Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Forward (+)

18197745 .. 18203329

Gene Structure 5585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2454 bp

ATGGCTAACGAGCTCGACCTCGACGCCTTGCTCCGCTACGCCGCCGCTAACGTCACCGGCTTTCCTCCCTCGCCGTCCAATTTCACCGTCTCTAAGTTCGGGCATGGACAATCGAATCCGACTTATCTGCTGCAAGTAGGATCGGGAGCGTCGATGAAACGCTACGTTTTGAGAAAGAAGCCGCCGGGGAAGTTGCTTCCCTCTGCTCATGCTGTGGAGAGAGAATTCCAGGTTCTTCAAGCATTGGGTAATCATACTGTAGTTCCGGTTCCGAAAGTTTTCTGTTTGTGTACTGATCCAAGCGTGATTGGAACCGCTTTTTACATCATGGAGTTTTTGGAAGGGCGCATTTTTGTCGACCCCAGGCTACCGGGTGTAGAGCCTGCAAGCAGGAGGGCTATTTACCAAGCGACTACAAAAGCTTTAGCATCGCTGCATTCTGCTGACGTTGATGCCATTGGTCTAGGAAACTATGGGCGTCGCGAAAACTATTGTAAACGGCAGGTAGAGAGGTGGGCAAAACAATATATTGCCTCCACTGGTGAAGGCAAGCCTGAGAGAAATCCGAAGATGTTTGAGCTGATTGATTGGTTACAGCAGCATATTCCTCTTGAAGATTCTTCAGGAGGTGTAACCGGCTTAGTGCATGGGGACTTTCGCCTTGATAATCTTGTGTTTCATCCTATTGAGGATCGAGTGATTGGCATTCTTGACTGGGAATTGTCTACTCTTGGAAACCAAATGTGTGATGTTGCTTACTGTTCTTTGCCTTACATCACAGACTTGGGGGATCAACTTGGTAAAGGTATGGAACATACAGGGCTTCCAGAAGGGATTCCTTCTCAGGCAGAATCTGTGGCAGAATACTGCTCTTCATCCGGAAAGCCATGGCCTTTTGCTCAGTGGAAGTTTTATATAGCATTTTCTTTATTCCGTGCCGCATCAATTTATGCGGGCATCTATAGTAGATGGACCATGGGTAATGCTTCAGGAGGTGAGAGTGCCCAGCATGCAGGTGACAAAGCTAATTTTCTTATAGACTATGCATGGGCATTTGTTAGACGAGAATCTGTGCTTCCTGAGCATCCTCCATCAGGGTCTTTTCTTGAGAAAAACTACTTGAAAAGATTGGGACAAGAAACTGAAGATCAAGGATTTTCAGAAGGGAGAGGAAAGTTTGTCCCAAGTAAAAGGATTTTAGAATTGAGAAAAAGGTTGGACAAGTTCATGGAAGATCACATATATCCCATGGAAAAAGAATTCTACAAACTTGCTCAGTCTACCTCACGTTGGACAGTGCATCCAGAGGAGGAGAAGTTAAAGGAGCTCGCAAAGAAAGAAAGCCTATGGAACTTATTTATACCTTTTGATAGTGCTGCCAGGGCAAAAAAAATAATTTTTGATGGGACCAATCAACTTCAGTCAGATGATAGCTACAATCAGTTATTGGGCGCTGGTCTTTCAAACCTTGAATACGGATATCTTTGTGAGATCATGGGTCGTTCTATTTGGGCTCCACAAGTGTTCAACTGTGGCGCACCTGATACAGGAAATATGGAGGTCTTGTTGCGTTATGGGAACAAAGAACAACTACTTGAATGGCTTATTCCTTTACTTGAGGGGAGAATCCGGTCAGGATTTGCAATGACAGAACCCCAAGTTGCATCCTCTGATGCGACCAACATCGAGTGTTCTATTAGTAGACAAGGAGATTCATATATTATCAATGGAAAAAAATGGTGGACAAGTGGGGCTATGGATCCAAGATGTAGACTTCTTATAGTCATGGGAAAAACCGACTTCAATGCTGCTTTGCATAAACAACAGTCTATGATCTTAGTGGATATCCGGACTCCAGGTGTACATATAAAGAGAGCACTTACAGTTTTTGGCTTTGATGATGCACCTCATGGGCATGCAGAAGTTTTATTTGACAATGTACGCGTCCCAGCAAAGAATATTCTACTGGGAGAAGGACGTGGGTTTGAGATTGCACAGGGTAGGTTAGGCCCAGGAAGGTTACACCATTGCATGAGACTGATAGGAGCTGCTGAGCGAGGCATGGAGATAATGGCTGAAAGGGCTCTTAGTAGAAGAGTTTTTGGGAAGTTGATTGCTGAACAAGGCTCTTTTCGTTCTGATATAGCAAAGTGTCGAATAGAGCTAGAGAAAACCAGATTGTTGGTTCTGGAGGCAGCTGACCAGCTTGATAGACTTGGAAACAAAAAAGCCCGTGGCACTCTAGCAATGGCAAAGGTAGCAACCCCAAACATGGCTCTGATGGTGCTGGACATGGCAATGCAAGTCCATGGCGGCGCTGGCTTGTCTTCTGACACTTGTCTGGCTCATCTTTGGGCCACAGCAAGAACATTGAGAATAGCAGATGGTCCGGATGAAGTTCACTTGGGTACCATTGCCAAGTTAGAACTACAGAGAGCTAAAGCTAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

818

Amino Acids

90.87

Weight (kDa)

8.09

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	30 - 272	1.7e-47	Phosphotransferase enzyme family
Acyl-CoA_dh_M	PF02770	546 - 647	8.4e-18	Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1	PF00441	659 - 807	3.7e-35	Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_2	PF08028	675 - 785	3.2e-06	Acyl-CoA dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1004
Acc36I	ACCTGC	2 cut(s)	493, 1004
Acc65I	GGTACC	1 cut(s)	2408
AccB1I	GGYRCC	1 cut(s)	2408
AccI	GTMKAC	5 cut(s)	357, 725, 1280, 1702, 1771
AccII	CGCG	2 cut(s)	483, 1944
AccIII	TCCGGA	3 cut(s)	878, 1848, 2389
AciI	CCGC	8 cut(s)	34, 42, 45, 182, 315, 939, 953, 2313
AclWI	GGATC	6 cut(s)	148, 290, 699, 798, 1754, 1767
AcsI	RAATTY	2 cut(s)	224, 1259
AcuI	CTGAAG	4 cut(s)	606, 972, 1164, 1403
AcyI	GRCGYC	2 cut(s)	24, 478
AfaI	GTAC	4 cut(s)	292, 1863, 1941, 2410
AfiI	CCNNNNNNNGG	4 cut(s)	1094, 1290, 1547, 2272
AflIII	ACRYGT	1 cut(s)	1942
AgsI	TTSAA	8 cut(s)	239, 614, 1123, 1464, 1472, 1528, 1598, 1804
AjiI	CACGTC	1 cut(s)	1979
AjnI	CCWGG	5 cut(s)	228, 362, 1379, 1855, 2011
Alw21I	GWGCWC	3 cut(s)	15, 1329, 1879
Alw26I	GTCTC	2 cut(s)	94, 2029
AlwI	GGATC	6 cut(s)	148, 290, 699, 798, 1754, 1767
AlwNI	CAGNNNCTG	1 cut(s)	854
Aor13HI	TCCGGA	3 cut(s)	878, 1848, 2389
AoxI	GGCC	3 cut(s)	890, 2008, 2355
ApeKI	GCWGC	7 cut(s)	130, 433, 598, 1376, 1808, 2048, 2195
ApoI	RAATTY	2 cut(s)	224, 1259
Asp700I	GAANNNNTTC	2 cut(s)	278, 834
Asp718I	GGTACC	1 cut(s)	2408
AspLEI	GCGC	4 cut(s)	348, 1454, 1538, 2318
