Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002461

Physical Location & Seq

Genomic Coordinates Forward (+)

7790858 .. 7792294

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGGATGTCTGCCACAGATTCACAGTTTCACGTTCTAGCTGTTGATGACAGCGTCATCGATCGAAAGCTGATCGAGAGGCTCCTCAAGACCTCATCGTACCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTCTTGAGTTTCTGGGTTTGTATGAGGATGAACAAAGCAGTTCAGATTCACCTTCTGAAGTGGGAGTGAATCTTGTAATTACAGACTACTGTATGCCTGGAATGACAGGATATGATTTGCTCAAGAAAATCAAGGAGTCTTCATCTCTGAGGAACATACCTGTTGTGATCATGTCATCTGAGAATGTGCCTTCAAGAATCACCAGATGCTTGGAAGAAGGGGCTGAGGAGTTTTTCTTAAAGCCAGTGAGACTATCAGACTTGAGTAGGCTTAGACCCCATCTGATGAAATCCAAGTCCAGCAATCAAAACCAAGAAAAACAAGAAGATGAATCTGAAAACTCAGAGACTCAATCACAGGAGCAGGATCATGAACTAGAACAGCAACAACCGCAAACGATGCCGCCCAACAATAACAAGAGGAAGGCAATGGAAGAGGGGCTTTCACCTGATAGAACTAGACCCAGATACAGTGGGATCGCCACTCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

209

Amino Acids

23.42

Weight (kDa)

4.89

Isoelectric Point (pI)

