Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Reverse (-)

51465694 .. 51472108

Gene Structure 6415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG260200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGGCTAACGAGCTCGACCTCGAAGCCTTGCTCCGCTACGCCGCCGCTAACGTTACCGGCTTTCCTCCCTCGCCGTCCAATTTCACCGTCTCTAAGTTCGGGCATGGCCAATCGAATCCGACTTATCTGATGCAAGTAGGATCGGGAGCGTCGGTGAAACGCTACGTTTTGAGAAAGAAGCCGCCGGGGAAGCTGCTTCAGTCTGCTCATGCTGTGGAGAGAGAATTCCAGGTTCTTCAAGCATTGGGTAATCATACTGTAGTTCCGGTTCCGAAAGTTTTCTGTTTGTGTACTGATCCAAGCGTGATTGGAACCGCTTTTTACATCATGGAGTTTTTGGAAGGGCGCATTTTTGTCGACCCCAGGCTACCGGGTGTAGAACCTGCGAGCAGGAGGGCTATTTACCAAGCGACTGCAAAAGCTTTAGCATCGCTGCATTCTGCTGACGTTGATGCCATTGGACTAGGAAACTATGGGCGTCGTGAAAACTATTGTAAACGGCAGGTAGAGAGGTGGGCAAAACAATATATTGCCTCCACTGGTGAAGGCAAGCCTGAGAGAAATCCGAAGATGTTTGAGCTGATTGATTGGTTACAGCAGCATATTCCTCTTGAAGATTCTTCAGGAGGTGCAACCGGCTTAGTGCATGGGGACTTTCGCCTCGATAATCTTGTGTTTCATCCTATTGAGGATCGAGTGGTTGGCATTCTTGACTGGGAATTGTCTACTCTTGGAAACCAAATGTGTGATGTTGCTTACTGTTCTTTGCCTTACATCACAGACTTGGGGGTTGACAATGATCAACTTGGTAAAGGTATGGAACATACTGGGCTTCCAGAAGGGATTCCTTCTCAGGCAGAATATGTGGCAGAATACTGCTCTTCATCTGGAAAGCCATGGCCTTTTGCTCAGTGGAAGTTTTATATAGCATTTTCTTTATTCCGTGGCGCATCAATTTATGCGGGCATCTATAGTAGATGGACCATGGGTAATGCTTCAGGAGGTGAGAGTGCCCAGCATGCAGGTGACAAAGCTAATTTTCTTATAGACTATGCATGGGCATTTGTTAGACGAGAATCTGTGCTTCCTGAGCATCCTCCATCAGGGTCTTTTGTTGCTCAAAACTGCTTGAAAAGATTGGGACAAGAGAGTGAAGATCAAGGATTTTCAGAAGGGGGAGGAAAGTTTGTCCCCAGTAAAAGGATTTTAGAATTGAGAAAAAGGTTGGTCAAGTTCATGGAAGATCACATATATCCCATGGAAAAAGAATTCTACAAACTTGCTCAGTCTACCTCACGTTGGACAGTGCATCCAGAGGAGGAGAAGTTAAAGGAGCTCGCAAAGAAAGAAGGCCTATGGAACTTATTTATACCTTTTGATAGTGCTGCCAGGGCAAAAAAATTAATTTTTGATGGGACCAATCAACTTCAGTCAGATGATACATACAATCAGTTATTGGGCGCTGGTCTTTCAAACCTTGAATACGGATATCTTTGTGAGATCATGGGTCGTTCTATTTGGGCTCCACAAGTGTTCAACTGTGGCGCACCTGATACAGGAAATATGGAGGTCTTGTTGCGTTATGGGAACAAAGAACAACTACTTGAATGGCTTATTCCTTTACTTGAGGGGAGAATCCGGTCAGGATTTGCAATGACAGAACCCCAAGTTGCATCCTCTGATGCAACTAACATCGAGTGTTCTATTAGTAGACAAGGAGATTCATATATTATCAATGGAAAAAAATGGTGGACAAGTGGGGCTATGGATCCAAGATGTAGACTTCTTATAGTCATGGTTTGTTCTTCTTCTTGTATGTCATTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

609

Amino Acids

67.94

Weight (kDa)

6.23

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	30 - 255	1.2e-48	Phosphotransferase enzyme family
Acyl-CoA_dh_M	PF02770	549 - 599	3.3e-09	Acyl-CoA dehydrogenase, middle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1013
Acc36I	ACCTGC	3 cut(s)	391, 493, 1013
