Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Reverse (-)

26445904 .. 26446670

Gene Structure 767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44564

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTAACGACCTCGACCTCGACGCTTTGCTCCGCTACGCCGCCTCTAATGTCACCGGCTTTCCTCCCTCACCGTCCAATTTCACCTTCTCTAAGTTCGAGCATGGACAATTGAATCCGACTTATCTGATGCAAGTAGGATCCGGAGCGTCGGTAAAACGCTACGTTTTGAGAAAGAAGCCGCCGGGGAAGTTGCTTCAGTCTGCTCATGCTGTGGAGAGAGAATTCCAGGTTCTTCAAGCATTGGGTAATCATACTGTAGTTCCGGTTCCGAAAGTTTTCTGTTTGTGTACTGATCCAAGTGTGATTGGAACCGCTTTTTACATCATGGAGTTTTTGGAATGGCGAATTTTTGTTAACCCCAAGCTCCCGATATTAGTTTTTGATTTGGGACTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

133

Amino Acids

14.8

Weight (kDa)

8.49

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	30 - 120	1.2e-15	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	4 cut(s)	34, 42, 182, 315
AclWI	GGATC	3 cut(s)	135, 148, 290
AcsI	RAATTY	2 cut(s)	224, 348
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	115, 239
AjnI	CCWGG	1 cut(s)	228
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
AlwI	GGATC	3 cut(s)	135, 148, 290
Aor13HI	TCCGGA	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	224, 348
Asp700I	GAANNNNTTC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	46, 63, 76
BamHI	GGATCC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	2 cut(s)	42, 182
BlsI	GCNGC	2 cut(s)	43, 183
Bme1390I	CCNGG	2 cut(s)	186, 230
BmiI	GGNNCC	3 cut(s)	142, 270, 313
BmrFI	CCNGG	2 cut(s)	186, 230
BmsI	GCATC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	185
BsaWI	WCCGGW	2 cut(s)	143, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bse118I	RCCGGY	1 cut(s)	56
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	185
BsiSI	CCGG	4 cut(s)	57, 144, 185, 266
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	140, 295
BspACI	CCGC	4 cut(s)	34, 42, 182, 315
BspEI	TCCGGA	1 cut(s)	143
BspLI	GGNNCC	3 cut(s)	142, 270, 313
BspPI	GGATC	3 cut(s)	135, 148, 290
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	140, 295
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	3 cut(s)	75, 259, 396
BstDEI	CTNAG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	143, 298
BstMBI	GATC	2 cut(s)	140, 295
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	184, 228
BstSFI	CTRYAG	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	56
CseI	GACGC	2 cut(s)	32, 138
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	3 cut(s)	104, 209, 328
CviJI	RGCY	4 cut(s)	5, 60, 181, 367
CviKI_1	RGCY	4 cut(s)	5, 60, 181, 367
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	142, 297
DpnII	GATC	2 cut(s)	140, 295
Eco57I	CTGAAG	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	228
FaeI	CATG	3 cut(s)	107, 212, 331
FaiI	YATR	4 cut(s)	105, 210, 255, 329
FatI	CATG	3 cut(s)	103, 208, 327
Fnu4HI	GCNGC	2 cut(s)	42, 182
Fsp4HI	GCNGC	2 cut(s)	42, 182
GluI	GCNGC	2 cut(s)	42, 182
HapII	CCGG	4 cut(s)	57, 144, 185, 266
HgaI	GACGC	2 cut(s)	32, 138
Hin1II	CATG	3 cut(s)	107, 212, 331
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	1 cut(s)	115
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	4 cut(s)	57, 144, 185, 266
HphI	GGTGA	3 cut(s)	46, 63, 76
Hpy166II	GTNNAC	2 cut(s)	291, 358
Hpy188I	TCNGA	3 cut(s)	120, 129, 273
Hpy188III	TCNNGA	2 cut(s)	144, 370
Hpy8I	GTNNAC	2 cut(s)	291, 358
Hpy99I	CGWCG	2 cut(s)	26, 154
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	3 cut(s)	75, 259, 396
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	107, 212, 331
Kpn2I	TCCGGA	1 cut(s)	143
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	140, 295
LmnI	GCTCC	3 cut(s)	36, 146, 372
LpnPI	CCDG	6 cut(s)	70, 157, 198, 215, 242, 279
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	142, 297
MboI	GATC	2 cut(s)	140, 295
MboII	GAAGA	1 cut(s)	227
MfeI	CAATTG	1 cut(s)	110
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	4 cut(s)	79, 110, 224, 348
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	23, 29, 55, 75, 79
MroI	TCCGGA	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	357, 400
MspI	CCGG	4 cut(s)	57, 144, 185, 266
MspR9I	CCNGG	2 cut(s)	186, 230
MunI	CAATTG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	230
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	2 cut(s)	140, 295
NlaIII	CATG	3 cut(s)	107, 212, 331
NlaIV	GGNNCC	3 cut(s)	142, 270, 313
NmuCI	GTSAC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	43, 183
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	3 cut(s)	142, 270, 313
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	357, 400
SatI	GCNGC	2 cut(s)	42, 182
Sau3AI	GATC	2 cut(s)	140, 295
ScrFI	CCNGG	2 cut(s)	186, 230
SetI	ASST	6 cut(s)	15, 21, 89, 168, 234, 369
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	258
Sse9I	AATT	4 cut(s)	79, 110, 224, 348
SsiI	CCGC	4 cut(s)	34, 42, 182, 315
StyD4I	CCNGG	2 cut(s)	184, 228
TaaI	ACNGT	3 cut(s)	75, 259, 396
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	15, 21, 99
TasI	AATT	4 cut(s)	79, 110, 224, 348
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	2 cut(s)	44, 184
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	357, 400
Tru9I	TTAA	2 cut(s)	357, 400
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
XapI	RAATTY	2 cut(s)	224, 348
XmnI	GAANNNNTTC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.