73.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	12 - 132	2.3e-20	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07440 AT2G41310 AT3G57040 AT3G57040
fragaria_vesca	FvH4_6g25290 FvH4_7g02970
malus_domestica	MD02G1288300.v1.1 MD07G1038500.v1.1 MD12G1093500.v1.1 MD14G1086100.v1.1
prunus_persica	Prupe.2G034700_v2.0.a1 Prupe.7G041600_v2.0.a1
pyrus_communis	pycom12g07920 pycom14g07600
rosa_chinensis	RchiOBHm_Chr1g0323961 RchiOBHm_Chr1g0360681 RchiOBHm_Chr2g0125351
rosa_laevigata	RLG00000018858 RLG00000030239
rosa_multiflora	Rmu_sc0002529.1_g000022 Rmu_sc0002631.1_g000008 Rmu_sc0006175.1_g000025 Rmu_sc0006399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118090 Rroxscaffold_4G00326040
rosa_rugosa	Rorug01G0040800 Rorug02G0256900
rosa_samantha	Rh1AG058100 Rh1AG058700 Rh1BG049200 Rh1BG049700 Rh1CG060700 Rh1DG064600 Rh2AG315100 Rh2BG323200 Rh2CG305500 Rh2DG341800
rosa_wichuraiana	Rw0G023530 Rw1G004980 Rw1G005010 Rw2G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	524, 536
AclWI	GGATC	2 cut(s)	507, 617
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	327
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	2 cut(s)	41, 70
AluI	AGCT	2 cut(s)	41, 70
Alw26I	GTCTC	2 cut(s)	376, 473
AlwI	GGATC	2 cut(s)	507, 617
AsuHPI	GGTGA	3 cut(s)	174, 325, 570
BbsI	GAAGAC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	357
BccI	CCATC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	376, 473
BfaI	CTAG	3 cut(s)	38, 509, 591
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	537
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	329, 522
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	4 cut(s)	71, 158, 239, 415
Bsa29I	ATCGAT	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	60
BseGI	GGATG	2 cut(s)	12, 166
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	4 cut(s)	272, 303, 348, 489
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	74, 374
Bsh1285I	CGRYCG	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	64
BsmAI	GTCTC	2 cut(s)	376, 473
Bsp143I	GATC	5 cut(s)	61, 72, 300, 499, 609
BspACI	CCGC	2 cut(s)	524, 536
BspCNI	CTCAG	4 cut(s)	273, 304, 349, 488
BspDI	ATCGAT	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	507, 617
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	377
BssMI	GATC	5 cut(s)	61, 72, 300, 499, 609
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	4 cut(s)	27, 115, 224, 605
Bst6I	CTCTTC	1 cut(s)	561
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstDEI	CTNAG	5 cut(s)	281, 312, 357, 404, 475
BstF5I	GGATG	2 cut(s)	12, 166
BstKTI	GATC	5 cut(s)	64, 75, 303, 502, 612
BstMAI	GTCTC	2 cut(s)	376, 473
BstMBI	GATC	5 cut(s)	61, 72, 300, 499, 609
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	523, 532
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	12, 166
BtsIMutI	CAGTG	2 cut(s)	384, 610
CciI	TCATGA	1 cut(s)	502
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	2 cut(s)	304, 503
CviJI	RGCY	8 cut(s)	41, 70, 82, 134, 356, 376, 403, 574
CviKI_1	RGCY	8 cut(s)	41, 70, 82, 134, 356, 376, 403, 574
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	5 cut(s)	281, 312, 357, 404, 475
DpnI	GATC	5 cut(s)	63, 74, 302, 501, 611
DpnII	GATC	5 cut(s)	61, 72, 300, 499, 609
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco57I	CTGAAG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	229
FaeI	CATG	2 cut(s)	307, 506
FaiI	YATR	6 cut(s)	156, 227, 246, 290, 305, 504
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FatI	CATG	2 cut(s)	303, 502
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	536
FokI	GGATG	2 cut(s)	19, 173
Fsp4HI	GCNGC	1 cut(s)	536
FspBI	CTAG	3 cut(s)	38, 509, 591
GluI	GCNGC	1 cut(s)	536
HgaI	GACGC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	307, 506
HinfI	GANTC	8 cut(s)	20, 119, 179, 202, 269, 330, 464, 481
HphI	GGTGA	3 cut(s)	174, 325, 570
Hpy188I	TCNGA	8 cut(s)	178, 190, 282, 313, 391, 417, 469, 478
Hpy188III	TCNNGA	6 cut(s)	76, 88, 137, 256, 327, 503
HpyAV	CCTTC	4 cut(s)	195, 333, 344, 550
HpyCH4III	ACNGT	4 cut(s)	27, 115, 224, 605
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	523, 532
HpyF3I	CTNAG	5 cut(s)	281, 312, 357, 404, 475
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	307, 506
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	61, 72, 300, 499, 609
LmnI	GCTCC	2 cut(s)	87, 493
LweI	GCATC	2 cut(s)	329, 522
MaeI	CTAG	3 cut(s)	38, 509, 591
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	5 cut(s)	63, 74, 302, 501, 611
MboI	GATC	5 cut(s)	61, 72, 300, 499, 609
MboII	GAAGA	4 cut(s)	264, 359, 470, 578
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	278, 475
MnlI	CCTC	8 cut(s)	72, 95, 103, 151, 276, 352, 546, 562
MseI	TTAA	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	523, 532
NdeII	GATC	5 cut(s)	61, 72, 300, 499, 609
NlaIII	CATG	2 cut(s)	307, 506
NlaIV	GGNNCC	1 cut(s)	83
PagI	TCATGA	1 cut(s)	502
PfeI	GAWTC	6 cut(s)	20, 119, 179, 202, 330, 464
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	537
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	2 cut(s)	277, 475
PpsI	GAGTC	2 cut(s)	277, 475
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	53
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	1 cut(s)	536
Sau3AI	GATC	5 cut(s)	61, 72, 300, 499, 609
SchI	GAGTC	2 cut(s)	278, 475
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	7 cut(s)	36, 43, 72, 95, 187, 295, 583
SfaNI	GCATC	2 cut(s)	329, 522
SfcI	CTRYAG	1 cut(s)	111
SmlI	CTYRAG	4 cut(s)	86, 137, 254, 394
SmoI	CTYRAG	4 cut(s)	86, 137, 254, 394
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	2 cut(s)	524, 536
SspMI	CTAG	3 cut(s)	38, 509, 591
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	4 cut(s)	27, 115, 224, 605
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	60, 64, 75
TasI	AATT	1 cut(s)	210
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	6 cut(s)	20, 119, 179, 202, 330, 464
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	384, 610
TspDTI	ATGAA	5 cut(s)	177, 264, 434, 477, 519
TspRI	CASTG	2 cut(s)	384, 610
Tth111I	GACNNNGTC	1 cut(s)	53
XspI	CTAG	3 cut(s)	38, 509, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.