Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000174.1

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Reverse (-)

318 .. 5211

Gene Structure 4894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000174.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

atggaaaaattaccacatcctcaggatcatccggttctatacgaagctttgccggatcgagtggttggcattcttgactgggaattgtctacttttggaaaccaaatgtgtgatgttgcttactgttctttgccttacatcacagactttggggttgacaaagatcaacttggtaaaggtatggaacatactgggcttccagaagggattccttctcaggcagaatatgtggcagaatactgctcttcatctggaaagccatggccttttgctcagtggaagttttatatagcattttctttattccgtggcgcatcaatttatgcgggcatctatagtagatggaccatgggtaatgcttcaggaggtgagagtgcccagcatgcaggtgacaaagctaattttctgatagactatgcatgggcatttgttagacgagaatctgtacttcctgagcatcctccatcagggtcttttgttgctcaaaactgcttgaaaagattgggacaagagagtgaagatcaaggattttcagaagggggaggaaagtttgtccccagtaaaaggattttagaattgagaaaaaggttggtcaagttcatggaatatcacatatatcccatggaaaaagaattctacaaacttgctcagtctacctcacgttggacagtgcatccagaggaggagaagttaaaggagctcgcaaagaaagaaggtctatggaacttatttataccttttgatagtgctgccagggcaaaaaaattaatttttgatgggaccaatcaacttcagtcagatgatacctacaatcagttattgggcgctggtctttcaaaccttgaatatggatatctttgtgagatcatgggtcgttctatttgggctccacaagtgttcaactgtggcgcacctgatacaggaaatatggaggtcttgttgcgttatgggaacaaagaacaactacttgaatggcttattcctttacttgaggggagaatccggtcaggatttgcaatgacagaaccccaagttgcatcctctgatgcaactaacatcgagtgttctattagtagacaaggagattcatatattatcaatggaaaaaaatggtggacaagtggggctatggatccaagatgtagacttcttatagtcatgggaaaaaccgacttcaatgctgctatgcataaacaacagtctatgatcttagtggatatccggactctaggtgtacatataaagagagcacttacagtttttggctttgatgatgcacctcatgggcatgcagaagttttatttgacaatgtacgcgtcccagcaaagaatattctactgggagaaggacgtgggttacaccattgcatgagactgataggagctgctgagcgaggcatggagataatggctgaaagggctcttagtagaagagtttttgggaagttgattgctgaacaaggctcttttcgttctgatatagcaaagtgtcgaatagagctagagaaaaccagattgttggttctggaggcagccgaccagcttgatagacttggaaacaaaaaggcccgcggaactctagcaatggcaaaggtagcaaccccaaacatggctctgatggtgctggacatggcaatgcaagtccatggcggcgctggcttgtcttctgacacttgtctggctcatctttgggccacagcaagaacattgagaatagcagatggtccggatgaagttcacttgggtaccattgccaagttagaactacagagagctaaagctaaactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

596

Amino Acids

66.53

Weight (kDa)

6.97

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	377
Acc65I	GGTACC	1 cut(s)	1745
AccB1I	GGYRCC	1 cut(s)	1745
AccI	GTMKAC	4 cut(s)	89, 653, 1075, 1144
AccII	CGCG	2 cut(s)	1317, 1572
AccIII	TCCGGA	2 cut(s)	1221, 1726
AciI	CCGC	4 cut(s)	326, 1570, 1572, 1650
AclWI	GGATC	4 cut(s)	33, 63, 1127, 1140