AspS9I	GGNCC	5 cut(s)	972, 1407, 2009, 2355, 2387
AsuC2I	CCSGG	2 cut(s)	186, 372
AsuHPI	GGTGA	5 cut(s)	46, 76, 554, 1007, 1028
AvaII	GGWCC	3 cut(s)	972, 1407, 2387
BaeGI	GKGCMC	1 cut(s)	1006
BaeI	ACNNNNGTAYC	2 cut(s)	2392, 2425
BamHI	GGATCC	1 cut(s)	1759
BanI	GGYRCC	1 cut(s)	2408
BanII	GRGCYC	4 cut(s)	15, 1329, 1516, 2086
BbsI	GAAGAC	1 cut(s)	2319
Bbv12I	GWGCWC	3 cut(s)	15, 1329, 1879
BbvI	GCAGC	7 cut(s)	117, 420, 610, 1363, 1795, 2035, 2207
BccI	CCATC	5 cut(s)	963, 1099, 1397, 2275, 2378
BceAI	ACGGC	2 cut(s)	58, 515
BcgI	CGANNNNNNTGC	6 cut(s)	109, 143, 337, 371, 1787, 1821
BciT130I	CCWGG	5 cut(s)	230, 364, 1381, 1857, 2013
BcnI	CCSGG	2 cut(s)	186, 372
BcoDI	GTCTC	2 cut(s)	94, 2029
BfaI	CTAG	3 cut(s)	464, 2165, 2243
BfmI	CTRYAG	3 cut(s)	258, 961, 2429
BfoI	RGCGCY	2 cut(s)	1455, 2319
BfuAI	ACCTGC	2 cut(s)	493, 1004
BlpI	GCTNAGC	1 cut(s)	2052
Bme1390I	CCNGG	7 cut(s)	186, 230, 364, 372, 1381, 1857, 2013
Bme18I	GGWCC	3 cut(s)	972, 1407, 2387
BmgBI	CACGTC	1 cut(s)	1979
BmgT120I	GGNCC	5 cut(s)	972, 1407, 2009, 2355, 2387
BmiI	GGNNCC	6 cut(s)	270, 313, 1408, 1515, 1761, 2410
BmrFI	CCNGG	7 cut(s)	186, 230, 364, 372, 1381, 1857, 2013
BmrI	ACTGGG	2 cut(s)	724, 1976
BmsI	GCATC	9 cut(s)	437, 442, 950, 966, 1093, 1309, 1663, 1673, 1891
BmuI	ACTGGG	2 cut(s)	724, 1976
BoxI	GACNNNNGTC	1 cut(s)	2337
BpiI	GAAGAC	1 cut(s)	2319
BpmI	CTGGAG	2 cut(s)	1839, 2210
Bpu10I	CCTNAGC	1 cut(s)	1080
Bpu1102I	GCTNAGC	1 cut(s)	2052
BpuEI	CTTGAG	2 cut(s)	1127, 1637
BpuMI	CCSGG	2 cut(s)	186, 372
BsaHI	GRCGYC	2 cut(s)	24, 478
BsaJI	CCNNGG	9 cut(s)	185, 362, 887, 975, 1248, 1380, 2011, 2233, 2308
BsaWI	WCCGGW	5 cut(s)	265, 878, 1629, 1848, 2389
BsaXI	ACNNNNNCTCC	4 cut(s)	1301, 1331, 1550, 1580
Bsc4I	CCNNNNNNNGG	4 cut(s)	1094, 1290, 1547, 2272
Bse118I	RCCGGY	2 cut(s)	56, 635
Bse1I	ACTGG	3 cut(s)	544, 719, 1971
Bse3DI	GCAATG	5 cut(s)	1650, 2026, 2253, 2304, 2412
BseAI	TCCGGA	3 cut(s)	878, 1848, 2389
BseBI	CCWGG	5 cut(s)	230, 364, 1381, 1857, 2013
BseDI	CCNNGG	9 cut(s)	185, 362, 887, 975, 1248, 1380, 2011, 2233, 2308
BseGI	GGATG	6 cut(s)	679, 875, 1084, 1300, 1664, 2398
