Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Reverse (-)

44056051 .. 44068595

Gene Structure 12545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG304700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTAACGAGCTCGACCTCGACGCTTTGCTCCGCTACGCCGCCGCTAACGTCACCGGCTTTCCTCCCTCGTCGTCAAATTTCACCTTCTCTAGGTTCGGGCATGGACAATCGAATCCGACTTATCTGATGCAAGTAGGATCCGGAGCGTCGGTGAAACGCTATGTTTTGAGAAAGAAGCCGCCGGGGAAGTTGCTTCATTCTGCACATGCTGTGGAGAGAGAATTCCAGGTTCTTCAAGCATTGGGTAATCATACTGTAGTTCCAGTTCCGAAAGTTTTCTGTTTGTGTACTGATCCAAGCGTGATTGGAACCGCTTTTTACATCATGGAGTTTTTGGAAGGGCGCATTTTTGTTAACCCCAGGCTACCGGATGACAAAGCTGATTTGATTCTCAAGTACATGCCTGATGAGCCTAGGCCGCTGAAGCTTAGGATGAAGGTGGTGCTGATGCATGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

154

Amino Acids

17.16

Weight (kDa)

9.36

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	30 - 126	5.8e-19	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	6 cut(s)	34, 42, 45, 182, 315, 422
AclWI	GGATC	3 cut(s)	135, 148, 290
AcsI	RAATTY	2 cut(s)	79, 224
AcuI	CTGAAG	1 cut(s)	446
AfaI	GTAC	2 cut(s)	292, 401
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	228, 362
AluBI	AGCT	3 cut(s)	13, 383, 430
AluI	AGCT	3 cut(s)	13, 383, 430
Alw21I	GWGCWC	1 cut(s)	15
AlwI	GGATC	3 cut(s)	135, 148, 290
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	1 cut(s)	419
ApoI	RAATTY	2 cut(s)	79, 224
Asp700I	GAANNNNTTC	1 cut(s)	278
AspA2I	CCTAGG	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	348
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	46, 76, 166
AvrII	CCTAGG	1 cut(s)	416
BamHI	GGATCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BciT130I	CCWGG	2 cut(s)	230, 364
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	2 cut(s)	93, 417
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	4 cut(s)	42, 45, 182, 422
BlnI	CCTAGG	1 cut(s)	416
BlsI	GCNGC	4 cut(s)	43, 46, 183, 423
Bme1390I	CCNGG	3 cut(s)	186, 230, 364
BmiI	GGNNCC	2 cut(s)	142, 313
BmrFI	CCNGG	3 cut(s)	186, 230, 364
BmsI	GCATC	2 cut(s)	120, 441
Bpu10I	CCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	185, 362, 416
BsaWI	WCCGGW	2 cut(s)	143, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	230, 364
BseDI	CCNNGG	3 cut(s)	185, 362, 416
BseGI	GGATG	2 cut(s)	379, 441
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	57, 144, 185, 371
BslI	CCNNNNNNNGG	1 cut(s)	93
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	140, 295
BspACI	CCGC	6 cut(s)	34, 42, 45, 182, 315, 422
BspANI	GGCC	1 cut(s)	421
BspEI	TCCGGA	1 cut(s)	143
BspLI	GGNNCC	2 cut(s)	142, 313
BspPI	GGATC	3 cut(s)	135, 148, 290
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	185, 362, 416
BssMI	GATC	2 cut(s)	140, 295
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	2 cut(s)	230, 364
Bst4CI	ACNGT	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	431
BstENI	CCTNNNNNAGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	379, 441
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	143, 298
BstMBI	GATC	2 cut(s)	140, 295
BstMWI	GCNNNNNNNGC	3 cut(s)	412, 421, 427
BstNI	CCWGG	2 cut(s)	230, 364
BstNSI	RCATGY	2 cut(s)	212, 406
BstSCI	CCNGG	3 cut(s)	184, 228, 362
BstSFI	CTRYAG	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	421
BtsCI	GGATG	2 cut(s)	379, 441
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	56
CseI	GACGC	2 cut(s)	32, 138
Csp6I	GTAC	2 cut(s)	291, 400
CviAII	CATG	5 cut(s)	104, 209, 328, 403, 455
CviJI	RGCY	9 cut(s)	5, 13, 60, 181, 367, 383, 415, 421, 430
CviKI_1	RGCY	9 cut(s)	5, 13, 60, 181, 367, 383, 415, 421, 430
CviQI	GTAC	2 cut(s)	291, 400
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	2 cut(s)	142, 297
DpnII	GATC	2 cut(s)	140, 295