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	2 cut(s)	345, 776
AfaI	GTAC	4 cut(s)	447, 1236, 1314, 1747
AfiI	CCNNNNNNNGG	5 cut(s)	467, 564, 663, 920, 1609
AflIII	ACRYGT	1 cut(s)	1315
AgsI	TTSAA	6 cut(s)	496, 837, 845, 901, 971, 1177
AjiI	CACGTC	1 cut(s)	1352
AjnI	CCWGG	1 cut(s)	752
AluBI	AGCT	8 cut(s)	47, 398, 700, 1385, 1501, 1543, 1775, 1781
AluI	AGCT	8 cut(s)	47, 398, 700, 1385, 1501, 1543, 1775, 1781
Alw21I	GWGCWC	2 cut(s)	702, 1252
Alw26I	GTCTC	1 cut(s)	1366
AlwI	GGATC	4 cut(s)	33, 63, 1127, 1140
Aor13HI	TCCGGA	2 cut(s)	1221, 1726
AoxI	GGCC	3 cut(s)	263, 1566, 1692
ApeKI	GCWGC	4 cut(s)	749, 1181, 1385, 1532
ApoI	RAATTY	1 cut(s)	632
AseI	ATTAAT	1 cut(s)	767
Asp700I	GAANNNNTTC	1 cut(s)	207
Asp718I	GGTACC	1 cut(s)	1745
AspLEI	GCGC	4 cut(s)	314, 827, 911, 1655
AspS9I	GGNCC	5 cut(s)	345, 780, 1567, 1692, 1724
AsuHPI	GGTGA	2 cut(s)	380, 401
AvaII	GGWCC	3 cut(s)	345, 780, 1724
AxyI	CCTNAGG	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	379
BaeI	ACNNNNGTAYC	2 cut(s)	1729, 1762
BamHI	GGATCC	1 cut(s)	1132
BanI	GGYRCC	1 cut(s)	1745
BanII	GRGCYC	3 cut(s)	702, 889, 1423
BbsI	GAAGAC	1 cut(s)	1656
Bbv12I	GWGCWC	2 cut(s)	702, 1252
BbvI	GCAGC	4 cut(s)	736, 1168, 1372, 1544
BccI	CCATC	5 cut(s)	336, 472, 770, 1612, 1715
BcgI	CGANNNNNNTGC	2 cut(s)	1160, 1194
BciT130I	CCWGG	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	1366
BfaI	CTAG	3 cut(s)	1229, 1502, 1580
BfmI	CTRYAG	2 cut(s)	334, 1766
BfoI	RGCGCY	2 cut(s)	828, 1656
BfuAI	ACCTGC	1 cut(s)	377
BisI	GCNGC	5 cut(s)	750, 1182, 1386, 1533, 1651
BlpI	GCTNAGC	1 cut(s)	1389
BlsI	GCNGC	5 cut(s)	751, 1183, 1387, 1534, 1652
Bme1390I	CCNGG	1 cut(s)	754
Bme18I	GGWCC	3 cut(s)	345, 780, 1724
BmgBI	CACGTC	1 cut(s)	1352
BmgT120I	GGNCC	5 cut(s)	345, 780, 1567, 1692, 1724
BmiI	GGNNCC	4 cut(s)	781, 888, 1134, 1747
BmrFI	CCNGG	1 cut(s)	754
BmrI	ACTGGG	4 cut(s)	88, 201, 552, 1349
BmsI	GCATC	7 cut(s)	323, 339, 466, 682, 1036, 1046, 1264
BmuI	ACTGGG	4 cut(s)	88, 201, 552, 1349
BoxI	GACNNNNGTC	1 cut(s)	1674
BpiI	GAAGAC	1 cut(s)	1656
BpmI	CTGGAG	1 cut(s)	1547
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	1389
BpuEI	CTTGAG	1 cut(s)	1010
BsaJI	CCNNGG	7 cut(s)	260, 307, 348, 621, 753, 1570, 1645
BsaWI	WCCGGW	4 cut(s)	31, 1002, 1221, 1726
BsaXI	ACNNNNNCTCC	4 cut(s)	674, 704, 923, 953
Bsc4I	CCNNNNNNNGG	5 cut(s)	467, 564, 663, 920, 1609
Bse1I	ACTGG	4 cut(s)	83, 196, 558, 1344
Bse21I	CCTNAGG	1 cut(s)	21
Bse3DI	GCAATG	5 cut(s)	1023, 1363, 1590, 1641, 1749
BseAI	TCCGGA	2 cut(s)	1221, 1726