BseLI	CCNNNNNNNGG	4 cut(s)	1094, 1290, 1547, 2272
BseMI	GCAATG	5 cut(s)	1650, 2026, 2253, 2304, 2412
BseMII	CTCAG	6 cut(s)	546, 857, 914, 1071, 1289, 2043
BseNI	ACTGG	3 cut(s)	544, 719, 1971
BseRI	GAGGAG	2 cut(s)	1322, 1325
BseSI	GKGCMC	1 cut(s)	1006
BseXI	GCAGC	7 cut(s)	117, 420, 610, 1363, 1795, 2035, 2207
BseYI	CCCAGC	2 cut(s)	1005, 1948
Bsh1236I	CGCG	2 cut(s)	483, 1944
BshFI	GGCC	3 cut(s)	892, 2010, 2357
BshNI	GGYRCC	1 cut(s)	2408
BsiHKAI	GWGCWC	3 cut(s)	15, 1329, 1879
BsiSI	CCGG	9 cut(s)	57, 185, 266, 371, 636, 879, 1630, 1849, 2390
BslFI	GGGAC	5 cut(s)	665, 1146, 1166, 1420, 1931
BslI	CCNNNNNNNGG	4 cut(s)	1094, 1290, 1547, 2272
BsmAI	GTCTC	2 cut(s)	94, 2029
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	5 cut(s)	665, 1146, 1166, 1420, 1931
BsmI	GAATGC	2 cut(s)	436, 705
BsnI	GGCC	3 cut(s)	892, 2010, 2357
Bsp1286I	GDGCHC	6 cut(s)	15, 1006, 1329, 1516, 1879, 2086
Bsp13I	TCCGGA	3 cut(s)	878, 1848, 2389
Bsp1407I	TGTACA	1 cut(s)	1861
Bsp143I	GATC	9 cut(s)	140, 295, 691, 790, 1147, 1234, 1491, 1759, 1833
Bsp1720I	GCTNAGC	1 cut(s)	2052
Bsp19I	CCATGG	4 cut(s)	887, 975, 1248, 2308
Bsp68I	TCGCGA	1 cut(s)	483
BspACI	CCGC	8 cut(s)	34, 42, 45, 182, 315, 939, 953, 2313
BspANI	GGCC	3 cut(s)	892, 2010, 2357
BspCNI	CTCAG	6 cut(s)	547, 856, 913, 1072, 1288, 2044
BspEI	TCCGGA	3 cut(s)	878, 1848, 2389
BspFNI	CGCG	2 cut(s)	483, 1944
BspLI	GGNNCC	6 cut(s)	270, 313, 1408, 1515, 1761, 2410
BspMI	ACCTGC	2 cut(s)	493, 1004
BspPI	GGATC	6 cut(s)	148, 290, 699, 798, 1754, 1767
BspQI	GCTCTTC	1 cut(s)	877
BspT107I	GGYRCC	1 cut(s)	2408
BsrDI	GCAATG	5 cut(s)	1650, 2026, 2253, 2304, 2412
BsrFI	RCCGGY	2 cut(s)	56, 635
BsrGI	TGTACA	1 cut(s)	1861
BsrI	ACTGG	3 cut(s)	544, 719, 1971
BssAI	RCCGGY	2 cut(s)	56, 635
BssECI	CCNNGG	9 cut(s)	185, 362, 887, 975, 1248, 1380, 2011, 2233, 2308
BssMI	GATC	9 cut(s)	140, 295, 691, 790, 1147, 1234, 1491, 1759, 1833
BssNI	GRCGYC	2 cut(s)	24, 478
BssT1I	CCWWGG	4 cut(s)	887, 975, 1248, 2308
Bst2UI	CCWGG	5 cut(s)	230, 364, 1381, 1857, 2013
Bst4CI	ACNGT	7 cut(s)	88, 259, 761, 1297, 1532, 1827, 1885
Bst6I	CTCTTC	2 cut(s)	877, 2089
BstACI	GRCGYC	2 cut(s)	24, 478