AccI	GTMKAC	5 cut(s)	357, 725, 1289, 1711, 1780
AciI	CCGC	6 cut(s)	34, 42, 45, 182, 315, 962
AclI	AACGTT	1 cut(s)	51
AclWI	GGATC	5 cut(s)	148, 290, 699, 1763, 1776
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	224, 1268
AcuI	CTGAAG	4 cut(s)	182, 606, 981, 1412
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	4 cut(s)	1103, 1200, 1299, 1556
AgsI	TTSAA	7 cut(s)	239, 614, 1132, 1473, 1481, 1537, 1607
AjnI	CCWGG	3 cut(s)	228, 362, 1388
AluBI	AGCT	6 cut(s)	13, 193, 422, 580, 1034, 1336
AluI	AGCT	6 cut(s)	13, 193, 422, 580, 1034, 1336
Alw21I	GWGCWC	2 cut(s)	15, 1338
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	5 cut(s)	148, 290, 699, 1763, 1776
AoxI	GGCC	3 cut(s)	106, 899, 1351
ApeKI	GCWGC	4 cut(s)	193, 433, 598, 1385
ApoI	RAATTY	2 cut(s)	224, 1268
AseI	ATTAAT	1 cut(s)	1403
Asp700I	GAANNNNTTC	2 cut(s)	278, 843
AspLEI	GCGC	4 cut(s)	348, 950, 1463, 1547
AspS9I	GGNCC	2 cut(s)	981, 1416
AsuC2I	CCSGG	2 cut(s)	186, 372
AsuHPI	GGTGA	5 cut(s)	76, 166, 554, 1016, 1037
AvaII	GGWCC	2 cut(s)	981, 1416
BaeGI	GKGCMC	1 cut(s)	1015
BalI	TGGCCA	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	1768
BanII	GRGCYC	3 cut(s)	15, 1338, 1525
Bbv12I	GWGCWC	2 cut(s)	15, 1338
BbvI	GCAGC	4 cut(s)	180, 420, 610, 1372
BccI	CCATC	3 cut(s)	972, 1108, 1406
BceAI	ACGGC	2 cut(s)	58, 515
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	3 cut(s)	230, 364, 1390
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	2 cut(s)	186, 372
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	2 cut(s)	258, 970
BfoI	RGCGCY	1 cut(s)	1464
BfuAI	ACCTGC	3 cut(s)	391, 493, 1013
BisI	GCNGC	7 cut(s)	42, 45, 182, 194, 434, 599, 1386
BlsI	GCNGC	7 cut(s)	43, 46, 183, 195, 435, 600, 1387
Bme1390I	CCNGG	5 cut(s)	186, 230, 364, 372, 1390
Bme18I	GGWCC	2 cut(s)	981, 1416
BmgT120I	GGNCC	2 cut(s)	981, 1416
BmiI	GGNNCC	5 cut(s)	270, 313, 1417, 1524, 1770
BmrFI	CCNGG	5 cut(s)	186, 230, 364, 372, 1390
BmrI	ACTGGG	3 cut(s)	724, 837, 1188
BmsI	GCATC	9 cut(s)	120, 437, 442, 959, 975, 1102, 1318, 1672, 1682
BmuI	ACTGGG	3 cut(s)	724, 837, 1188
Bpu10I	CCTNAGC	1 cut(s)	1089
BpuEI	CTTGAG	1 cut(s)	1646
BpuMI	CCSGG	2 cut(s)	186, 372
BsaHI	GRCGYC	1 cut(s)	478
BsaJI	CCNNGG	7 cut(s)	185, 362, 896, 943, 984, 1257, 1389
BsaWI	WCCGGW	2 cut(s)	265, 1638
BsaXI	ACNNNNNCTCC	6 cut(s)	138, 168, 1310, 1340, 1559, 1589
Bsc4I	CCNNNNNNNGG	4 cut(s)	1103, 1200, 1299, 1556
Bse118I	RCCGGY	2 cut(s)	56, 635
Bse1I	ACTGG	4 cut(s)	544, 719, 832, 1194