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	7 cut(s)	260, 307, 348, 621, 753, 1570, 1645
BseGI	GGATG	6 cut(s)	16, 28, 457, 673, 1037, 1735
BseLI	CCNNNNNNNGG	5 cut(s)	467, 564, 663, 920, 1609
BseMI	GCAATG	5 cut(s)	1023, 1363, 1590, 1641, 1749
BseMII	CTCAG	6 cut(s)	35, 230, 287, 444, 662, 1380
BseNI	ACTGG	4 cut(s)	83, 196, 558, 1344
BseRI	GAGGAG	2 cut(s)	695, 698
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	4 cut(s)	736, 1168, 1372, 1544
BseYI	CCCAGC	2 cut(s)	378, 1321
Bsh1236I	CGCG	2 cut(s)	1317, 1572
BshFI	GGCC	3 cut(s)	265, 1568, 1694
BshNI	GGYRCC	1 cut(s)	1745
BsiHKAI	GWGCWC	2 cut(s)	702, 1252
BsiSI	CCGG	5 cut(s)	32, 53, 1003, 1222, 1727
BslFI	GGGAC	4 cut(s)	519, 539, 793, 1304
BslI	CCNNNNNNNGG	5 cut(s)	467, 564, 663, 920, 1609
BsmAI	GTCTC	1 cut(s)	1366
BsmFI	GGGAC	4 cut(s)	519, 539, 793, 1304
BsmI	GAATGC	1 cut(s)	69
BsnI	GGCC	3 cut(s)	265, 1568, 1694
Bsp1286I	GDGCHC	5 cut(s)	379, 702, 889, 1252, 1423
Bsp13I	TCCGGA	2 cut(s)	1221, 1726
Bsp1407I	TGTACA	1 cut(s)	1234
Bsp143I	GATC	7 cut(s)	25, 55, 163, 520, 864, 1132, 1206
Bsp1720I	GCTNAGC	1 cut(s)	1389
Bsp19I	CCATGG	4 cut(s)	260, 348, 621, 1645
BspACI	CCGC	4 cut(s)	326, 1570, 1572, 1650
BspANI	GGCC	3 cut(s)	265, 1568, 1694
BspCNI	CTCAG	6 cut(s)	34, 229, 286, 445, 661, 1381
BspEI	TCCGGA	2 cut(s)	1221, 1726
BspFNI	CGCG	2 cut(s)	1317, 1572
BspLI	GGNNCC	4 cut(s)	781, 888, 1134, 1747
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	4 cut(s)	33, 63, 1127, 1140
BspQI	GCTCTTC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	1745
BsrDI	GCAATG	5 cut(s)	1023, 1363, 1590, 1641, 1749
BsrGI	TGTACA	1 cut(s)	1234
BsrI	ACTGG	4 cut(s)	83, 196, 558, 1344
BssECI	CCNNGG	7 cut(s)	260, 307, 348, 621, 753, 1570, 1645
BssMI	GATC	7 cut(s)	25, 55, 163, 520, 864, 1132, 1206
BssT1I	CCWWGG	4 cut(s)	260, 348, 621, 1645
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	5 cut(s)	125, 670, 905, 1200, 1258
Bst6I	CTCTTC	2 cut(s)	250, 1426
BstAUI	TGTACA	1 cut(s)	1234
BstC8I	GCNNGC	6 cut(s)	328, 384, 702, 1290, 1570, 1657
BstDEI	CTNAG	8 cut(s)	21, 216, 273, 453, 648, 1210, 1389, 1424
BstDSI	CCRYGG	6 cut(s)	260, 307, 348, 621, 1570, 1645
BstENI	CCTNNNNNAGG	2 cut(s)	465, 918
BstF5I	GGATG	6 cut(s)	16, 28, 457, 673, 1037, 1735
BstFNI	CGCG	2 cut(s)	1317, 1572
BstH2I	RGCGCY	2 cut(s)	828, 1656
BstHHI	GCGC	4 cut(s)	314, 827, 911, 1655
BstKTI	GATC	7 cut(s)	28, 58, 166, 523, 867, 1135, 1209
BstMAI	GTCTC	1 cut(s)	1366
BstMBI	GATC	7 cut(s)	25, 55, 163, 520, 864, 1132, 1206
