Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005570

Physical Location & Seq

Genomic Coordinates Forward (+)

17774428 .. 17777031

Gene Structure 2604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGACGGTGGGAATGATTATAAGAAAGGTCTTTGGACAGTGGAGGAGGACAGAATTCTGACGGATTACATCGGGGTGCATGGCAAAGGCAAGTGGAATCGTGTCAATAAAGTCACAGGATTGAAGAGGAGCGGCAAAAGTTGCAGATTAAGGTGGATGAATTATCTAAGTCCCAGCGTGAAGAGAAGTGACTTCTCGGAGGAAGAAATCCTTGGATCGATCTCATCATTCGAGTCCATAACCTCGTTGGCAACAGGTTCTATTTCTTGTCTAATTAGGTGGTCTTTGATTGCTGGCCGTGTTCCTGGGAGAACTGACAATCAAGTGAAGAACCATTGGAATAGTCATTTGAGCAAGAAGCTCGGTGTCAATTCAAAAAGAGGAAAGACAAAAGCCAAGACTTATTCCGACTCAAAACGAGCAAAAAATAATTTCTGCACACCCTCATCAGAGTCAAACTCCGAGTTGCAACCACTTCCCAATTCCGATTCCAATTCTAATATTTCTGGTGATCATGAAGCTGCAGCTGCCATTGATGGATTTGATGAGGAGATGATGAACATCCAGGACCATATTGGCTCTAAAAGTGAGGTTGGTTTTAGTGGCATGTCGGAGGCGACGATGATGAGTAATGACTACTCATTTTGGTTTCACAATGATGACCTTAATCCATATGAGCCCTTATTTATCGGACCCTACTCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

236

Amino Acids

26.15

Weight (kDa)

7.01

Isoelectric Point (pI)

