Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001728

Physical Location & Seq

Genomic Coordinates Forward (+)

4966985 .. 4968691

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTTCTTTGCAACAACTCCATTCAGGAAACTCACTATGAAATACTTTCCGTGAAACAAGATGCAAGCTATGAGGATATCCGAGCAAGCTACCGATCTGCCATCCTTGATAGTCATCCTGATAAATCACAAAGTACCTCTGGATCGGGAGATAGATTCCTGAAGGTGCAAAAGGCTTGGGAAATCCTTGGCGATTCAAGGTCTCGCACACTTTATGATAGCGCACTGCGAGCTTCGAGTCTTGATGCTATGGTTGCAGAAGATATCAGCTTAAAAGATGTGATGGCTGAAGATGCGGGAGAGGCCATTCAGCTCTTTTACCAGTGCCAGTGTGGTGACTATTTCTTCGTTGATTCTTTGGAGTTGGAGAAGATGGGATATGGTTTGTTAAGAGATGGAAGGAAAATATCTTTCGAGGCACAAAACGCATTGCCAGCATCGCTTGTCATCCCCTGCGGGTCTTGTTCTTTGAAAGAGATGGGTTCTTCAGAAAAAAGCTCTCAGTGGCGGAGCGTGTTCGACGGCGTGAAGCTGAAGACCATCAAAGCAATGCCGGAAGCTCTAATGGCGGAGATCAACACAGCAATCTGCAATCTCGAGTACGCACGCGCCACCGCTCTTGTCGACTCTCCGTCTTCTTCGTCTTCGACGGGGAAAACGGAGATCCCTGATCAACCGGAATACAGTGCACGAATGGCGGACCAAGCCTACAAGGCAGGCTGCGCAGCCTTGGCAGCTGGGAAACTCGACGAGGCCCTTCTCTCTCTGAACACTTCTCTCTCTATGTGCCCGCCTGATCAGACCTCTGCCGTGACCAAGCTCCACTCTTTGATCTCTCTCACATCTCGGCAGCTCCATAAGTCCACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-CSL

Protein Analysis

291

Amino Acids

31.52

Weight (kDa)

