGC	1 cut(s)	2061
BpuEI	CTTGAG	1 cut(s)	1646
BpuMI	CCSGG	2 cut(s)	186, 372
BsaHI	GRCGYC	2 cut(s)	24, 478
BsaJI	CCNNGG	8 cut(s)	185, 362, 896, 943, 1257, 1389, 2020, 2242
BsaWI	WCCGGW	3 cut(s)	265, 1638, 1857
BsaXI	ACNNNNNCTCC	6 cut(s)	138, 168, 1310, 1340, 1559, 1589
Bsc4I	CCNNNNNNNGG	4 cut(s)	1103, 1200, 1299, 1556
Bse118I	RCCGGY	2 cut(s)	56, 635
Bse1I	ACTGG	5 cut(s)	544, 719, 832, 1194, 1980
Bse3DI	GCAATG	3 cut(s)	1659, 2035, 2262
BseAI	TCCGGA	1 cut(s)	1857
BseBI	CCWGG	5 cut(s)	230, 364, 1390, 1866, 2022
BseDI	CCNNGG	8 cut(s)	185, 362, 896, 943, 1257, 1389, 2020, 2242
BseGI	GGATG	4 cut(s)	679, 1093, 1309, 1673
BseLI	CCNNNNNNNGG	4 cut(s)	1103, 1200, 1299, 1556
BseMI	GCAATG	3 cut(s)	1659, 2035, 2262
BseMII	CTCAG	6 cut(s)	546, 866, 923, 1080, 1298, 2052
BseNI	ACTGG	5 cut(s)	544, 719, 832, 1194, 1980
BseRI	GAGGAG	2 cut(s)	1331, 1334
BseSI	GKGCMC	1 cut(s)	1015
BseXI	GCAGC	7 cut(s)	180, 420, 610, 1372, 1804, 2044, 2216
BseYI	CCCAGC	2 cut(s)	1014, 1957
Bsh1236I	CGCG	2 cut(s)	1953, 2244
BshFI	GGCC	4 cut(s)	901, 1353, 2019, 2240
BsiHKAI	GWGCWC	3 cut(s)	15, 1338, 1888
BsiSI	CCGG	7 cut(s)	57, 185, 266, 371, 636, 1639, 1858
BslFI	GGGAC	5 cut(s)	665, 1155, 1175, 1429, 1940
BslI	CCNNNNNNNGG	4 cut(s)	1103, 1200, 1299, 1556
BsmAI	GTCTC	2 cut(s)	94, 2038
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	5 cut(s)	665, 1155, 1175, 1429, 1940
BsmI	GAATGC	2 cut(s)	436, 705
BsnI	GGCC	4 cut(s)	901, 1353, 2019, 2240
Bsp1286I	GDGCHC	6 cut(s)	15, 1015, 1338, 1525, 1888, 2095
Bsp13I	TCCGGA	1 cut(s)	1857
Bsp1407I	TGTACA	1 cut(s)	1870
Bsp1720I	GCTNAGC	1 cut(s)	2061
Bsp19I	CCATGG	2 cut(s)	896, 1257
BspACI	CCGC	8 cut(s)	34, 42, 45, 182, 315, 962, 2242, 2244
BspANI	GGCC	4 cut(s)	901, 1353, 2019, 2240
BspCNI	CTCAG	6 cut(s)	547, 865, 922, 1081, 1297, 2053
BspEI	TCCGGA	1 cut(s)	1857
BspFNI	CGCG	2 cut(s)	1953, 2244
BspLI	GGNNCC	5 cut(s)	270, 313, 1417, 1524, 1770
BspMI	ACCTGC	2 cut(s)	493, 1013
BspPI	GGATC	6 cut(s)	148, 290, 699, 989, 1763, 1776
BspQI	GCTCTTC	1 cut(s)	886
BsrDI	GCAATG	3 cut(s)	1659, 2035, 2262
BsrFI	RCCGGY	2 cut(s)	56, 635
BsrGI	TGTACA	1 cut(s)	1870
BsrI	ACTGG	5 cut(s)	544, 719, 832, 1194, 1980
BssAI	RCCGGY	2 cut(s)	56, 635
BssECI	CCNNGG	8 cut(s)	185, 362, 896, 943, 1257, 1389, 2020, 2242
BssNI	GRCGYC	2 cut(s)	24, 478
BssT1I	CCWWGG	2 cut(s)	896, 1257
Bst2UI	CCWGG	5 cut(s)	230, 364, 1390, 1866, 2022
Bst4CI	ACNGT	8 cut(s)	88, 259, 761, 1306, 1541, 1836, 1894, 2279
Bst6I	CTCTTC	2 cut(s)	886, 2098
BstACI	GRCGYC	2 cut(s)	24, 478
BstAUI	TGTACA	1 cut(s)	1870