Bse3DI	GCAATG	1 cut(s)	1659
BseBI	CCWGG	3 cut(s)	230, 364, 1390
BseDI	CCNNGG	7 cut(s)	185, 362, 896, 943, 984, 1257, 1389
BseGI	GGATG	4 cut(s)	679, 1093, 1309, 1673
BseLI	CCNNNNNNNGG	4 cut(s)	1103, 1200, 1299, 1556
BseMI	GCAATG	1 cut(s)	1659
BseMII	CTCAG	5 cut(s)	546, 866, 923, 1080, 1298
BseNI	ACTGG	4 cut(s)	544, 719, 832, 1194
BseRI	GAGGAG	2 cut(s)	1331, 1334
BseSI	GKGCMC	1 cut(s)	1015
BseXI	GCAGC	4 cut(s)	180, 420, 610, 1372
BseYI	CCCAGC	1 cut(s)	1014
BshFI	GGCC	3 cut(s)	108, 901, 1353
BsiHKAI	GWGCWC	2 cut(s)	15, 1338
BsiSI	CCGG	6 cut(s)	57, 185, 266, 371, 636, 1639
BslFI	GGGAC	4 cut(s)	665, 1155, 1175, 1429
BslI	CCNNNNNNNGG	4 cut(s)	1103, 1200, 1299, 1556
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	4 cut(s)	665, 1155, 1175, 1429
BsmI	GAATGC	2 cut(s)	436, 705
BsnI	GGCC	3 cut(s)	108, 901, 1353
Bsp1286I	GDGCHC	4 cut(s)	15, 1015, 1338, 1525
Bsp143I	GATC	8 cut(s)	140, 295, 691, 799, 1156, 1243, 1500, 1768
Bsp19I	CCATGG	3 cut(s)	896, 984, 1257
BspACI	CCGC	6 cut(s)	34, 42, 45, 182, 315, 962
BspANI	GGCC	3 cut(s)	108, 901, 1353
BspCNI	CTCAG	5 cut(s)	547, 865, 922, 1081, 1297
BspLI	GGNNCC	5 cut(s)	270, 313, 1417, 1524, 1770
BspMI	ACCTGC	3 cut(s)	391, 493, 1013
BspPI	GGATC	5 cut(s)	148, 290, 699, 1763, 1776
BspQI	GCTCTTC	1 cut(s)	886
BsrDI	GCAATG	1 cut(s)	1659
BsrFI	RCCGGY	2 cut(s)	56, 635
BsrI	ACTGG	4 cut(s)	544, 719, 832, 1194
BssAI	RCCGGY	2 cut(s)	56, 635
BssECI	CCNNGG	7 cut(s)	185, 362, 896, 943, 984, 1257, 1389
BssMI	GATC	8 cut(s)	140, 295, 691, 799, 1156, 1243, 1500, 1768
BssNI	GRCGYC	1 cut(s)	478
BssT1I	CCWWGG	3 cut(s)	896, 984, 1257
Bst2UI	CCWGG	3 cut(s)	230, 364, 1390
Bst4CI	ACNGT	5 cut(s)	88, 259, 761, 1306, 1541
Bst6I	CTCTTC	1 cut(s)	886
BstACI	GRCGYC	1 cut(s)	478
BstC8I	GCNNGC	5 cut(s)	388, 551, 964, 1020, 1338
BstDEI	CTNAG	7 cut(s)	93, 555, 640, 852, 909, 1089, 1284
BstDSI	CCRYGG	4 cut(s)	896, 943, 984, 1257
BstENI	CCTNNNNNAGG	2 cut(s)	1101, 1554
BstF5I	GGATG	4 cut(s)	679, 1093, 1309, 1673
BstH2I	RGCGCY	1 cut(s)	1464
BstHHI	GCGC	4 cut(s)	348, 950, 1463, 1547
BstKTI	GATC	8 cut(s)	143, 298, 694, 802, 1159, 1246, 1503, 1771
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	8 cut(s)	140, 295, 691, 799, 1156, 1243, 1500, 1768
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 1019, 1090, 1391
BstNI	CCWGG	3 cut(s)	230, 364, 1390
BstNSI	RCATGY	1 cut(s)	1022
BstSCI	CCNGG	5 cut(s)	184, 228, 362, 370, 1388
BstSFI	CTRYAG	2 cut(s)	258, 970
