Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Reverse (-)

55800274 .. 55802298

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG246300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTAACGAGATCGACCTCGACGCCTTGCTCCGCTACGCCGCCGCTAATGTCACCGGCTTTCCTCCCTCGCCGTCCAATTTCACCGTCTCTAAGTTCGGGCATGGCCAATCGAATCCGACTTATCTGATGCAAGTAGGATCGGGAGCGTCAGTGAAACGCTACGTTTTGAGAAAGAAGCCGCCGGGGAAGTTGCTTCACTCTGCTCATGCTGTGGAGAGAGAATTCCAGGTTCTTCAAGCATTGGATAATCATACTGTAGTTCCGGTTCCGAAAGTTTTCTGTTTGTGTACTGATCCAAGCGTGATTGGAACCGCTTTTTACATCATGGAGTTTTTGGAAGGGCGCATTTTTGTCGACCCCAGGCTACCGGGTGTAGAGCCTGCGAGCAGGAGGGCTATTTACCAAGCGACTGCAAAAGCTTTAGCATCGCTGCATTCTGCTGACGTTGATGCCATTGGACTAGGAAACTATGGGCGTCGTGAAAACTATTGTAAACGGCAGGTAGATAGGTGGGCAAAACAATATATTGCTTCCACTGGTGAAGGCAATCCTGAGAGAAATCCGAAGATGTTTGAGCTGATTGATTGGTTACAGCAGCATATTCCTCTTGAAGATTCTTCAGGAGGTGCAACCGGCTTAGTGCATGGGGACTTTCGCCTCGATAATCTTGTGTTTCATCCTATTGAGGATCGAGTGGTTGGCATTCTTGACTGGGAATTGTCTACTCTTGGAAACCAAATGTGTGATGTTGCTTACTGTTCTTTGCCTTACATCACAGACTTGGGGGTTGACAAAGATCAACTTGGTAAAGGTATGGAACATACTGGGCTTCCAGAAGGGATTCCTTCTCAGGCAGAATATGTGGCAGAATACTGCTCTTCATCTGTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

298

Amino Acids

32.77

Weight (kDa)