BstC8I	GCNNGC	8 cut(s)	384, 388, 551, 964, 1020, 1338, 1926, 2242
BstDSI	CCRYGG	4 cut(s)	896, 943, 1257, 2242
BstENI	CCTNNNNNAGG	2 cut(s)	1101, 1554
BstF5I	GGATG	4 cut(s)	679, 1093, 1309, 1673
BstFNI	CGCG	2 cut(s)	1953, 2244
BstH2I	RGCGCY	1 cut(s)	1464
BstHHI	GCGC	4 cut(s)	348, 950, 1463, 1547
BstMAI	GTCTC	2 cut(s)	94, 2038
BstMWI	GCNNNNNNNGC	5 cut(s)	190, 1019, 1090, 1391, 2090
BstNI	CCWGG	5 cut(s)	230, 364, 1390, 1866, 2022
BstNSI	RCATGY	2 cut(s)	1022, 1928
BstSCI	CCNGG	7 cut(s)	184, 228, 362, 370, 1388, 1864, 2020
BstSFI	CTRYAG	2 cut(s)	258, 970
BstSLI	GKGCMC	1 cut(s)	1015
BstUI	CGCG	2 cut(s)	1953, 2244
BstV1I	GCAGC	7 cut(s)	180, 420, 610, 1372, 1804, 2044, 2216
BstX2I	RGATCY	1 cut(s)	1768
BstXI	CCANNNNNNTGG	1 cut(s)	2191
BstYI	RGATCY	1 cut(s)	1768
BsuRI	GGCC	4 cut(s)	901, 1353, 2019, 2240
BtgI	CCRYGG	4 cut(s)	896, 943, 1257, 2242
BtgZI	GCGATG	1 cut(s)	414
BtrI	CACGTC	1 cut(s)	1988
BtsCI	GGATG	4 cut(s)	679, 1093, 1309, 1673
BtsIMutI	CAGTG	3 cut(s)	537, 917, 1311
BveI	ACCTGC	2 cut(s)	493, 1013
Cac8I	GCNNGC	8 cut(s)	384, 388, 551, 964, 1020, 1338, 1926, 2242
CfoI	GCGC	4 cut(s)	348, 950, 1463, 1547
Cfr10I	RCCGGY	2 cut(s)	56, 635
Cfr13I	GGNCC	3 cut(s)	1416, 2018, 2239
Cfr42I	CCGCGG	1 cut(s)	2245
CseI	GACGC	4 cut(s)	32, 138, 467, 1942
Csp6I	GTAC	3 cut(s)	291, 1871, 1949
CviQI	GTAC	3 cut(s)	291, 1871, 1949
Eam1104I	CTCTTC	2 cut(s)	886, 2098
EarI	CTCTTC	2 cut(s)	886, 2098
Ecl136II	GAGCTC	2 cut(s)	13, 1336
Eco130I	CCWWGG	2 cut(s)	896, 1257
Eco147I	AGGCCT	1 cut(s)	1353
Eco24I	GRGCYC	4 cut(s)	15, 1338, 1525, 2095
Eco32I	GATATC	2 cut(s)	1490, 1855
Eco47I	GGWCC	1 cut(s)	1416
Eco53kI	GAGCTC	2 cut(s)	13, 1336
Eco57I	CTGAAG	4 cut(s)	182, 606, 981, 1412
EcoICRI	GAGCTC	2 cut(s)	13, 1336
EcoNI	CCTNNNNNAGG	2 cut(s)	1101, 1554
EcoRI	GAATTC	2 cut(s)	224, 1268
EcoRII	CCWGG	5 cut(s)	228, 362, 1388, 1864, 2020
EcoRV	GATATC	2 cut(s)	1490, 1855
EcoT14I	CCWWGG	2 cut(s)	896, 1257
EcoT22I	ATGCAT	2 cut(s)	1057, 1827
EcoT38I	GRGCYC	4 cut(s)	15, 1338, 1525, 2095
ErhI	CCWWGG	2 cut(s)	896, 1257
Esp3I	CGTCTC	1 cut(s)	94
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FaqI	GGGAC	5 cut(s)	665, 1155, 1175, 1429, 1940
FauI	CCCGC	2 cut(s)	955, 2249
FblI	GTMKAC	5 cut(s)	357, 725, 1289, 1711, 1780
FokI	GGATG	4 cut(s)	666, 1080, 1296, 1660
FriOI	GRGCYC	4 cut(s)	15, 1338, 1525, 2095
FspBI	CTAG	3 cut(s)	464, 2174, 2252
GlaI	GCGC	4 cut(s)	347, 949, 1462, 1546
GsaI	CCCAGC	2 cut(s)	1018, 1961
GsuI	CTGGAG	2 cut(s)	1848, 2219
HaeII	RGCGCY	1 cut(s)	1464
HaeIII	GGCC	4 cut(s)	901, 1353, 2019, 2240