BstMWI	GCNNNNNNNGC	5 cut(s)	383, 755, 1418, 1595, 1656
BstNI	CCWGG	1 cut(s)	754
BstNSI	RCATGY	2 cut(s)	386, 1292
BstPAI	GACNNNNGTC	1 cut(s)	1674
BstSCI	CCNGG	1 cut(s)	752
BstSFI	CTRYAG	2 cut(s)	334, 1766
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	2 cut(s)	1317, 1572
BstV1I	GCAGC	4 cut(s)	736, 1168, 1372, 1544
BstV2I	GAAGAC	1 cut(s)	1656
BstX2I	RGATCY	1 cut(s)	1132
BstXI	CCANNNNNNTGG	1 cut(s)	1519
BstYI	RGATCY	1 cut(s)	1132
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	265, 1568, 1694
BtgI	CCRYGG	6 cut(s)	260, 307, 348, 621, 1570, 1645
BtrI	CACGTC	1 cut(s)	1352
BtsCI	GGATG	6 cut(s)	16, 28, 457, 673, 1037, 1735
BtsIMutI	CAGTG	2 cut(s)	281, 675
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	6 cut(s)	328, 384, 702, 1290, 1570, 1657
CfoI	GCGC	4 cut(s)	314, 827, 911, 1655
Cfr13I	GGNCC	5 cut(s)	345, 780, 1567, 1692, 1724
Cfr42I	CCGCGG	1 cut(s)	1573
CseI	GACGC	1 cut(s)	1306
Csp6I	GTAC	4 cut(s)	446, 1235, 1313, 1746
CviQI	GTAC	4 cut(s)	446, 1235, 1313, 1746
DdeI	CTNAG	8 cut(s)	21, 216, 273, 453, 648, 1210, 1389, 1424
DpnI	GATC	7 cut(s)	27, 57, 165, 522, 866, 1134, 1208
DpnII	GATC	7 cut(s)	25, 55, 163, 520, 864, 1132, 1206
Eam1104I	CTCTTC	2 cut(s)	250, 1426
EarI	CTCTTC	2 cut(s)	250, 1426
Ecl136II	GAGCTC	1 cut(s)	700
Eco130I	CCWWGG	4 cut(s)	260, 348, 621, 1645
Eco24I	GRGCYC	3 cut(s)	702, 889, 1423
Eco32I	GATATC	2 cut(s)	854, 1219
Eco47I	GGWCC	3 cut(s)	345, 780, 1724
Eco53kI	GAGCTC	1 cut(s)	700
Eco57I	CTGAAG	2 cut(s)	345, 776
Eco81I	CCTNAGG	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	700
EcoNI	CCTNNNNNAGG	2 cut(s)	465, 918
EcoRI	GAATTC	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	752
EcoRV	GATATC	2 cut(s)	854, 1219
EcoT14I	CCWWGG	4 cut(s)	260, 348, 621, 1645
EcoT22I	ATGCAT	2 cut(s)	421, 1191
EcoT38I	GRGCYC	3 cut(s)	702, 889, 1423
ErhI	CCWWGG	4 cut(s)	260, 348, 621, 1645
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	4 cut(s)	519, 539, 793, 1304
FauI	CCCGC	2 cut(s)	319, 1577
FblI	GTMKAC	4 cut(s)	89, 653, 1075, 1144
Fnu4HI	GCNGC	5 cut(s)	750, 1182, 1386, 1533, 1651
FokI	GGATG	6 cut(s)	3, 15, 444, 660, 1024, 1742
FriOI	GRGCYC	3 cut(s)	702, 889, 1423
Fsp4HI	GCNGC	5 cut(s)	750, 1182, 1386, 1533, 1651
FspBI	CTAG	3 cut(s)	1229, 1502, 1580
GlaI	GCGC	4 cut(s)	313, 826, 910, 1654
GluI	GCNGC	5 cut(s)	750, 1182, 1386, 1533, 1651
GsaI	CCCAGC	2 cut(s)	382, 1325
GsuI	CTGGAG	1 cut(s)	1547
HaeII	RGCGCY	2 cut(s)	828, 1656
HaeIII	GGCC	3 cut(s)	265, 1568, 1694
HapII	CCGG	5 cut(s)	32, 53, 1003, 1222, 1727
HgaI	GACGC	1 cut(s)	1306