5.59

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	30 - 255	7.8e-50	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AccI	GTMKAC	2 cut(s)	357, 725
AciI	CCGC	5 cut(s)	34, 42, 45, 182, 315
AclWI	GGATC	3 cut(s)	148, 290, 699
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	2 cut(s)	24, 478
AfaI	GTAC	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	239, 614
AjnI	CCWGG	2 cut(s)	228, 362
AluBI	AGCT	2 cut(s)	422, 580
AluI	AGCT	2 cut(s)	422, 580
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	3 cut(s)	148, 290, 699
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	433, 598
ApoI	RAATTY	1 cut(s)	224
Asp700I	GAANNNNTTC	2 cut(s)	278, 843
AspLEI	GCGC	1 cut(s)	348
AsuC2I	CCSGG	2 cut(s)	186, 372
AsuHPI	GGTGA	3 cut(s)	46, 76, 554
BalI	TGGCCA	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	420, 610
BceAI	ACGGC	2 cut(s)	58, 515
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	2 cut(s)	230, 364
BcnI	CCSGG	2 cut(s)	186, 372
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	5 cut(s)	42, 45, 182, 434, 599
BlsI	GCNGC	5 cut(s)	43, 46, 183, 435, 600
Bme1390I	CCNGG	4 cut(s)	186, 230, 364, 372
BmiI	GGNNCC	2 cut(s)	270, 313
BmrFI	CCNGG	4 cut(s)	186, 230, 364, 372
BmrI	ACTGGG	2 cut(s)	724, 837
BmsI	GCATC	3 cut(s)	120, 437, 442
BmuI	ACTGGG	2 cut(s)	724, 837
BpuMI	CCSGG	2 cut(s)	186, 372
BsaHI	GRCGYC	2 cut(s)	24, 478
BsaJI	CCNNGG	2 cut(s)	185, 362
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bse118I	RCCGGY	2 cut(s)	56, 635
Bse1I	ACTGG	3 cut(s)	544, 719, 832
BseBI	CCWGG	2 cut(s)	230, 364
BseDI	CCNNGG	2 cut(s)	185, 362
BseGI	GGATG	1 cut(s)	679
BseMII	CTCAG	2 cut(s)	546, 866
BseNI	ACTGG	3 cut(s)	544, 719, 832
BseXI	GCAGC	2 cut(s)	420, 610
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	5 cut(s)	57, 185, 266, 371, 636
BslFI	GGGAC	1 cut(s)	665
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	665
BsmI	GAATGC	2 cut(s)	436, 705
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	5 cut(s)	12, 140, 295, 691, 799
BspACI	CCGC	5 cut(s)	34, 42, 45, 182, 315
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	547, 865
BspLI	GGNNCC	2 cut(s)	270, 313
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	3 cut(s)	148, 290, 699
BspQI	GCTCTTC	1 cut(s)	886
BsrFI	RCCGGY	2 cut(s)	56, 635
BsrI	ACTGG	3 cut(s)	544, 719, 832
BssAI	RCCGGY	2 cut(s)	56, 635
BssECI	CCNNGG	2 cut(s)	185, 362
BssMI	GATC	5 cut(s)	12, 140, 295, 691, 799
BssNI	GRCGYC	2 cut(s)	24, 478
Bst2UI	CCWGG	2 cut(s)	230, 364
Bst4CI	ACNGT	3 cut(s)	88, 259, 761
Bst6I	CTCTTC	1 cut(s)	886
BstACI	GRCGYC	2 cut(s)	24, 478
BstC8I	GCNNGC	2 cut(s)	384, 388
BstDEI	CTNAG	4 cut(s)	93, 555, 640, 852
BstF5I	GGATG	1 cut(s)	679
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	5 cut(s)	15, 143, 298, 694, 802
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	5 cut(s)	12, 140, 295, 691, 799
BstNI	CCWGG	2 cut(s)	230, 364
BstSCI	CCNGG	4 cut(s)	184, 228, 362, 370
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	420, 610
BsuRI	GGCC	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	679
BtsIMutI	CAGTG	2 cut(s)	159, 537
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	2 cut(s)	384, 388
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	2 cut(s)	56, 635
CseI	GACGC	3 cut(s)	32, 138, 467
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	4 cut(s)	104, 209, 328, 647
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	4 cut(s)	93, 555, 640, 852
DpnI	GATC	5 cut(s)	14, 142, 297, 693, 801
DpnII	GATC	5 cut(s)	12, 140, 295, 691, 799
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	886
EarI	CTCTTC	1 cut(s)	886
Eco57I	CTGAAG	1 cut(s)	606
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	228, 362
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	4 cut(s)	107, 212, 331, 650