BstSLI	GKGCMC	1 cut(s)	1015
BstV1I	GCAGC	4 cut(s)	180, 420, 610, 1372
BstX2I	RGATCY	1 cut(s)	1768
BstYI	RGATCY	1 cut(s)	1768
BsuRI	GGCC	3 cut(s)	108, 901, 1353
BtgI	CCRYGG	4 cut(s)	896, 943, 984, 1257
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	4 cut(s)	679, 1093, 1309, 1673
BtsIMutI	CAGTG	3 cut(s)	537, 917, 1311
BveI	ACCTGC	3 cut(s)	391, 493, 1013
Cac8I	GCNNGC	5 cut(s)	388, 551, 964, 1020, 1338
CfoI	GCGC	4 cut(s)	348, 950, 1463, 1547
Cfr10I	RCCGGY	2 cut(s)	56, 635
Cfr13I	GGNCC	2 cut(s)	981, 1416
CseI	GACGC	2 cut(s)	138, 467
Csp6I	GTAC	1 cut(s)	291
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	7 cut(s)	93, 555, 640, 852, 909, 1089, 1284
DpnI	GATC	8 cut(s)	142, 297, 693, 801, 1158, 1245, 1502, 1770
DpnII	GATC	8 cut(s)	140, 295, 691, 799, 1156, 1243, 1500, 1768
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	886
EarI	CTCTTC	1 cut(s)	886
Ecl136II	GAGCTC	2 cut(s)	13, 1336
Eco130I	CCWWGG	3 cut(s)	896, 984, 1257
Eco147I	AGGCCT	1 cut(s)	1353
Eco24I	GRGCYC	3 cut(s)	15, 1338, 1525
Eco32I	GATATC	1 cut(s)	1490
Eco47I	GGWCC	2 cut(s)	981, 1416
Eco53kI	GAGCTC	2 cut(s)	13, 1336
Eco57I	CTGAAG	4 cut(s)	182, 606, 981, 1412
EcoICRI	GAGCTC	2 cut(s)	13, 1336
EcoNI	CCTNNNNNAGG	2 cut(s)	1101, 1554
EcoRI	GAATTC	2 cut(s)	224, 1268
EcoRII	CCWGG	3 cut(s)	228, 362, 1388
EcoRV	GATATC	1 cut(s)	1490
EcoT14I	CCWWGG	3 cut(s)	896, 984, 1257
EcoT22I	ATGCAT	1 cut(s)	1057
EcoT38I	GRGCYC	3 cut(s)	15, 1338, 1525
ErhI	CCWWGG	3 cut(s)	896, 984, 1257
Esp3I	CGTCTC	1 cut(s)	94
FaqI	GGGAC	4 cut(s)	665, 1155, 1175, 1429
FauI	CCCGC	1 cut(s)	955
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	5 cut(s)	357, 725, 1289, 1711, 1780
Fnu4HI	GCNGC	7 cut(s)	42, 45, 182, 194, 434, 599, 1386
FokI	GGATG	4 cut(s)	666, 1080, 1296, 1660
FriOI	GRGCYC	3 cut(s)	15, 1338, 1525
Fsp4HI	GCNGC	7 cut(s)	42, 45, 182, 194, 434, 599, 1386
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	4 cut(s)	347, 949, 1462, 1546
GluI	GCNGC	7 cut(s)	42, 45, 182, 194, 434, 599, 1386
GsaI	CCCAGC	1 cut(s)	1018
HaeII	RGCGCY	1 cut(s)	1464
HaeIII	GGCC	3 cut(s)	108, 901, 1353
HapII	CCGG	6 cut(s)	57, 185, 266, 371, 636, 1639
HgaI	GACGC	2 cut(s)	138, 467
HhaI	GCGC	4 cut(s)	348, 950, 1463, 1547
Hin1I	GRCGYC	1 cut(s)	478
Hin6I	GCGC	4 cut(s)	346, 948, 1461, 1545
HinP1I	GCGC	4 cut(s)	346, 948, 1461, 1545
HincII	GTYRAC	2 cut(s)	358, 793
HindII	GTYRAC	2 cut(s)	358, 793
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	6 cut(s)	115, 617, 844, 1076, 1635, 1721