BstAUI	TGTACA	1 cut(s)	1861
BstC8I	GCNNGC	8 cut(s)	384, 388, 551, 955, 1011, 1329, 1917, 2320
BstDSI	CCRYGG	5 cut(s)	887, 975, 1248, 2233, 2308
BstENI	CCTNNNNNAGG	2 cut(s)	1092, 1545
BstF5I	GGATG	6 cut(s)	679, 875, 1084, 1300, 1664, 2398
BstFNI	CGCG	2 cut(s)	483, 1944
BstH2I	RGCGCY	2 cut(s)	1455, 2319
BstHHI	GCGC	4 cut(s)	348, 1454, 1538, 2318
BstKTI	GATC	9 cut(s)	143, 298, 694, 793, 1150, 1237, 1494, 1762, 1836
BstMAI	GTCTC	2 cut(s)	94, 2029
BstMBI	GATC	9 cut(s)	140, 295, 691, 790, 1147, 1234, 1491, 1759, 1833
BstMWI	GCNNNNNNNGC	6 cut(s)	1010, 1081, 1382, 2081, 2258, 2319
BstNI	CCWGG	5 cut(s)	230, 364, 1381, 1857, 2013
BstNSI	RCATGY	2 cut(s)	1013, 1919
BstPAI	GACNNNNGTC	1 cut(s)	2337
BstSCI	CCNGG	7 cut(s)	184, 228, 362, 370, 1379, 1855, 2011
BstSFI	CTRYAG	3 cut(s)	258, 961, 2429
BstSLI	GKGCMC	1 cut(s)	1006
BstUI	CGCG	2 cut(s)	483, 1944
BstV1I	GCAGC	7 cut(s)	117, 420, 610, 1363, 1795, 2035, 2207
BstV2I	GAAGAC	1 cut(s)	2319
BstX2I	RGATCY	1 cut(s)	1759
BstXI	CCANNNNNNTGG	1 cut(s)	2182
BstYI	RGATCY	1 cut(s)	1759
BsuRI	GGCC	3 cut(s)	892, 2010, 2357
BtgI	CCRYGG	5 cut(s)	887, 975, 1248, 2233, 2308
BtgZI	GCGATG	1 cut(s)	414
BtrI	CACGTC	1 cut(s)	1979
BtsCI	GGATG	6 cut(s)	679, 875, 1084, 1300, 1664, 2398
BtsIMutI	CAGTG	3 cut(s)	537, 908, 1302
BtuMI	TCGCGA	1 cut(s)	483
BveI	ACCTGC	2 cut(s)	493, 1004
Cac8I	GCNNGC	8 cut(s)	384, 388, 551, 955, 1011, 1329, 1917, 2320
CaiI	CAGNNNCTG	1 cut(s)	854
CfoI	GCGC	4 cut(s)	348, 1454, 1538, 2318
Cfr10I	RCCGGY	2 cut(s)	56, 635
Cfr13I	GGNCC	5 cut(s)	972, 1407, 2009, 2355, 2387
CseI	GACGC	4 cut(s)	32, 138, 467, 1933
Csp6I	GTAC	4 cut(s)	291, 1862, 1940, 2409
CviQI	GTAC	4 cut(s)	291, 1862, 1940, 2409
DpnI	GATC	9 cut(s)	142, 297, 693, 792, 1149, 1236, 1493, 1761, 1835
DpnII	GATC	9 cut(s)	140, 295, 691, 790, 1147, 1234, 1491, 1759, 1833
Eam1104I	CTCTTC	2 cut(s)	877, 2089
EarI	CTCTTC	2 cut(s)	877, 2089
Ecl136II	GAGCTC	2 cut(s)	13, 1327
Eco130I	CCWWGG	4 cut(s)	887, 975, 1248, 2308
Eco24I	GRGCYC	4 cut(s)	15, 1329, 1516, 2086
Eco32I	GATATC	2 cut(s)	1481, 1846
Eco47I	GGWCC	3 cut(s)	972, 1407, 2387
Eco53kI	GAGCTC	2 cut(s)	13, 1327
Eco57I	CTGAAG	4 cut(s)	606, 972, 1164, 1403