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	4 cut(s)	103, 208, 327, 646
FblI	GTMKAC	2 cut(s)	357, 725
Fnu4HI	GCNGC	5 cut(s)	42, 45, 182, 434, 599
FokI	GGATG	1 cut(s)	666
Fsp4HI	GCNGC	5 cut(s)	42, 45, 182, 434, 599
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	5 cut(s)	42, 45, 182, 434, 599
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	5 cut(s)	57, 185, 266, 371, 636
HgaI	GACGC	3 cut(s)	32, 138, 467
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	2 cut(s)	24, 478
Hin1II	CATG	4 cut(s)	107, 212, 331, 650
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	2 cut(s)	358, 793
HindII	GTYRAC	2 cut(s)	358, 793
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	3 cut(s)	115, 617, 844
HpaII	CCGG	5 cut(s)	57, 185, 266, 371, 636
HphI	GGTGA	3 cut(s)	46, 76, 554
Hpy166II	GTNNAC	5 cut(s)	291, 358, 497, 726, 793
Hpy188I	TCNGA	4 cut(s)	120, 129, 273, 567
Hpy188III	TCNNGA	7 cut(s)	144, 482, 554, 611, 624, 710, 836
Hpy8I	GTNNAC	5 cut(s)	291, 358, 497, 726, 793
Hpy99I	CGWCG	2 cut(s)	26, 483
HpyAV	CCTTC	4 cut(s)	335, 539, 833, 858
HpyCH4III	ACNGT	3 cut(s)	88, 259, 761
HpyCH4IV	ACGT	2 cut(s)	165, 447
HpyCH4V	TGCA	5 cut(s)	133, 416, 436, 632, 646
HpyF3I	CTNAG	4 cut(s)	93, 555, 640, 852
HpySE526I	ACGT	2 cut(s)	165, 447
Hsp92I	GRCGYC	2 cut(s)	24, 478
Hsp92II	CATG	4 cut(s)	107, 212, 331, 650
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	12, 140, 295, 691, 799
LguI	GCTCTTC	1 cut(s)	886
LmnI	GCTCC	2 cut(s)	36, 146
Lsp1109I	GCAGC	2 cut(s)	420, 610
LweI	GCATC	3 cut(s)	120, 437, 442
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	2 cut(s)	165, 447
MaeIII	GTNAC	2 cut(s)	52, 591
MalI	GATC	5 cut(s)	14, 142, 297, 693, 801
MboI	GATC	5 cut(s)	12, 140, 295, 691, 799
MboII	GAAGA	5 cut(s)	227, 580, 612, 626, 873
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	3 cut(s)	79, 224, 719
MluNI	TGGCCA	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	8 cut(s)	29, 75, 79, 387, 618, 620, 671, 682
Mox20I	TGGCCA	1 cut(s)	108
MroXI	GAANNNNTTC	2 cut(s)	278, 843
MscI	TGGCCA	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	108
MspI	CCGG	5 cut(s)	57, 185, 266, 371, 636
MspR9I	CCNGG	4 cut(s)	186, 230, 364, 372
Mva1269I	GAATGC	2 cut(s)	436, 705
MvaI	CCWGG	2 cut(s)	230, 364
NciI	CCSGG	2 cut(s)	186, 372
NdeII	GATC	5 cut(s)	12, 140, 295, 691, 799
NlaIII	CATG	4 cut(s)	107, 212, 331, 650
NlaIV	GGNNCC	2 cut(s)	270, 313
NmuCI	GTSAC	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	886
PctI	GAATGC	2 cut(s)	436, 705
PdmI	GAANNNNTTC	2 cut(s)	278, 843
PfeI	GAWTC	3 cut(s)	115, 617, 844
PkrI	GCNGC	5 cut(s)	43, 46, 183, 435, 600
Psp6I	CCWGG	2 cut(s)	228, 362
PspGI	CCWGG	2 cut(s)	228, 362
PspN4I	GGNNCC	2 cut(s)	270, 313
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SalI	GTCGAC	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	886
SatI	GCNGC	5 cut(s)	42, 45, 182, 434, 599
Sau3AI	GATC	5 cut(s)	12, 140, 295, 691, 799
ScrFI	CCNGG	4 cut(s)	186, 230, 364, 372
SfaNI	GCATC	3 cut(s)	120, 437, 442
SfcI	CTRYAG	1 cut(s)	258
Sse9I	AATT	3 cut(s)	79, 224, 719
SsiI	CCGC	5 cut(s)	34, 42, 45, 182, 315
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	4 cut(s)	184, 228, 362, 370
TaaI	ACNGT	3 cut(s)	88, 259, 761
TaiI	ACGT	2 cut(s)	168, 450
TaqI	TCGA	6 cut(s)	15, 21, 113, 357, 663, 694
TasI	AATT	3 cut(s)	79, 224, 719
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	3 cut(s)	44, 47, 184
TfiI	GAWTC	3 cut(s)	115, 617, 844
TscAI	CASTG	2 cut(s)	159, 544
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	433, 598
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	668, 873
TspRI	CASTG	2 cut(s)	159, 544
XapI	RAATTY	1 cut(s)	224
XmiI	GTMKAC	2 cut(s)	357, 725
XmnI	GAANNNNTTC	2 cut(s)	278, 843
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.