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	228, 362
EcoT14I	CCWWGG	1 cut(s)	416
EcoT22I	ATGCAT	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	5 cut(s)	107, 212, 331, 406, 458
FaiI	YATR	7 cut(s)	105, 165, 210, 255, 329, 404, 456
FatI	CATG	5 cut(s)	103, 208, 327, 402, 454
Fnu4HI	GCNGC	4 cut(s)	42, 45, 182, 422
FokI	GGATG	2 cut(s)	386, 448
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	4 cut(s)	42, 45, 182, 422
FspBI	CTAG	2 cut(s)	93, 417
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	4 cut(s)	42, 45, 182, 422
HaeIII	GGCC	1 cut(s)	421
HapII	CCGG	4 cut(s)	57, 144, 185, 371
HgaI	GACGC	2 cut(s)	32, 138
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	5 cut(s)	107, 212, 331, 406, 458
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	2 cut(s)	115, 391
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	4 cut(s)	57, 144, 185, 371
HphI	GGTGA	3 cut(s)	46, 76, 166
Hpy166II	GTNNAC	2 cut(s)	291, 358
Hpy188I	TCNGA	3 cut(s)	120, 129, 273
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	2 cut(s)	291, 358
Hpy99I	CGWCG	3 cut(s)	26, 76, 154
HpyAV	CCTTC	3 cut(s)	97, 335, 433
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	3 cut(s)	133, 206, 454
HpyF10VI	GCNNNNNNNGC	3 cut(s)	412, 421, 427
HpyF3I	CTNAG	1 cut(s)	431
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	5 cut(s)	107, 212, 331, 406, 458
HspAI	GCGC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	143
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	140, 295
LmnI	GCTCC	2 cut(s)	36, 146
LweI	GCATC	2 cut(s)	120, 441
MaeI	CTAG	2 cut(s)	93, 417
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	142, 297
MboI	GATC	2 cut(s)	140, 295
MboII	GAAGA	1 cut(s)	227
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	79, 224
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	3 cut(s)	29, 75, 79
Mph1103I	ATGCAT	1 cut(s)	456
MroI	TCCGGA	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	4 cut(s)	57, 144, 185, 371
MspR9I	CCNGG	3 cut(s)	186, 230, 364
MvaI	CCWGG	2 cut(s)	230, 364
MwoI	GCNNNNNNNGC	3 cut(s)	412, 421, 427
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	2 cut(s)	140, 295
NlaIII	CATG	5 cut(s)	107, 212, 331, 406, 458
NlaIV	GGNNCC	2 cut(s)	142, 313
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	2 cut(s)	212, 406
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	115, 391
PkrI	GCNGC	4 cut(s)	43, 46, 183, 423
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	228, 362
PspGI	CCWGG	2 cut(s)	228, 362
PspN4I	GGNNCC	2 cut(s)	142, 313
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	2 cut(s)	292, 401
RsaNI	GTAC	2 cut(s)	291, 400
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	4 cut(s)	42, 45, 182, 422
Sau3AI	GATC	2 cut(s)	140, 295
ScrFI	CCNGG	3 cut(s)	186, 230, 364
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	9 cut(s)	15, 21, 54, 89, 98, 234, 385, 432, 444
SfaNI	GCATC	2 cut(s)	120, 441
SfcI	CTRYAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	79, 224
SsiI	CCGC	6 cut(s)	34, 42, 45, 182, 315, 422
SspMI	CTAG	2 cut(s)	93, 417
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	3 cut(s)	184, 228, 362
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	3 cut(s)	15, 21, 113
TasI	AATT	2 cut(s)	79, 224
TatI	WGTACW	2 cut(s)	290, 399
TauI	GCSGC	4 cut(s)	44, 47, 184, 424
TfiI	GAWTC	2 cut(s)	115, 391
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	188, 452
XagI	CCTNNNNNAGG	1 cut(s)	91
XapI	RAATTY	2 cut(s)	79, 224
XceI	RCATGY	2 cut(s)	212, 406
XmaJI	CCTAGG	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	2 cut(s)	93, 417
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.