EcoICRI	GAGCTC	2 cut(s)	13, 1327
EcoNI	CCTNNNNNAGG	2 cut(s)	1092, 1545
EcoRI	GAATTC	2 cut(s)	224, 1259
EcoRII	CCWGG	5 cut(s)	228, 362, 1379, 1855, 2011
EcoRV	GATATC	2 cut(s)	1481, 1846
EcoT14I	CCWWGG	4 cut(s)	887, 975, 1248, 2308
EcoT22I	ATGCAT	1 cut(s)	1048
EcoT38I	GRGCYC	4 cut(s)	15, 1329, 1516, 2086
ErhI	CCWWGG	4 cut(s)	887, 975, 1248, 2308
Esp3I	CGTCTC	1 cut(s)	94
FaqI	GGGAC	5 cut(s)	665, 1146, 1166, 1420, 1931
FauI	CCCGC	1 cut(s)	946
FblI	GTMKAC	5 cut(s)	357, 725, 1280, 1702, 1771
FokI	GGATG	6 cut(s)	666, 862, 1071, 1287, 1651, 2405
FriOI	GRGCYC	4 cut(s)	15, 1329, 1516, 2086
FspBI	CTAG	3 cut(s)	464, 2165, 2243
GlaI	GCGC	4 cut(s)	347, 1453, 1537, 2317
GsaI	CCCAGC	2 cut(s)	1009, 1952
GsuI	CTGGAG	2 cut(s)	1839, 2210
HaeII	RGCGCY	2 cut(s)	1455, 2319
HaeIII	GGCC	3 cut(s)	892, 2010, 2357
HapII	CCGG	9 cut(s)	57, 185, 266, 371, 636, 879, 1630, 1849, 2390
HgaI	GACGC	4 cut(s)	32, 138, 467, 1933
HhaI	GCGC	4 cut(s)	348, 1454, 1538, 2318
Hin1I	GRCGYC	2 cut(s)	24, 478
Hin6I	GCGC	4 cut(s)	346, 1452, 1536, 2316
HinP1I	GCGC	4 cut(s)	346, 1452, 1536, 2316
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	8 cut(s)	115, 617, 835, 851, 1067, 1626, 1712, 1852
HpaII	CCGG	9 cut(s)	57, 185, 266, 371, 636, 879, 1630, 1849, 2390
HphI	GGTGA	5 cut(s)	46, 76, 554, 1007, 1028
Hpy99I	CGWCG	3 cut(s)	26, 154, 483
HpyAV	CCTTC	7 cut(s)	335, 539, 824, 849, 1157, 1967, 2010
HpyCH4III	ACNGT	7 cut(s)	88, 259, 761, 1297, 1532, 1827, 1885
HpyCH4IV	ACGT	5 cut(s)	51, 165, 447, 1288, 1978
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1010, 1081, 1382, 2081, 2258, 2319
HpySE526I	ACGT	5 cut(s)	51, 165, 447, 1288, 1978
Hsp92I	GRCGYC	2 cut(s)	24, 478
HspAI	GCGC	4 cut(s)	346, 1452, 1536, 2316
Kpn2I	TCCGGA	3 cut(s)	878, 1848, 2389
KpnI	GGTACC	1 cut(s)	2412
Kzo9I	GATC	9 cut(s)	140, 295, 691, 790, 1147, 1234, 1491, 1759, 1833
LguI	GCTCTTC	1 cut(s)	877
LmnI	GCTCC	5 cut(s)	36, 146, 1324, 1519, 2045
Lsp1109I	GCAGC	7 cut(s)	117, 420, 610, 1363, 1795, 2035, 2207
LweI	GCATC	9 cut(s)	437, 442, 950, 966, 1093, 1309, 1663, 1673, 1891
MaeI	CTAG	3 cut(s)	464, 2165, 2243
