Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

4554560 .. 4556569

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGAATGAGAAGAAGATAGATTGCCAAGAAAGAAATCAACAAAGCCATGGATTAATCAGTGAGTGCAATTTTGAAGTTGGTAATCAGTCATATCAAATTTTTGGTGAGCAGCAACAACAGGCTTGGAACAACATGGGAATTTGGGTTCAGCAACCCACCATGGATCATGGAGTGTCACTGCTTCAAAATCTTGGGCCTCCTAAATCTCCCAGCAGTATTACAAGCCGCCTCGAATCCCCGGCTTCTGCTTTTTATGCAACTGAACGCTGTATGGGAGGGTTTCCACAGTATGACTCTCAAGTTGGTAATAATCCTCATTTCCCTTCAGGTCAATCTTATAATGAAAGCTACAGCTCCATGAATTCATCCGAGCAAACTGATCTGGATTTCGACATCAGAAACACTTTGCAGTCGATTGTGAAAACTCAACCCCGCAGCTATCAATACCATAAATCCTCAGAGAAGTTTAACCAAATCCCAGGAAGCGATTTGTCAGGCTGTAAGCTCTTTGCACATCAATCAAATAAGTTGCATGGAGATCATAAAACTACTACAATTAGAAGACCGTCCTTATCCCTTCCTTCTAAAGAAAATCAGGATCAAGTAGGCTGTTATACTTCATTCAATACTTCCCCGGTAACTCAACCGAGCTTCTTTTCTCAACAAGGAAAGCAGTCGCCAAGATATTCCTCCGGAAATGTTTCCGCTGCATATGGTAATTCCCCTTCAACTAGCCCTGTACTCTCCAGTAAAACACGAATTCGATGGAATCAAGATCTTCACGAAATGTTCGTTGAGTGTGTAAATCGTCTTGGGGGTGCTGAAAAAGCAACACCGAAGGCAATACTGAAGATGATGTGTTTGGATGGATTAACCATCTTTCATGTTAAAAGTCATCTGCAGAAATATCGAATTGCGAAATATCTACCATACCCTGCGGAAGGAAAATCTGAGAAAAGAACTACTTTGAATTTTGAACCCCATCTAGTTGTGAAAACTGGCTTGCAAATCAAAGAGGCGCTCCAACTGCAATTAGATGTTCAGCGGCGTCTTCACGAACAGTTGGAGATTCAACGAAAGTTGCAGCTGCGAATTGAAGAACAAGGAAAGCAGCTCAAGGAGATGTTTGATCTGCAACAACAAGCAAGTAGTAGCCTGTTGAAGACTCAGAACGTGGACGTCACATGCCACGAAGCTGGCCCATCAAATAGTCTCGACGATACTGATCAGGTTTCAACTTCTGAAGGTTCTGCGAATACTAGTTTTCACTCCAAGATAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

428

Amino Acids

48.02

Weight (kDa)

8.04

Isoelectric Point (pI)

