Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003000

Physical Location & Seq

Genomic Coordinates Forward (+)

1677371 .. 1677865

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGAAGAAAACGATCTCAAATGGCTCATCAAATCTCTCTGCAGAAACCCATCATCCAAAACACTCCAGTTCTACCAAAGATGCAAGAATATGGTGAGCAGATCTTAAAGAAAAATGACAGTTTTATGGAGCTGCAAGGAAGCACGTCACGAAAGATGCATGAAAACGAGGAAGTTTCAGTAATGGACGGTCATGCTTCAGCTGCTGCAGAAGGTGATGATCATGTTGTTGTTGTGGATCAAGATCCCACGGCGGCGGCGGCGGAAGAGGAAGAGAGTGGACGTGAGAGGTTGAAGAAGCACAGAATGGAGGTGGCCGGACAGGTTTGGATTCCGGATATTTGGGGGCAGGAGGAGTTGCTGCAGGATTGGATTGACTGTTCAGCTTTTGATGCTTCTTTGTTTCCGAGCGGGATTATGACTGCTCGTTCTGCGTTGGTTGAGGAGGGGAGGAGAGAAAACACCGGCAGATTAAGAATAGAATACAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.65

Weight (kDa)

5.18

Isoelectric Point (pI)

61.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52740
fragaria_vesca	FvH4_3g24891 FvH4_6g18630
malus_domestica	MD00G1073200.v1.1 MD03G1143800.v1.1 MD12G1035800.v1.1 MD14G1022500.v1.1
prunus_persica	Prupe.6G129600_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1 Prupe.7G110700_v2.0.a1
pyrus_communis	pycom03g09930 pycom11g13630 pycom12g02360 pycom14g02150
rosa_chinensis	RchiOBHm_Chr3g0473581 RchiOBHm_Chr5g0044531
rosa_laevigata	RLG00000024003 RLG00000034280
rosa_multiflora	Rmu_co8422003.1_g000001 Rmu_sc0003069.1_g000014 Rmu_sc0017599.1_g000001 Rmu_sc0033628.1_g000003 Rmu_ssc0000151.1_g000027
rosa_roxburghii	Rroxscaffold_1G00036480 Rroxscaffold_6G00408050
rosa_rugosa	Rorug03G0133000 Rorug05G0215100
rosa_samantha	Rh3AG184800 Rh3BG212800 Rh3CG209300 Rh3DG208600 Rh5AG299200 Rh5BG306700 Rh5CG333400 Rh5DG316100
rosa_wichuraiana	Rw3G015970 Rw5G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	411
AccIII	TCCGGA	1 cut(s)	334
AciI	CCGC	5 cut(s)	254, 257, 260, 263, 411
AclWI	GGATC	2 cut(s)	239, 246
AcoI	YGGCCR	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	295
AjiI	CACGTC	2 cut(s)	147, 284
AloI	GAACNNNNNNTCC	2 cut(s)	364, 396
AluBI	AGCT	3 cut(s)	133, 203, 386
AluI	AGCT	3 cut(s)	133, 203, 386
AlwI	GGATC	2 cut(s)	239, 246
AlwNI	CAGNNNCTG	1 cut(s)	206
Aor13HI	TCCGGA	1 cut(s)	334
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	4 cut(s)	133, 203, 206, 361
AsuHPI	GGTGA	2 cut(s)	107, 227
BbvI	GCAGC	4 cut(s)	120, 190, 193, 348
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	267
BclI	TGATCA	1 cut(s)	220
BfmI	CTRYAG	3 cut(s)	41, 207, 362
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	7 cut(s)	134, 204, 207, 255, 258, 261, 362
BlsI	GCNGC	7 cut(s)	135, 205, 208, 256, 259, 262, 363
BmgBI	CACGTC	2 cut(s)	147, 284
BmsI	GCATC	3 cut(s)	72, 147, 382
BpmI	CTGGAG	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	54
BseJI	GATNNNNATC	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	3 cut(s)	368, 458, 466
BseXI	GCAGC	4 cut(s)	120, 190, 193, 348
BshFI	GGCC	1 cut(s)	317
BsiSI	CCGG	3 cut(s)	318, 335, 465
BsnI	GGCC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	334
Bsp143I	GATC	5 cut(s)	14, 102, 220, 238, 244
BspACI	CCGC	5 cut(s)	254, 257, 260, 263, 411
BspANI	GGCC	1 cut(s)	317
BspEI	TCCGGA	1 cut(s)	334
BspMAI	CTGCAG	3 cut(s)	45, 211, 366
BspPI	GGATC	2 cut(s)	239, 246
BsrBI	CCGCTC	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	5 cut(s)	14, 102, 220, 238, 244
Bst4CI	ACNGT	3 cut(s)	122, 191, 380
Bst6I	CTCTTC	2 cut(s)	261, 267
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	5 cut(s)	17, 105, 223, 241, 247
BstMBI	GATC	5 cut(s)	14, 102, 220, 238, 244