MaeII	ACGT	5 cut(s)	51, 165, 447, 1288, 1978
MaeIII	GTNAC	5 cut(s)	52, 591, 631, 1016, 2019
MalI	GATC	9 cut(s)	142, 297, 693, 792, 1149, 1236, 1493, 1761, 1835
MboI	GATC	9 cut(s)	140, 295, 691, 790, 1147, 1234, 1491, 1759, 1833
MboII	GAAGA	9 cut(s)	227, 580, 612, 626, 864, 1157, 1244, 2106, 2319
MflI	RGATCY	1 cut(s)	1759
MhlI	GDGCHC	6 cut(s)	15, 1006, 1329, 1516, 1879, 2086
MluCI	AATT	8 cut(s)	79, 224, 719, 945, 1027, 1202, 1259, 1395
MluI	ACGCGT	1 cut(s)	1942
MlyI	GAGTC	1 cut(s)	1846
MmeI	TCCRAC	3 cut(s)	143, 1197, 1271
Mph1103I	ATGCAT	1 cut(s)	1048
MroI	TCCGGA	3 cut(s)	878, 1848, 2389
MroXI	GAANNNNTTC	2 cut(s)	278, 834
MseI	TTAA	1 cut(s)	1319
MslI	CAYNNNNRTG	3 cut(s)	1014, 1914, 2297
MspA1I	CMGCKG	1 cut(s)	2198
MspI	CCGG	9 cut(s)	57, 185, 266, 371, 636, 879, 1630, 1849, 2390
MspR9I	CCNGG	7 cut(s)	186, 230, 364, 372, 1381, 1857, 2013
Mva1269I	GAATGC	2 cut(s)	436, 705
MvaI	CCWGG	5 cut(s)	230, 364, 1381, 1857, 2013
MvnI	CGCG	2 cut(s)	483, 1944
MwoI	GCNNNNNNNGC	6 cut(s)	1010, 1081, 1382, 2081, 2258, 2319
NciI	CCSGG	2 cut(s)	186, 372
NcoI	CCATGG	4 cut(s)	887, 975, 1248, 2308
NdeII	GATC	9 cut(s)	140, 295, 691, 790, 1147, 1234, 1491, 1759, 1833
NlaIV	GGNNCC	6 cut(s)	270, 313, 1408, 1515, 1761, 2410
NmuCI	GTSAC	2 cut(s)	52, 1016
NruI	TCGCGA	1 cut(s)	483
NsiI	ATGCAT	1 cut(s)	1048
NspI	RCATGY	2 cut(s)	1013, 1919
PaeI	GCATGC	2 cut(s)	1013, 1919
PaqCI	CACCTGC	1 cut(s)	1004
PciSI	GCTCTTC	1 cut(s)	877
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PctI	GAATGC	2 cut(s)	436, 705
PdmI	GAANNNNTTC	2 cut(s)	278, 834
PfeI	GAWTC	7 cut(s)	115, 617, 835, 851, 1067, 1626, 1712
PleI	GAGTC	1 cut(s)	1846
PpsI	GAGTC	1 cut(s)	1846
PshAI	GACNNNNGTC	1 cut(s)	2337
Psp124BI	GAGCTC	2 cut(s)	15, 1329
Psp6I	CCWGG	5 cut(s)	228, 362, 1379, 1855, 2011
PspFI	CCCAGC	2 cut(s)	1005, 1948
PspGI	CCWGG	5 cut(s)	228, 362, 1379, 1855, 2011
PspN4I	GGNNCC	6 cut(s)	270, 313, 1408, 1515, 1761, 2410
PspPI	GGNCC	5 cut(s)	972, 1407, 2009, 2355, 2387
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	1759
PvuII	CAGCTG	1 cut(s)	2198
RruI	TCGCGA	1 cut(s)	483
RsaI	GTAC	4 cut(s)	292, 1863, 1941, 2410