HpaII	CCGG	6 cut(s)	57, 185, 266, 371, 636, 1639
HphI	GGTGA	5 cut(s)	76, 166, 554, 1016, 1037
Hpy166II	GTNNAC	9 cut(s)	291, 358, 497, 726, 793, 1290, 1712, 1752, 1781
Hpy188I	TCNGA	7 cut(s)	120, 129, 273, 567, 1171, 1435, 1681
Hpy8I	GTNNAC	9 cut(s)	291, 358, 497, 726, 793, 1290, 1712, 1752, 1781
Hpy99I	CGWCG	2 cut(s)	154, 483
HpyAV	CCTTC	6 cut(s)	335, 539, 833, 858, 1166, 1343
HpyCH4III	ACNGT	5 cut(s)	88, 259, 761, 1306, 1541
HpyCH4IV	ACGT	4 cut(s)	51, 165, 447, 1297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 1019, 1090, 1391
HpyF3I	CTNAG	7 cut(s)	93, 555, 640, 852, 909, 1089, 1284
HpySE526I	ACGT	4 cut(s)	51, 165, 447, 1297
Hsp92I	GRCGYC	1 cut(s)	478
HspAI	GCGC	4 cut(s)	346, 948, 1461, 1545
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	8 cut(s)	140, 295, 691, 799, 1156, 1243, 1500, 1768
LguI	GCTCTTC	1 cut(s)	886
LmnI	GCTCC	4 cut(s)	36, 146, 1333, 1528
Lsp1109I	GCAGC	4 cut(s)	180, 420, 610, 1372
LweI	GCATC	9 cut(s)	120, 437, 442, 959, 975, 1102, 1318, 1672, 1682
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	4 cut(s)	51, 165, 447, 1297
MaeIII	GTNAC	3 cut(s)	52, 591, 1025
MalI	GATC	8 cut(s)	142, 297, 693, 801, 1158, 1245, 1502, 1770
MboI	GATC	8 cut(s)	140, 295, 691, 799, 1156, 1243, 1500, 1768
MboII	GAAGA	9 cut(s)	227, 580, 612, 626, 873, 1166, 1253, 1797, 1800
MflI	RGATCY	1 cut(s)	1768
MhlI	GDGCHC	4 cut(s)	15, 1015, 1338, 1525
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	9 cut(s)	79, 224, 719, 954, 1036, 1211, 1268, 1400, 1404
MluNI	TGGCCA	1 cut(s)	108
MmeI	TCCRAC	2 cut(s)	143, 1280
Mox20I	TGGCCA	1 cut(s)	108
Mph1103I	ATGCAT	1 cut(s)	1057
MroXI	GAANNNNTTC	2 cut(s)	278, 843
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	3 cut(s)	1328, 1403, 1824
MslI	CAYNNNNRTG	1 cut(s)	1023
Msp20I	TGGCCA	1 cut(s)	108
MspI	CCGG	6 cut(s)	57, 185, 266, 371, 636, 1639
MspR9I	CCNGG	5 cut(s)	186, 230, 364, 372, 1390
Mva1269I	GAATGC	2 cut(s)	436, 705
MvaI	CCWGG	3 cut(s)	230, 364, 1390
MwoI	GCNNNNNNNGC	4 cut(s)	190, 1019, 1090, 1391
NciI	CCSGG	2 cut(s)	186, 372
NcoI	CCATGG	3 cut(s)	896, 984, 1257
NdeII	GATC	8 cut(s)	140, 295, 691, 799, 1156, 1243, 1500, 1768
NlaIV	GGNNCC	5 cut(s)	270, 313, 1417, 1524, 1770
NmuCI	GTSAC	1 cut(s)	1025
NsiI	ATGCAT	1 cut(s)	1057
NspI	RCATGY	1 cut(s)	1022
PaeI	GCATGC	1 cut(s)	1022
PaqCI	CACCTGC	1 cut(s)	1013
PceI	AGGCCT	1 cut(s)	1353
PciSI	GCTCTTC	1 cut(s)	886
PctI	GAATGC	2 cut(s)	436, 705