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 260, 392, 431
BstSFI	CTRYAG	3 cut(s)	41, 207, 362
BstV1I	GCAGC	4 cut(s)	120, 190, 193, 348
BstX2I	RGATCY	2 cut(s)	102, 244
BstYI	RGATCY	2 cut(s)	102, 244
BsuRI	GGCC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	249
BtrI	CACGTC	2 cut(s)	147, 284
BtsCI	GGATG	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	464
CviAII	CATG	3 cut(s)	161, 194, 224
CviJI	RGCY	5 cut(s)	26, 133, 203, 317, 386
CviKI_1	RGCY	5 cut(s)	26, 133, 203, 317, 386
DpnI	GATC	5 cut(s)	16, 104, 222, 240, 246
DpnII	GATC	5 cut(s)	14, 102, 220, 238, 244
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	261, 267
EarI	CTCTTC	2 cut(s)	261, 267
EciI	GGCGGA	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	162
FaeI	CATG	3 cut(s)	164, 197, 227
FaiI	YATR	6 cut(s)	93, 128, 162, 195, 225, 419
FatI	CATG	3 cut(s)	160, 193, 223
FauI	CCCGC	1 cut(s)	404
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	7 cut(s)	134, 204, 207, 255, 258, 261, 362
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	7 cut(s)	134, 204, 207, 255, 258, 261, 362
GluI	GCNGC	7 cut(s)	134, 204, 207, 255, 258, 261, 362
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	3 cut(s)	318, 335, 465
Hin1II	CATG	3 cut(s)	164, 197, 227
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	3 cut(s)	318, 335, 465
HphI	GGTGA	2 cut(s)	107, 227
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	150, 242, 335
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	3 cut(s)	122, 191, 380
HpyCH4IV	ACGT	2 cut(s)	146, 283
HpyCH4V	TGCA	6 cut(s)	43, 85, 136, 160, 209, 364
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 260, 392, 431
HpySE526I	ACGT	2 cut(s)	146, 283
Hsp92II	CATG	3 cut(s)	164, 197, 227
Kpn2I	TCCGGA	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	5 cut(s)	14, 102, 220, 238, 244
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	8 cut(s)	81, 308, 331, 335, 348, 350, 472, 478
Lsp1109I	GCAGC	4 cut(s)	120, 190, 193, 348
LweI	GCATC	3 cut(s)	72, 147, 382
MaeII	ACGT	2 cut(s)	146, 283
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	5 cut(s)	16, 104, 222, 240, 246
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	5 cut(s)	14, 102, 220, 238, 244
MboII	GAAGA	4 cut(s)	18, 278, 284, 307
MflI	RGATCY	2 cut(s)	102, 244
MnlI	CCTC	8 cut(s)	163, 262, 282, 304, 346, 436, 439, 444
Mph1103I	ATGCAT	1 cut(s)	162
MroI	TCCGGA	1 cut(s)	334
MseI	TTAA	2 cut(s)	107, 473
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	3 cut(s)	318, 335, 465
MwoI	GCNNNNNNNGC	4 cut(s)	203, 260, 392, 431
NdeII	GATC	5 cut(s)	14, 102, 220, 238, 244
NlaIII	CATG	3 cut(s)	164, 197, 227
NmuCI	GTSAC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	7 cut(s)	135, 205, 208, 256, 259, 262, 363
PstI	CTGCAG	3 cut(s)	45, 211, 366
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	102, 244
PvuII	CAGCTG	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	107, 473
SatI	GCNGC	7 cut(s)	134, 204, 207, 255, 258, 261, 362
Sau3AI	GATC	5 cut(s)	14, 102, 220, 238, 244
SfaNI	GCATC	3 cut(s)	72, 147, 382
SfcI	CTRYAG	3 cut(s)	41, 207, 362
SsiI	CCGC	5 cut(s)	254, 257, 260, 263, 411
TaaI	ACNGT	3 cut(s)	122, 191, 380
TaiI	ACGT	2 cut(s)	149, 286
TauI	GCSGC	3 cut(s)	257, 260, 263
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	2 cut(s)	107, 473
Tru9I	TTAA	2 cut(s)	107, 473
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	4 cut(s)	133, 203, 206, 361
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.