RsaNI	GTAC	4 cut(s)	291, 1862, 1940, 2409
RseI	CAYNNNNRTG	3 cut(s)	1014, 1914, 2297
SacI	GAGCTC	2 cut(s)	15, 1329
SalI	GTCGAC	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	877
SaqAI	TTAA	1 cut(s)	1319
Sau3AI	GATC	9 cut(s)	140, 295, 691, 790, 1147, 1234, 1491, 1759, 1833
Sau96I	GGNCC	5 cut(s)	972, 1407, 2009, 2355, 2387
SchI	GAGTC	1 cut(s)	1846
ScrFI	CCNGG	7 cut(s)	186, 230, 364, 372, 1381, 1857, 2013
SduI	GDGCHC	6 cut(s)	15, 1006, 1329, 1516, 1879, 2086
SfaNI	GCATC	9 cut(s)	437, 442, 950, 966, 1093, 1309, 1663, 1673, 1891
SfcI	CTRYAG	3 cut(s)	258, 961, 2429
SinI	GGWCC	3 cut(s)	972, 1407, 2387
SmiMI	CAYNNNNRTG	3 cut(s)	1014, 1914, 2297
SmlI	CTYRAG	2 cut(s)	1106, 1616
SmoI	CTYRAG	2 cut(s)	1106, 1616
SphI	GCATGC	2 cut(s)	1013, 1919
Sse9I	AATT	8 cut(s)	79, 224, 719, 945, 1027, 1202, 1259, 1395
SsiI	CCGC	8 cut(s)	34, 42, 45, 182, 315, 939, 953, 2313
SspI	AATATT	1 cut(s)	1960
SspMI	CTAG	3 cut(s)	464, 2165, 2243
SstI	GAGCTC	2 cut(s)	15, 1329
StyD4I	CCNGG	7 cut(s)	184, 228, 362, 370, 1379, 1855, 2011
StyI	CCWWGG	4 cut(s)	887, 975, 1248, 2308
TaaI	ACNGT	7 cut(s)	88, 259, 761, 1297, 1532, 1827, 1885
TaiI	ACGT	5 cut(s)	54, 168, 450, 1291, 1981
TaqI	TCGA	8 cut(s)	15, 21, 113, 152, 357, 694, 1686, 2155
TasI	AATT	8 cut(s)	79, 224, 719, 945, 1027, 1202, 1259, 1395
TatI	WGTACW	2 cut(s)	290, 1861
TauI	GCSGC	5 cut(s)	44, 47, 184, 941, 2316
TfiI	GAWTC	7 cut(s)	115, 617, 835, 851, 1067, 1626, 1712
Tru1I	TTAA	1 cut(s)	1319
Tru9I	TTAA	1 cut(s)	1319
TscAI	CASTG	3 cut(s)	544, 908, 1302
TseFI	GTSAC	2 cut(s)	52, 1016
TseI	GCWGC	7 cut(s)	130, 433, 598, 1376, 1808, 2048, 2195
Tsp45I	GTSAC	2 cut(s)	52, 1016
TspDTI	ATGAA	6 cut(s)	170, 668, 864, 1216, 1704, 2409
TspGWI	ACGGA	2 cut(s)	923, 1491
TspRI	CASTG	3 cut(s)	544, 908, 1302
VpaK11BI	GGWCC	3 cut(s)	972, 1407, 2387
XagI	CCTNNNNNAGG	2 cut(s)	1092, 1545
XapI	RAATTY	2 cut(s)	224, 1259
XceI	RCATGY	2 cut(s)	1013, 1919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2315
XmiI	GTMKAC	5 cut(s)	357, 725, 1280, 1702, 1771
XmnI	GAANNNNTTC	2 cut(s)	278, 834
XspI	CTAG	3 cut(s)	464, 2165, 2243
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.