PdmI	GAANNNNTTC	2 cut(s)	278, 843
PfeI	GAWTC	6 cut(s)	115, 617, 844, 1076, 1635, 1721
PkrI	GCNGC	7 cut(s)	43, 46, 183, 195, 435, 600, 1387
PshBI	ATTAAT	1 cut(s)	1403
Psp124BI	GAGCTC	2 cut(s)	15, 1338
Psp1406I	AACGTT	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	228, 362, 1388
PspFI	CCCAGC	1 cut(s)	1014
PspGI	CCWGG	3 cut(s)	228, 362, 1388
PspN4I	GGNNCC	5 cut(s)	270, 313, 1417, 1524, 1770
PspPI	GGNCC	2 cut(s)	981, 1416
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
PsuI	RGATCY	1 cut(s)	1768
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	1023
SacI	GAGCTC	2 cut(s)	15, 1338
SalI	GTCGAC	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	886
SaqAI	TTAA	3 cut(s)	1328, 1403, 1824
SatI	GCNGC	7 cut(s)	42, 45, 182, 194, 434, 599, 1386
Sau3AI	GATC	8 cut(s)	140, 295, 691, 799, 1156, 1243, 1500, 1768
Sau96I	GGNCC	2 cut(s)	981, 1416
ScrFI	CCNGG	5 cut(s)	186, 230, 364, 372, 1390
SduI	GDGCHC	4 cut(s)	15, 1015, 1338, 1525
SfaNI	GCATC	9 cut(s)	120, 437, 442, 959, 975, 1102, 1318, 1672, 1682
SfcI	CTRYAG	2 cut(s)	258, 970
SinI	GGWCC	2 cut(s)	981, 1416
SmiMI	CAYNNNNRTG	1 cut(s)	1023
SmlI	CTYRAG	1 cut(s)	1625
SmoI	CTYRAG	1 cut(s)	1625
SphI	GCATGC	1 cut(s)	1022
Sse9I	AATT	9 cut(s)	79, 224, 719, 954, 1036, 1211, 1268, 1400, 1404
SseBI	AGGCCT	1 cut(s)	1353
SsiI	CCGC	6 cut(s)	34, 42, 45, 182, 315, 962
SspMI	CTAG	1 cut(s)	464
SstI	GAGCTC	2 cut(s)	15, 1338
StuI	AGGCCT	1 cut(s)	1353
StyD4I	CCNGG	5 cut(s)	184, 228, 362, 370, 1388
StyI	CCWWGG	3 cut(s)	896, 984, 1257
TaaI	ACNGT	5 cut(s)	88, 259, 761, 1306, 1541
TaiI	ACGT	4 cut(s)	54, 168, 450, 1300
TaqI	TCGA	7 cut(s)	15, 21, 113, 357, 663, 694, 1695
TasI	AATT	9 cut(s)	79, 224, 719, 954, 1036, 1211, 1268, 1400, 1404
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	3 cut(s)	44, 47, 184
TfiI	GAWTC	6 cut(s)	115, 617, 844, 1076, 1635, 1721
Tru1I	TTAA	3 cut(s)	1328, 1403, 1824
Tru9I	TTAA	3 cut(s)	1328, 1403, 1824
TscAI	CASTG	3 cut(s)	544, 917, 1311
TseFI	GTSAC	1 cut(s)	1025
TseI	GCWGC	4 cut(s)	193, 433, 598, 1385
Tsp45I	GTSAC	1 cut(s)	1025
TspDTI	ATGAA	4 cut(s)	668, 873, 1225, 1713
TspGWI	ACGGA	2 cut(s)	932, 1500
TspRI	CASTG	3 cut(s)	544, 917, 1311
VpaK11BI	GGWCC	2 cut(s)	981, 1416
VspI	ATTAAT	1 cut(s)	1403
XagI	CCTNNNNNAGG	2 cut(s)	1101, 1554
XapI	RAATTY	2 cut(s)	224, 1268
XceI	RCATGY	1 cut(s)	1022
XmiI	GTMKAC	5 cut(s)	357, 725, 1289, 1711, 1780
XmnI	GAANNNNTTC	2 cut(s)	278, 843
XspI	CTAG	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.