HhaI	GCGC	4 cut(s)	314, 827, 911, 1655
Hin6I	GCGC	4 cut(s)	312, 825, 909, 1653
HinP1I	GCGC	4 cut(s)	312, 825, 909, 1653
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	5 cut(s)	208, 440, 999, 1085, 1225
HpaII	CCGG	5 cut(s)	32, 53, 1003, 1222, 1727
HphI	GGTGA	2 cut(s)	380, 401
Hpy166II	GTNNAC	8 cut(s)	90, 157, 654, 1076, 1116, 1145, 1235, 1738
Hpy188I	TCNGA	8 cut(s)	408, 535, 799, 1045, 1477, 1617, 1669, 1790
Hpy8I	GTNNAC	8 cut(s)	90, 157, 654, 1076, 1116, 1145, 1235, 1738
HpyAV	CCTTC	5 cut(s)	197, 222, 530, 707, 1340
HpyCH4III	ACNGT	5 cut(s)	125, 670, 905, 1200, 1258
HpyCH4IV	ACGT	2 cut(s)	661, 1351
HpyF10VI	GCNNNNNNNGC	5 cut(s)	383, 755, 1418, 1595, 1656
HpyF3I	CTNAG	8 cut(s)	21, 216, 273, 453, 648, 1210, 1389, 1424
HpySE526I	ACGT	2 cut(s)	661, 1351
HspAI	GCGC	4 cut(s)	312, 825, 909, 1653
Kpn2I	TCCGGA	2 cut(s)	1221, 1726
KpnI	GGTACC	1 cut(s)	1749
KspI	CCGCGG	1 cut(s)	1573
Kzo9I	GATC	7 cut(s)	25, 55, 163, 520, 864, 1132, 1206
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	3 cut(s)	697, 892, 1382
Lsp1109I	GCAGC	4 cut(s)	736, 1168, 1372, 1544
LweI	GCATC	7 cut(s)	323, 339, 466, 682, 1036, 1046, 1264
MaeI	CTAG	3 cut(s)	1229, 1502, 1580
MaeII	ACGT	2 cut(s)	661, 1351
MaeIII	GTNAC	2 cut(s)	389, 1356
MalI	GATC	7 cut(s)	27, 57, 165, 522, 866, 1134, 1208
MboI	GATC	7 cut(s)	25, 55, 163, 520, 864, 1132, 1206
MboII	GAAGA	4 cut(s)	237, 530, 1443, 1656
MflI	RGATCY	1 cut(s)	1132
MhlI	GDGCHC	5 cut(s)	379, 702, 889, 1252, 1423
MluCI	AATT	8 cut(s)	8, 83, 318, 400, 575, 632, 764, 768
MluI	ACGCGT	1 cut(s)	1315
MlyI	GAGTC	1 cut(s)	1219
MmeI	TCCRAC	1 cut(s)	644
Mph1103I	ATGCAT	2 cut(s)	421, 1191
MroI	TCCGGA	2 cut(s)	1221, 1726
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	2 cut(s)	692, 767
MslI	CAYNNNNRTG	3 cut(s)	387, 1287, 1634
MspA1I	CMGCKG	1 cut(s)	1572
MspI	CCGG	5 cut(s)	32, 53, 1003, 1222, 1727
MspR9I	CCNGG	1 cut(s)	754
Mva1269I	GAATGC	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	754
MvnI	CGCG	2 cut(s)	1317, 1572
MwoI	GCNNNNNNNGC	5 cut(s)	383, 755, 1418, 1595, 1656
NcoI	CCATGG	4 cut(s)	260, 348, 621, 1645
NdeII	GATC	7 cut(s)	25, 55, 163, 520, 864, 1132, 1206
NlaIV	GGNNCC	4 cut(s)	781, 888, 1134, 1747
NmuCI	GTSAC	1 cut(s)	389
NsiI	ATGCAT	2 cut(s)	421, 1191
NspI	RCATGY	2 cut(s)	386, 1292
PaeI	GCATGC	2 cut(s)	386, 1292
PaqCI	CACCTGC	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	250
PctI	GAATGC	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	4 cut(s)	208, 440, 999, 1085
PkrI	GCNGC	5 cut(s)	751, 1183, 1387, 1534, 1652