62.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	255 - 304	2.1e-06	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	335 - 381	1.8e-18	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AatII	GACGTC	1 cut(s)	1182
AccIII	TCCGGA	1 cut(s)	692
AciI	CCGC	5 cut(s)	226, 433, 705, 938, 1045
AclWI	GGATC	2 cut(s)	171, 606
AcsI	RAATTY	5 cut(s)	96, 138, 361, 759, 970
AcuI	CTGAAG	3 cut(s)	309, 869, 1263
AcyI	GRCGYC	2 cut(s)	1048, 1179
AfaI	GTAC	1 cut(s)	741
AfiI	CCNNNNNNNGG	1 cut(s)	941
AhlI	ACTAGT	1 cut(s)	1259
AjnI	CCWGG	1 cut(s)	478
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
AluBI	AGCT	8 cut(s)	348, 354, 438, 505, 651, 1087, 1114, 1196
AluI	AGCT	8 cut(s)	348, 354, 438, 505, 651, 1087, 1114, 1196
Alw26I	GTCTC	1 cut(s)	1217
AlwI	GGATC	2 cut(s)	171, 606
Aor13HI	TCCGGA	1 cut(s)	692
AoxI	GGCC	2 cut(s)	194, 1198
ApeKI	GCWGC	6 cut(s)	109, 435, 707, 1084, 1087, 1111
ApoI	RAATTY	5 cut(s)	96, 138, 361, 759, 970
AseI	ATTAAT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	1021
AspS9I	GGNCC	2 cut(s)	194, 1199
AsuC2I	CCSGG	2 cut(s)	239, 635
AsuHPI	GGTGA	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	709, 741
BbsI	GAAGAC	3 cut(s)	568, 1043, 1169
BbvI	GCAGC	6 cut(s)	121, 447, 694, 1074, 1096, 1123
BccI	CCATC	5 cut(s)	759, 860, 884, 990, 1210
BcgI	CGANNNNNNTGC	2 cut(s)	890, 924
BciT130I	CCWGG	1 cut(s)	480
BclI	TGATCA	1 cut(s)	1225
BcnI	CCSGG	2 cut(s)	239, 635
BcoDI	GTCTC	1 cut(s)	1217
BcuI	ACTAGT	1 cut(s)	1259
BfaI	CTAG	3 cut(s)	732, 986, 1260
BfmI	CTRYAG	2 cut(s)	349, 899
BfoI	RGCGCY	1 cut(s)	1022
BglII	AGATCT	1 cut(s)	775
BisI	GCNGC	8 cut(s)	110, 226, 436, 708, 1046, 1085, 1088, 1112
BlsI	GCNGC	8 cut(s)	111, 227, 437, 709, 1047, 1086, 1089, 1113
Bme1390I	CCNGG	3 cut(s)	239, 480, 635
BmgT120I	GGNCC	2 cut(s)	194, 1199
BmrFI	CCNGG	3 cut(s)	239, 480, 635
BpiI	GAAGAC	3 cut(s)	568, 1043, 1169
BpmI	CTGGAG	1 cut(s)	730
BpuEI	CTTGAG	2 cut(s)	282, 1100
BpuMI	CCSGG	2 cut(s)	239, 635
BsaBI	GATNNNNATC	1 cut(s)	1224
BsaHI	GRCGYC	2 cut(s)	1048, 1179
BsaJI	CCNNGG	5 cut(s)	46, 159, 237, 478, 633
BsaWI	WCCGGW	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	1 cut(s)	941
Bse1I	ACTGG	2 cut(s)	747, 1003
Bse8I	GATNNNNATC	1 cut(s)	1224
BseAI	TCCGGA	1 cut(s)	692
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	5 cut(s)	46, 159, 237, 478, 633
BseGI	GGATG	2 cut(s)	365, 871
BseJI	GATNNNNATC	1 cut(s)	1224
BseLI	CCNNNNNNNGG	1 cut(s)	941
BseMII	CTCAG	3 cut(s)	471, 942, 1181
BseNI	ACTGG	2 cut(s)	747, 1003
BseXI	GCAGC	6 cut(s)	121, 447, 694, 1074, 1096, 1123
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	2 cut(s)	196, 1200
BsiSI	CCGG	3 cut(s)	239, 635, 693
BslI	CCNNNNNNNGG	1 cut(s)	941
BsmAI	GTCTC	1 cut(s)	1217
BsnI	GGCC	2 cut(s)	196, 1200
Bsp13I	TCCGGA	1 cut(s)	692
Bsp143I	GATC	7 cut(s)	163, 379, 538, 598, 775, 1129, 1225
Bsp19I	CCATGG	2 cut(s)	46, 159
BspACI	CCGC	5 cut(s)	226, 433, 705, 938, 1045
BspANI	GGCC	2 cut(s)	196, 1200
BspCNI	CTCAG	3 cut(s)	470, 943, 1180
BspEI	TCCGGA	1 cut(s)	692
BspMAI	CTGCAG	1 cut(s)	903
BspPI	GGATC	2 cut(s)	171, 606
BsrI	ACTGG	2 cut(s)	747, 1003
BssECI	CCNNGG	5 cut(s)	46, 159, 237, 478, 633
BssMI	GATC	7 cut(s)	163, 379, 538, 598, 775, 1129, 1225
