Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Forward (+)

12245149 .. 12248016

Gene Structure 2868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGATTACCTTCTCACTTAGTAGAAAAGAATGGCTAGTCTTAGCCCACCCCCTGGATCATTTTATGACTTCACTGTCAAGGATGTTAAGGGAAATGATGATCGATCTTAGCATTTACAAGGGAAAAGTTCTGCTGGTCATCAATGTTGCTTCCAAATGTGGACTGACCAACTCAAATTACGATGAGCTGAATGAACTGTATCGAAAGTATAAAGATCAAGGCTTTGAGATTCTGGCATTTCCGTGCAACCAGTTTGGTGATCAGGAACCAGGAAGTAACAAAGAGATTGAAGATTTTGTCTGCACTCGGTTCAAATCGGAGTTTCCCATTTTTGACAAGATTGAAGTAAATGGAGATAATACTGCTCCAGTGTACAAGTTCTTGAAGGAAGGCATGTGGGGACTCTTTGGAGACGATATTCAGTGGAACTTTACCAAGTTTCTAGTTGACAAAGAAGGAGAAGCGTCTCACCGCTATTATCCAAGCACACCCCCCCTTAGCATCGAGCGTGACATCAAGACGCTGTTTGGAATCGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

180

Amino Acids

20.78

Weight (kDa)

5.28

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	30 - 129	6.7e-41	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	52
AccII	CGCG	1 cut(s)	536
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	4 cut(s)	290, 313, 344, 385
AjnI	CCWGG	2 cut(s)	51, 268
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	2 cut(s)	405, 471
AlwI	GGATC	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	269, 461
BciT130I	CCWGG	2 cut(s)	53, 270
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	405, 471
BfaI	CTAG	2 cut(s)	35, 443
Bme1390I	CCNGG	2 cut(s)	53, 270
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	53, 270
BmsI	GCATC	1 cut(s)	510
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	497
Bsa29I	ATCGAT	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	250, 368
BseBI	CCWGG	2 cut(s)	53, 270
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseNI	ACTGG	2 cut(s)	250, 368
BsgI	GTGCAG	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	536
BshVI	ATCGAT	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	405, 471
BsmBI	CGTCTC	2 cut(s)	405, 471
BsmFI	GGGAC	1 cut(s)	414
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	5 cut(s)	55, 99, 103, 214, 259
BspACI	CCGC	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	250, 368
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	5 cut(s)	55, 99, 103, 214, 259
Bst2UI	CCWGG	2 cut(s)	53, 270
Bst4CI	ACNGT	2 cut(s)	75, 198
BstAUI	TGTACA	1 cut(s)	372
BstDEI	CTNAG	4 cut(s)	17, 40, 107, 497
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	536
BstKTI	GATC	5 cut(s)	58, 102, 106, 217, 262
BstMAI	GTCTC	2 cut(s)	405, 471
BstMBI	GATC	5 cut(s)	55, 99, 103, 214, 259
BstNI	CCWGG	2 cut(s)	53, 270
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	51, 268
BstUI	CGCG	1 cut(s)	536
Bsu15I	ATCGAT	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	3 cut(s)	71, 375, 428
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	2 cut(s)	453, 529
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	4 cut(s)	34, 44, 187, 222
CviKI_1	RGCY	4 cut(s)	34, 44, 187, 222
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	4 cut(s)	17, 40, 107, 497
DpnI	GATC	5 cut(s)	57, 101, 105, 216, 261
DpnII	GATC	5 cut(s)	55, 99, 103, 214, 259
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	51, 268
Esp3I	CGTCTC	2 cut(s)	405, 471
FaeI	CATG	1 cut(s)	397
FaiI	YATR	3 cut(s)	65, 210, 395
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	259
FokI	GGATG	1 cut(s)	94
FspBI	CTAG	2 cut(s)	35, 443
GsuI	CTGGAG	1 cut(s)	351
HgaI	GACGC	2 cut(s)	453, 529
Hin1II	CATG	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	229, 402, 531
HphI	GGTGA	2 cut(s)	269, 461
Hpy166II	GTNNAC	3 cut(s)	161, 373, 448
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	3 cut(s)	263, 382, 517
Hpy8I	GTNNAC	3 cut(s)	161, 373, 448
HpyAV	CCTTC	4 cut(s)	19, 379, 383, 449
HpyCH4III	ACNGT	2 cut(s)	75, 198
HpyCH4V	TGCA	2 cut(s)	246, 303
HpyF3I	CTNAG	4 cut(s)	17, 40, 107, 497
Hsp92II	CATG	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	55, 99, 103, 214, 259
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	9 cut(s)	38, 65, 119, 218, 248, 255, 263, 282, 381
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	2 cut(s)	35, 443
MaeIII	GTNAC	2 cut(s)	275, 509
MalI	GATC	5 cut(s)	57, 101, 105, 216, 261
MboI	GATC	5 cut(s)	55, 99, 103, 214, 259
MboII	GAAGA	1 cut(s)	302
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	396
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	53, 270
MvaI	CCWGG	2 cut(s)	53, 270
MvnI	CGCG	1 cut(s)	536
NdeII	GATC	5 cut(s)	55, 99, 103, 214, 259
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	229, 531
PflMI	CCANNNNNTGG	1 cut(s)	52
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	51, 268
PspGI	CCWGG	2 cut(s)	51, 268
PspN4I	GGNNCC	1 cut(s)	267
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	86
Sau3AI	GATC	5 cut(s)	55, 99, 103, 214, 259
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	53, 270
SetI	ASST	2 cut(s)	11, 189
SfaNI	GCATC	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	241
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	472
SspMI	CTAG	2 cut(s)	35, 443
StyD4I	CCNGG	2 cut(s)	51, 268
TaaI	ACNGT	2 cut(s)	75, 198
TaqI	TCGA	3 cut(s)	102, 202, 504
TasI	AATT	1 cut(s)	175
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	229, 531
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	3 cut(s)	78, 375, 428
TseFI	GTSAC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	3 cut(s)	78, 375, 428
Van91I	CCANNNNNTGG	1 cut(s)	52
XceI	RCATGY	1 cut(s)	397
XspI	CTAG	2 cut(s)	35, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.