PleI	GAGTC	1 cut(s)	1219
PpsI	GAGTC	1 cut(s)	1219
PshAI	GACNNNNGTC	1 cut(s)	1674
PshBI	ATTAAT	1 cut(s)	767
Psp124BI	GAGCTC	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	752
PspFI	CCCAGC	2 cut(s)	378, 1321
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	4 cut(s)	781, 888, 1134, 1747
PspPI	GGNCC	5 cut(s)	345, 780, 1567, 1692, 1724
PsuI	RGATCY	1 cut(s)	1132
RsaI	GTAC	4 cut(s)	447, 1236, 1314, 1747
RsaNI	GTAC	4 cut(s)	446, 1235, 1313, 1746
RseI	CAYNNNNRTG	3 cut(s)	387, 1287, 1634
SacI	GAGCTC	1 cut(s)	702
SacII	CCGCGG	1 cut(s)	1573
SapI	GCTCTTC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	692, 767
SatI	GCNGC	5 cut(s)	750, 1182, 1386, 1533, 1651
Sau3AI	GATC	7 cut(s)	25, 55, 163, 520, 864, 1132, 1206
Sau96I	GGNCC	5 cut(s)	345, 780, 1567, 1692, 1724
SchI	GAGTC	1 cut(s)	1219
ScrFI	CCNGG	1 cut(s)	754
SduI	GDGCHC	5 cut(s)	379, 702, 889, 1252, 1423
SfaNI	GCATC	7 cut(s)	323, 339, 466, 682, 1036, 1046, 1264
SfcI	CTRYAG	2 cut(s)	334, 1766
Sfr303I	CCGCGG	1 cut(s)	1573
SgrBI	CCGCGG	1 cut(s)	1573
SinI	GGWCC	3 cut(s)	345, 780, 1724
SmiMI	CAYNNNNRTG	3 cut(s)	387, 1287, 1634
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
SphI	GCATGC	2 cut(s)	386, 1292
Sse9I	AATT	8 cut(s)	8, 83, 318, 400, 575, 632, 764, 768
SsiI	CCGC	4 cut(s)	326, 1570, 1572, 1650
SspI	AATATT	1 cut(s)	1333
SspMI	CTAG	3 cut(s)	1229, 1502, 1580
SstI	GAGCTC	1 cut(s)	702
StyD4I	CCNGG	1 cut(s)	752
StyI	CCWWGG	4 cut(s)	260, 348, 621, 1645
TaaI	ACNGT	5 cut(s)	125, 670, 905, 1200, 1258
TaiI	ACGT	2 cut(s)	664, 1354
TaqI	TCGA	3 cut(s)	58, 1059, 1492
TasI	AATT	8 cut(s)	8, 83, 318, 400, 575, 632, 764, 768
TatI	WGTACW	2 cut(s)	445, 1234
TauI	GCSGC	1 cut(s)	1653
TfiI	GAWTC	4 cut(s)	208, 440, 999, 1085
Tru1I	TTAA	2 cut(s)	692, 767
Tru9I	TTAA	2 cut(s)	692, 767
TscAI	CASTG	2 cut(s)	281, 675
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	4 cut(s)	749, 1181, 1385, 1532
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	4 cut(s)	237, 589, 1077, 1746
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	2 cut(s)	281, 675
VpaK11BI	GGWCC	3 cut(s)	345, 780, 1724
VspI	ATTAAT	1 cut(s)	767
XagI	CCTNNNNNAGG	2 cut(s)	465, 918
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	2 cut(s)	386, 1292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1652
XmiI	GTMKAC	4 cut(s)	89, 653, 1075, 1144
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	3 cut(s)	1229, 1502, 1580
Zsp2I	ATGCAT	2 cut(s)	421, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.