BssNI	GRCGYC	2 cut(s)	1048, 1179
BssT1I	CCWWGG	2 cut(s)	46, 159
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	288, 567, 1062
BstACI	GRCGYC	2 cut(s)	1048, 1179
BstC8I	GCNNGC	2 cut(s)	1004, 1198
BstDEI	CTNAG	3 cut(s)	457, 951, 1167
BstDSI	CCRYGG	2 cut(s)	46, 159
BstENI	CCTNNNNNAGG	1 cut(s)	939
BstF5I	GGATG	2 cut(s)	365, 871
BstH2I	RGCGCY	1 cut(s)	1022
BstHHI	GCGC	1 cut(s)	1021
BstKTI	GATC	7 cut(s)	166, 382, 541, 601, 778, 1132, 1228
BstMAI	GTCTC	1 cut(s)	1217
BstMBI	GATC	7 cut(s)	163, 379, 538, 598, 775, 1129, 1225
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 827, 1027
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	1188
BstSCI	CCNGG	3 cut(s)	237, 478, 633
BstSFI	CTRYAG	2 cut(s)	349, 899
BstV1I	GCAGC	6 cut(s)	121, 447, 694, 1074, 1096, 1123
BstV2I	GAAGAC	3 cut(s)	568, 1043, 1169
BstX2I	RGATCY	1 cut(s)	775
BstXI	CCANNNNNNTGG	1 cut(s)	1196
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	2 cut(s)	196, 1200
BtgI	CCRYGG	2 cut(s)	46, 159
BtsCI	GGATG	2 cut(s)	365, 871
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	64, 176
Cac8I	GCNNGC	2 cut(s)	1004, 1198
CfoI	GCGC	1 cut(s)	1021
Cfr13I	GGNCC	2 cut(s)	194, 1199
CseI	GACGC	1 cut(s)	1037
Csp6I	GTAC	1 cut(s)	740
CviAII	CATG	8 cut(s)	47, 133, 160, 167, 358, 533, 884, 1185
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	3 cut(s)	457, 951, 1167
DpnI	GATC	7 cut(s)	165, 381, 540, 600, 777, 1131, 1227
DpnII	GATC	7 cut(s)	163, 379, 538, 598, 775, 1129, 1225
Eco130I	CCWWGG	2 cut(s)	46, 159
Eco57I	CTGAAG	3 cut(s)	309, 869, 1263
EcoNI	CCTNNNNNAGG	1 cut(s)	939
EcoRI	GAATTC	2 cut(s)	361, 759
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	46, 159
ErhI	CCWWGG	2 cut(s)	46, 159
FaeI	CATG	8 cut(s)	50, 136, 163, 170, 361, 536, 887, 1188
FalI	AAGNNNNNCTT	2 cut(s)	949, 981
FatI	CATG	8 cut(s)	46, 132, 159, 166, 357, 532, 883, 1184
FauI	CCCGC	1 cut(s)	440
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	1 cut(s)	1225
Fnu4HI	GCNGC	8 cut(s)	110, 226, 436, 708, 1046, 1085, 1088, 1112
FokI	GGATG	2 cut(s)	352, 878
Fsp4HI	GCNGC	8 cut(s)	110, 226, 436, 708, 1046, 1085, 1088, 1112
FspBI	CTAG	3 cut(s)	732, 986, 1260
GlaI	GCGC	1 cut(s)	1020
GluI	GCNGC	8 cut(s)	110, 226, 436, 708, 1046, 1085, 1088, 1112
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	730
HaeII	RGCGCY	1 cut(s)	1022
HaeIII	GGCC	2 cut(s)	196, 1200
HapII	CCGG	3 cut(s)	239, 635, 693
HgaI	GACGC	1 cut(s)	1037
HhaI	GCGC	1 cut(s)	1021
Hin1I	GRCGYC	2 cut(s)	1048, 1179
Hin1II	CATG	8 cut(s)	50, 136, 163, 170, 361, 536, 887, 1188
Hin6I	GCGC	1 cut(s)	1019
HinP1I	GCGC	1 cut(s)	1019
HinfI	GANTC	5 cut(s)	233, 293, 769, 1069, 1165
HpaII	CCGG	3 cut(s)	239, 635, 693
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	1177
Hpy188I	TCNGA	6 cut(s)	370, 398, 460, 952, 1170, 1243
Hpy188III	TCNNGA	7 cut(s)	383, 596, 693, 773, 782, 1055, 1214
Hpy8I	GTNNAC	1 cut(s)	1177
Hpy99I	CGWCG	1 cut(s)	1220
HpyAV	CCTTC	7 cut(s)	333, 587, 591, 735, 832, 935, 1238
HpyCH4III	ACNGT	3 cut(s)	288, 567, 1062
HpyCH4IV	ACGT	2 cut(s)	1173, 1179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 827, 1027
HpyF3I	CTNAG	3 cut(s)	457, 951, 1167
HpySE526I	ACGT	2 cut(s)	1173, 1179