62.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	9 - 56	1.8e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	12 - 70	1.4e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	93 - 117	4.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27920 AT5G14750 AT5G14750 AT5G14750 AT5G14750 AT5G40330
fragaria_vesca	FvH4_5g05280 FvH4_5g05280 FvH4_5g05280
malus_domestica	MD06G1174200.v1.1 MD13G1092300.v1.1 MD13G1092400.v1.1 MD14G1180700.v1.1 MD14G1180900.v1.1 MD14G1181000.v1.1 MD16G1093200.v1.1
prunus_persica	Prupe.1G253400_v2.0.a1 Prupe.5G174200_v2.0.a1
pyrus_communis	pycom06g15550 pycom13g08020 pycom14g15080
rosa_chinensis	RchiOBHm_Chr7g0193591
rosa_laevigata	RLG00000004258
rosa_roxburghii	Rroxscaffold_3G00261980
rosa_rugosa	Rorug07G0010600
rosa_samantha	Rh7AG137400 Rh7BG137600
rosa_wichuraiana	Rw7G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccBSI	CCGCTC	1 cut(s)	132
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	2 cut(s)	124, 375
AjnI	CCWGG	2 cut(s)	304, 564
AjuI	GAANNNNNNNTTGG	2 cut(s)	195, 227
AluBI	AGCT	3 cut(s)	361, 521, 527
AluI	AGCT	3 cut(s)	361, 521, 527
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	3 cut(s)	521, 524, 527
ApoI	RAATTY	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	568, 692
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	568, 692
BanII	GRGCYC	1 cut(s)	681
BbvI	GCAGC	3 cut(s)	508, 514, 536
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	282
BcgI	CGANNNNNNTGC	2 cut(s)	343, 377
BciT130I	CCWGG	2 cut(s)	306, 566
BclI	TGATCA	1 cut(s)	511
BfmI	CTRYAG	1 cut(s)	522
BisI	GCNGC	4 cut(s)	133, 522, 525, 528
BlsI	GCNGC	4 cut(s)	134, 523, 526, 529
Bme1390I	CCNGG	2 cut(s)	306, 566
Bme18I	GGWCC	2 cut(s)	568, 692
BmgT120I	GGNCC	2 cut(s)	568, 692
BmiI	GGNNCC	1 cut(s)	694
BmrFI	CCNGG	2 cut(s)	306, 566
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
Bsa29I	ATCGAT	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	211, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse8I	GATNNNNATC	1 cut(s)	560
BseBI	CCWGG	2 cut(s)	306, 566
BseCI	ATCGAT	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	211, 305
BseGI	GGATG	2 cut(s)	162, 561
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseRI	GAGGAG	3 cut(s)	59, 142, 563
BseXI	GCAGC	3 cut(s)	508, 514, 536
BseYI	CCCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	421
BshFI	GGCC	1 cut(s)	297
BshVI	ATCGAT	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	215, 219, 511
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	1 cut(s)	297
BspDI	ATCGAT	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	1 cut(s)	694
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	211, 305
BssMI	GATC	3 cut(s)	215, 219, 511
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	306, 566
Bst4CI	ACNGT	2 cut(s)	8, 40
Bst6I	CTCTTC	2 cut(s)	119, 176
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	167, 700
BstF5I	GGATG	2 cut(s)	162, 561
BstKTI	GATC	3 cut(s)	218, 222, 514
BstMBI	GATC	3 cut(s)	215, 219, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 527
BstNI	CCWGG	2 cut(s)	306, 566
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	2 cut(s)	304, 564
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	3 cut(s)	508, 514, 536
Bsu15I	ATCGAT	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	162, 561
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	568, 692
ClaI	ATCGAT	1 cut(s)	218
CviAII	CATG	3 cut(s)	80, 515, 607
CviJI	RGCY	7 cut(s)	297, 361, 395, 521, 527, 579, 679
CviKI_1	RGCY	7 cut(s)	297, 361, 395, 521, 527, 579, 679
DdeI	CTNAG	2 cut(s)	167, 700
DpnI	GATC	3 cut(s)	217, 221, 513
DpnII	GATC	3 cut(s)	215, 219, 511
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	119, 176
EarI	CTCTTC	2 cut(s)	119, 176
Eco130I	CCWWGG	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	681
Eco47I	GGWCC	2 cut(s)	568, 692
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	304, 564
EcoT14I	CCWWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	3 cut(s)	83, 518, 610
FaiI	YATR	8 cut(s)	21, 81, 239, 516, 573, 608, 673, 675
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	3 cut(s)	79, 514, 606
FauNDI	CATATG	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	4 cut(s)	133, 522, 525, 528
FokI	GGATG	2 cut(s)	169, 548
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	4 cut(s)	133, 522, 525, 528
GluI	GCNGC	4 cut(s)	133, 522, 525, 528
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	83, 518, 610
HinfI	GANTC	5 cut(s)	97, 233, 410, 452, 488
HphI	GGTGA	1 cut(s)	521
Hpy188I	TCNGA	8 cut(s)	60, 199, 409, 451, 463, 487, 613, 692
Hpy188III	TCNNGA	2 cut(s)	515, 702
Hpy99I	CGWCG	1 cut(s)	622
HpyCH4III	ACNGT	2 cut(s)	8, 40
HpyCH4V	TGCA	5 cut(s)	79, 144, 438, 469, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 527
HpyF3I	CTNAG	2 cut(s)	167, 700
Hsp92II	CATG	3 cut(s)	83, 518, 610
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	215, 219, 511
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	3 cut(s)	508, 514, 536
MaeIII	GTNAC	2 cut(s)	112, 188
MalI	GATC	3 cut(s)	217, 221, 513
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	3 cut(s)	215, 219, 511
MboII	GAAGA	4 cut(s)	136, 193, 215, 340
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	7 cut(s)	54, 160, 273, 370, 430, 481, 493
MlyI	GAGTC	3 cut(s)	242, 404, 461
MmeI	TCCRAC	2 cut(s)	432, 591
MseI	TTAA	2 cut(s)	149, 666
MslI	CAYNNNNRTG	2 cut(s)	74, 657
MspA1I	CMGCKG	1 cut(s)	527
MspR9I	CCNGG	2 cut(s)	306, 566
MvaI	CCWGG	2 cut(s)	306, 566
MwoI	GCNNNNNNNGC	2 cut(s)	141, 527
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	3 cut(s)	215, 219, 511
NlaIII	CATG	3 cut(s)	83, 518, 610
NlaIV	GGNNCC	1 cut(s)	694
NmuCI	GTSAC	2 cut(s)	112, 188
NspI	RCATGY	1 cut(s)	610
PagI	TCATGA	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	97, 488
PfoI	TCCNGGA	1 cut(s)	564
PkrI	GCNGC	4 cut(s)	134, 523, 526, 529
PleI	GAGTC	3 cut(s)	241, 404, 460
PpsI	GAGTC	3 cut(s)	241, 404, 460
PsiI	TTATAA	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	304, 564
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	304, 564
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	2 cut(s)	568, 692
PstI	CTGCAG	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	527
RseI	CAYNNNNRTG	2 cut(s)	74, 657
SaqAI	TTAA	2 cut(s)	149, 666
SatI	GCNGC	4 cut(s)	133, 522, 525, 528
Sau3AI	GATC	3 cut(s)	215, 219, 511
Sau96I	GGNCC	2 cut(s)	568, 692
SchI	GAGTC	3 cut(s)	242, 404, 461
ScrFI	CCNGG	2 cut(s)	306, 566
SduI	GDGCHC	1 cut(s)	681
SfcI	CTRYAG	1 cut(s)	522
SinI	GGWCC	2 cut(s)	568, 692
SmiMI	CAYNNNNRTG	2 cut(s)	74, 657
Sse9I	AATT	7 cut(s)	54, 160, 273, 370, 430, 481, 493
SsiI	CCGC	1 cut(s)	132
SspI	AATATT	1 cut(s)	502
StyD4I	CCNGG	2 cut(s)	304, 564
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	8, 40
TaqI	TCGA	2 cut(s)	218, 231
TasI	AATT	7 cut(s)	54, 160, 273, 370, 430, 481, 493
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	97, 488
Tru1I	TTAA	2 cut(s)	149, 666
Tru9I	TTAA	2 cut(s)	149, 666
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	112, 188
TseI	GCWGC	3 cut(s)	521, 524, 527
Tsp45I	GTSAC	2 cut(s)	112, 188
TspDTI	ATGAA	3 cut(s)	173, 531, 572
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	2 cut(s)	568, 692
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	2 cut(s)	244, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.