HapII	CCGG	7 cut(s)	57, 185, 266, 371, 636, 1639, 1858
HgaI	GACGC	4 cut(s)	32, 138, 467, 1942
HhaI	GCGC	4 cut(s)	348, 950, 1463, 1547
Hin1I	GRCGYC	2 cut(s)	24, 478
Hin6I	GCGC	4 cut(s)	346, 948, 1461, 1545
HinP1I	GCGC	4 cut(s)	346, 948, 1461, 1545
HincII	GTYRAC	2 cut(s)	358, 793
HindII	GTYRAC	2 cut(s)	358, 793
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	7 cut(s)	115, 617, 844, 1076, 1635, 1721, 1861
HpaII	CCGG	7 cut(s)	57, 185, 266, 371, 636, 1639, 1858
HphI	GGTGA	6 cut(s)	46, 76, 166, 554, 1016, 1037
Hpy188I	TCNGA	8 cut(s)	120, 129, 273, 567, 1171, 1435, 1681, 2149
Hpy99I	CGWCG	3 cut(s)	26, 154, 483
HpyAV	CCTTC	8 cut(s)	335, 539, 833, 858, 1166, 1343, 1976, 2019
HpyCH4III	ACNGT	8 cut(s)	88, 259, 761, 1306, 1541, 1836, 1894, 2279
HpyCH4IV	ACGT	4 cut(s)	51, 165, 1297, 1987
HpyF10VI	GCNNNNNNNGC	5 cut(s)	190, 1019, 1090, 1391, 2090
HpySE526I	ACGT	4 cut(s)	51, 165, 1297, 1987
Hsp92I	GRCGYC	2 cut(s)	24, 478
HspAI	GCGC	4 cut(s)	346, 948, 1461, 1545
Kpn2I	TCCGGA	1 cut(s)	1857
KspI	CCGCGG	1 cut(s)	2245
LguI	GCTCTTC	1 cut(s)	886
LmnI	GCTCC	5 cut(s)	36, 146, 1333, 1528, 2054
Lsp1109I	GCAGC	7 cut(s)	180, 420, 610, 1372, 1804, 2044, 2216
MaeI	CTAG	3 cut(s)	464, 2174, 2252
MaeII	ACGT	4 cut(s)	51, 165, 1297, 1987
MaeIII	GTNAC	3 cut(s)	52, 1025, 2028
MboII	GAAGA	8 cut(s)	227, 580, 612, 626, 873, 1166, 1253, 2115
MflI	RGATCY	1 cut(s)	1768
MhlI	GDGCHC	6 cut(s)	15, 1015, 1338, 1525, 1888, 2095
MluCI	AATT	9 cut(s)	79, 224, 719, 954, 1036, 1211, 1268, 1400, 1404
MluI	ACGCGT	1 cut(s)	1951
MlyI	GAGTC	1 cut(s)	1855
MmeI	TCCRAC	2 cut(s)	143, 1280
Mph1103I	ATGCAT	2 cut(s)	1057, 1827
MroI	TCCGGA	1 cut(s)	1857
MroXI	GAANNNNTTC	2 cut(s)	278, 843
MseI	TTAA	2 cut(s)	1328, 1403
MslI	CAYNNNNRTG	2 cut(s)	1023, 1923
MspA1I	CMGCKG	1 cut(s)	2244
MspI	CCGG	7 cut(s)	57, 185, 266, 371, 636, 1639, 1858
MspR9I	CCNGG	7 cut(s)	186, 230, 364, 372, 1390, 1866, 2022
Mva1269I	GAATGC	2 cut(s)	436, 705
MvaI	CCWGG	5 cut(s)	230, 364, 1390, 1866, 2022
MvnI	CGCG	2 cut(s)	1953, 2244
MwoI	GCNNNNNNNGC	5 cut(s)	190, 1019, 1090, 1391, 2090
NciI	CCSGG	2 cut(s)	186, 372
NcoI	CCATGG	2 cut(s)	896, 1257
NlaIV	GGNNCC	5 cut(s)	270, 313, 1417, 1524, 1770
NmuCI	GTSAC	2 cut(s)	52, 1025
NsiI	ATGCAT	2 cut(s)	1057, 1827
NspI	RCATGY	2 cut(s)	1022, 1928
PaeI	GCATGC	2 cut(s)	1022, 1928
PaqCI	CACCTGC	1 cut(s)	1013
PceI	AGGCCT	1 cut(s)	1353
PciSI	GCTCTTC	1 cut(s)	886
PctI	GAATGC	2 cut(s)	436, 705
PdmI	GAANNNNTTC	2 cut(s)	278, 843
PfeI	GAWTC	6 cut(s)	115, 617, 844, 1076, 1635, 1721