Hsp92I	GRCGYC	2 cut(s)	1048, 1179
Hsp92II	CATG	8 cut(s)	50, 136, 163, 170, 361, 536, 887, 1188
HspAI	GCGC	1 cut(s)	1019
Kpn2I	TCCGGA	1 cut(s)	692
Ksp22I	TGATCA	1 cut(s)	1225
Kzo9I	GATC	7 cut(s)	163, 379, 538, 598, 775, 1129, 1225
LmnI	GCTCC	2 cut(s)	359, 1026
Lsp1109I	GCAGC	6 cut(s)	121, 447, 694, 1074, 1096, 1123
MaeI	CTAG	3 cut(s)	732, 986, 1260
MaeII	ACGT	2 cut(s)	1173, 1179
MaeIII	GTNAC	3 cut(s)	174, 637, 1180
MalI	GATC	7 cut(s)	165, 381, 540, 600, 777, 1131, 1227
MboI	GATC	7 cut(s)	163, 379, 538, 598, 775, 1129, 1225
MboII	GAAGA	8 cut(s)	22, 25, 573, 770, 862, 1043, 1109, 1174
MflI	RGATCY	1 cut(s)	775
MlyI	GAGTC	2 cut(s)	287, 1159
MmeI	TCCRAC	2 cut(s)	1044, 1048
MnlI	CCTC	7 cut(s)	207, 239, 269, 324, 466, 700, 1009
MroI	TCCGGA	1 cut(s)	692
MroXI	GAANNNNTTC	1 cut(s)	700
MseI	TTAA	4 cut(s)	53, 468, 872, 888
MspA1I	CMGCKG	3 cut(s)	707, 1045, 1087
MspI	CCGG	3 cut(s)	239, 635, 693
MspR9I	CCNGG	3 cut(s)	239, 480, 635
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	3 cut(s)	254, 827, 1027
NciI	CCSGG	2 cut(s)	239, 635
NcoI	CCATGG	2 cut(s)	46, 159
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	7 cut(s)	163, 379, 538, 598, 775, 1129, 1225
NlaIII	CATG	8 cut(s)	50, 136, 163, 170, 361, 536, 887, 1188
NmuCI	GTSAC	2 cut(s)	174, 1180
NspI	RCATGY	1 cut(s)	1188
PcsI	WCGNNNNNNNCGW	1 cut(s)	789
PdmI	GAANNNNTTC	1 cut(s)	700
PfeI	GAWTC	3 cut(s)	233, 769, 1069
PkrI	GCNGC	8 cut(s)	111, 227, 437, 709, 1047, 1086, 1089, 1113
PleI	GAGTC	2 cut(s)	287, 1159
PpsI	GAGTC	2 cut(s)	287, 1159
PshBI	ATTAAT	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	478
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	478
PspPI	GGNCC	2 cut(s)	194, 1199
PstI	CTGCAG	1 cut(s)	903
PsuI	RGATCY	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	1087
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
SaqAI	TTAA	4 cut(s)	53, 468, 872, 888
SatI	GCNGC	8 cut(s)	110, 226, 436, 708, 1046, 1085, 1088, 1112
Sau3AI	GATC	7 cut(s)	163, 379, 538, 598, 775, 1129, 1225
Sau96I	GGNCC	2 cut(s)	194, 1199
SchI	GAGTC	2 cut(s)	287, 1159
ScrFI	CCNGG	3 cut(s)	239, 480, 635
SfcI	CTRYAG	2 cut(s)	349, 899
SmlI	CTYRAG	2 cut(s)	297, 1115
SmoI	CTYRAG	2 cut(s)	297, 1115
SpeI	ACTAGT	1 cut(s)	1259
SsiI	CCGC	5 cut(s)	226, 433, 705, 938, 1045
SspMI	CTAG	3 cut(s)	732, 986, 1260
StyD4I	CCNGG	3 cut(s)	237, 478, 633
StyI	CCWWGG	2 cut(s)	46, 159
TaaI	ACNGT	3 cut(s)	288, 567, 1062
TaiI	ACGT	2 cut(s)	1176, 1182
TaqI	TCGA	6 cut(s)	231, 390, 413, 763, 910, 1215
TatI	WGTACW	1 cut(s)	739
TauI	GCSGC	2 cut(s)	228, 1048
TfiI	GAWTC	3 cut(s)	233, 769, 1069
Tru1I	TTAA	4 cut(s)	53, 468, 872, 888
Tru9I	TTAA	4 cut(s)	53, 468, 872, 888
TscAI	CASTG	2 cut(s)	64, 183
TseFI	GTSAC	2 cut(s)	174, 1180
TseI	GCWGC	6 cut(s)	109, 435, 707, 1084, 1087, 1111
Tsp45I	GTSAC	2 cut(s)	174, 1180
TspDTI	ATGAA	6 cut(s)	17, 354, 357, 374, 609, 872
TspRI	CASTG	2 cut(s)	64, 183
VspI	ATTAAT	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	939
XapI	RAATTY	5 cut(s)	96, 138, 361, 759, 970
XceI	RCATGY	1 cut(s)	1188
XmnI	GAANNNNTTC	1 cut(s)	700
XspI	CTAG	3 cut(s)	732, 986, 1260
ZraI	GACGTC	1 cut(s)	1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.