PleI	GAGTC	1 cut(s)	1855
PpsI	GAGTC	1 cut(s)	1855
PshBI	ATTAAT	1 cut(s)	1403
PsiI	TTATAA	1 cut(s)	2290
Psp124BI	GAGCTC	2 cut(s)	15, 1338
Psp6I	CCWGG	5 cut(s)	228, 362, 1388, 1864, 2020
PspFI	CCCAGC	2 cut(s)	1014, 1957
PspGI	CCWGG	5 cut(s)	228, 362, 1388, 1864, 2020
PspN4I	GGNNCC	5 cut(s)	270, 313, 1417, 1524, 1770
PspPI	GGNCC	3 cut(s)	1416, 2018, 2239
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
PsuI	RGATCY	1 cut(s)	1768
RsaI	GTAC	3 cut(s)	292, 1872, 1950
RsaNI	GTAC	3 cut(s)	291, 1871, 1949
RseI	CAYNNNNRTG	2 cut(s)	1023, 1923
SacI	GAGCTC	2 cut(s)	15, 1338
SacII	CCGCGG	1 cut(s)	2245
SalI	GTCGAC	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	886
SaqAI	TTAA	2 cut(s)	1328, 1403
Sau96I	GGNCC	3 cut(s)	1416, 2018, 2239
SchI	GAGTC	1 cut(s)	1855
ScrFI	CCNGG	7 cut(s)	186, 230, 364, 372, 1390, 1866, 2022
SduI	GDGCHC	6 cut(s)	15, 1015, 1338, 1525, 1888, 2095
SfcI	CTRYAG	2 cut(s)	258, 970
Sfr303I	CCGCGG	1 cut(s)	2245
SgrBI	CCGCGG	1 cut(s)	2245
SinI	GGWCC	1 cut(s)	1416
SmiMI	CAYNNNNRTG	2 cut(s)	1023, 1923
SmlI	CTYRAG	1 cut(s)	1625
SmoI	CTYRAG	1 cut(s)	1625
SphI	GCATGC	2 cut(s)	1022, 1928
Sse9I	AATT	9 cut(s)	79, 224, 719, 954, 1036, 1211, 1268, 1400, 1404
SseBI	AGGCCT	1 cut(s)	1353
SsiI	CCGC	8 cut(s)	34, 42, 45, 182, 315, 962, 2242, 2244
SspI	AATATT	1 cut(s)	1969
SspMI	CTAG	3 cut(s)	464, 2174, 2252
SstI	GAGCTC	2 cut(s)	15, 1338
StuI	AGGCCT	1 cut(s)	1353
StyD4I	CCNGG	7 cut(s)	184, 228, 362, 370, 1388, 1864, 2020
StyI	CCWWGG	2 cut(s)	896, 1257
TaaI	ACNGT	8 cut(s)	88, 259, 761, 1306, 1541, 1836, 1894, 2279
TaiI	ACGT	4 cut(s)	54, 168, 1300, 1990
TaqI	TCGA	8 cut(s)	15, 21, 113, 357, 663, 694, 1695, 2164
TasI	AATT	9 cut(s)	79, 224, 719, 954, 1036, 1211, 1268, 1400, 1404
TatI	WGTACW	2 cut(s)	290, 1870
TauI	GCSGC	3 cut(s)	44, 47, 184
TfiI	GAWTC	6 cut(s)	115, 617, 844, 1076, 1635, 1721
Tru1I	TTAA	2 cut(s)	1328, 1403
Tru9I	TTAA	2 cut(s)	1328, 1403
TscAI	CASTG	3 cut(s)	544, 917, 1311
TseFI	GTSAC	2 cut(s)	52, 1025
TseI	GCWGC	7 cut(s)	193, 433, 598, 1385, 1817, 2057, 2204
Tsp45I	GTSAC	2 cut(s)	52, 1025
TspDTI	ATGAA	4 cut(s)	668, 873, 1225, 1713
TspGWI	ACGGA	2 cut(s)	932, 1500
TspRI	CASTG	3 cut(s)	544, 917, 1311
VpaK11BI	GGWCC	1 cut(s)	1416
VspI	ATTAAT	1 cut(s)	1403
XagI	CCTNNNNNAGG	2 cut(s)	1101, 1554
XapI	RAATTY	2 cut(s)	224, 1268
XceI	RCATGY	2 cut(s)	1022, 1928
XmiI	GTMKAC	5 cut(s)	357, 725, 1289, 1711, 1780
XmnI	GAANNNNTTC	2 cut(s)	278, 843
XspI	CTAG	3 cut(s)	464, 2174, 2252
Zsp2I	ATGCAT	2 cut(s)	1057, 1827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.