5.05

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	11 - 73	1.6e-17	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10130 AT4G10130 AT4G10130 AT4G10130 AT4G10130
fragaria_vesca	FvH4_2g34630
malus_domestica	MD08G1103500.v1.1 MD08G1103600.v1.1 MD15G1084800.v1.1 MD15G1084900.v1.1
prunus_persica	Prupe.1G438600_v2.0.a1 Prupe.1G438700_v2.0.a1
pyrus_communis	pycom08g08490 pycom08g08500 pycom15g08020
rosa_chinensis	RchiOBHm_Chr5g0002021 RchiOBHm_Chr6g0307441 RchiOBHm_Chr6g0307451 RchiOBHm_Chr7g0208301
rosa_laevigata	RLG00000003231 RLG00000010712 RLG00000010713
rosa_multiflora	Rmu_sc0000031.1_g000018 Rmu_sc0000841.1_g000020 Rmu_sc0007869.1_g000024
rosa_roxburghii	Rroxscaffold_3G00250600 Rroxscaffold_7G00160990
rosa_rugosa	Rorug01G0242800 Rorug04G0397800 Rorug06G0145700 Rorug06G0358700 Rorug06G0358700 Rorug07G0102800 Rorug07G0102800 Rorug07G0102900.1
rosa_samantha	Rh1BG163200 Rh1DG193900 Rh6BG430400 Rh6CG484400 Rh6CG484500 Rh6DG471100 Rh6DG471200 Rh7AG237200 Rh7BG232700 Rh7CG253100 Rh7DG243200
rosa_wichuraiana	Rw6G040910 Rw7G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	724
AccBSI	CCGCTC	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	624
AccII	CGCG	1 cut(s)	609
AciI	CCGC	7 cut(s)	296, 456, 508, 569, 615, 698, 791
AclWI	GGATC	2 cut(s)	151, 658
AcuI	CTGAAG	4 cut(s)	182, 309, 471, 554
AfaI	GTAC	2 cut(s)	136, 602
AgsI	TTSAA	2 cut(s)	198, 472
AhdI	GACNNNNNGTC	1 cut(s)	631
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	1 cut(s)	207
Alw44I	GTGCAC	1 cut(s)	687
AlwI	GGATC	2 cut(s)	151, 658
Ama87I	CYCGRG	1 cut(s)	596
AoxI	GGCC	2 cut(s)	303, 753
ApaLI	GTGCAC	1 cut(s)	687
ApeKI	GCWGC	4 cut(s)	720, 725, 734, 850
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspLEI	GCGC	3 cut(s)	224, 611, 725
AspS9I	GGNCC	2 cut(s)	700, 754
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	700
BaeGI	GKGCMC	2 cut(s)	691, 791
BbsI	GAAGAC	3 cut(s)	542, 627, 636
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	4 cut(s)	707, 737, 746, 862
BccI	CCATC	6 cut(s)	110, 277, 367, 389, 472, 548
BceAI	ACGGC	2 cut(s)	538, 794
BclI	TGATCA	2 cut(s)	670, 796
BcoDI	GTCTC	1 cut(s)	207
BglI	GCCNNNNNGGC	1 cut(s)	713
BisI	GCNGC	4 cut(s)	721, 726, 735, 851
BlsI	GCNGC	4 cut(s)	722, 727, 736, 852
Bme18I	GGWCC	1 cut(s)	700
BmeRI	GACNNNNNGTC	1 cut(s)	631
BmeT110I	CYCGRG	1 cut(s)	596
BmgT120I	GGNCC	2 cut(s)	700, 754
BmsI	GCATC	4 cut(s)	52, 235, 283, 446
BpiI	GAAGAC	3 cut(s)	542, 627, 636
BsaBI	GATNNNNATC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	187, 729
BsaWI	WCCGGW	1 cut(s)	676
Bse1I	ACTGG	2 cut(s)	322, 328
Bse3DI	GCAATG	2 cut(s)	428, 555
Bse8I	GATNNNNATC	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	187, 729
BseGI	GGATG	3 cut(s)	102, 115, 447
BseJI	GATNNNNATC	1 cut(s)	114
BseMI	GCAATG	2 cut(s)	428, 555
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	2 cut(s)	322, 328
BseSI	GKGCMC	2 cut(s)	691, 791
BseXI	GCAGC	4 cut(s)	707, 737, 746, 862
BseYI	CCCAGC	1 cut(s)	737
Bsh1236I	CGCG	1 cut(s)	609
BshFI	GGCC	2 cut(s)	305, 755
BsiHKAI	GWGCWC	1 cut(s)	691
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	2 cut(s)	554, 677
BsmAI	GTCTC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	305, 755
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	2 cut(s)	691, 791
Bsp143I	GATC	7 cut(s)	95, 143, 573, 663, 670, 796, 831
BspACI	CCGC	7 cut(s)	296, 456, 508, 569, 615, 698, 791
BspANI	GGCC	2 cut(s)	305, 755
BspCNI	CTCAG	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	609
BspPI	GGATC	2 cut(s)	151, 658
BspTNI	GGTCTC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	617
BsrDI	GCAATG	2 cut(s)	428, 555
BsrI	ACTGG	2 cut(s)	322, 328
BssECI	CCNNGG	2 cut(s)	187, 729
BssMI	GATC	7 cut(s)	95, 143, 573, 663, 670, 796, 831
BssT1I	CCWWGG	2 cut(s)	187, 729
Bst4CI	ACNGT	1 cut(s)	686
BstC8I	GCNNGC	7 cut(s)	67, 88, 231, 435, 607, 718, 791
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	3 cut(s)	102, 115, 447
BstFNI	CGCG	1 cut(s)	609
BstHHI	GCGC	3 cut(s)	224, 611, 725
BstKTI	GATC	7 cut(s)	98, 146, 576, 666, 673, 799, 834
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	7 cut(s)	95, 143, 573, 663, 670, 796, 831
BstSLI	GKGCMC	2 cut(s)	691, 791
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	4 cut(s)	707, 737, 746, 862
BstV2I	GAAGAC	3 cut(s)	542, 627, 636
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	305, 755
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	3 cut(s)	102, 115, 447
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	5 cut(s)	224, 329, 335, 509, 691
Cac8I	GCNNGC	7 cut(s)	67, 88, 231, 435, 607, 718, 791
CfoI	GCGC	3 cut(s)	224, 611, 725
Cfr13I	GGNCC	2 cut(s)	700, 754
Csp6I	GTAC	2 cut(s)	135, 601
CspCI	CAANNNNNGTGG	2 cut(s)	601, 636
CviQI	GTAC	2 cut(s)	135, 601
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	7 cut(s)	97, 145, 575, 665, 672, 798, 833
DpnII	GATC	7 cut(s)	95, 143, 573, 663, 670, 796, 831
DriI	GACNNNNNGTC	1 cut(s)	631
Eam1105I	GACNNNNNGTC	1 cut(s)	631
EciI	GGCGGA	3 cut(s)	523, 584, 713
Eco130I	CCWWGG	2 cut(s)	187, 729
Eco31I	GGTCTC	1 cut(s)	207
Eco32I	GATATC	2 cut(s)	79, 265
Eco47I	GGWCC	1 cut(s)	700
Eco57I	CTGAAG	4 cut(s)	182, 309, 471, 554
Eco88I	CYCGRG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRV	GATATC	2 cut(s)	79, 265
EcoT14I	CCWWGG	2 cut(s)	187, 729
ErhI	CCWWGG	2 cut(s)	187, 729
FaiI	YATR	7 cut(s)	39, 72, 216, 251, 381, 785, 858
FauI	CCCGC	3 cut(s)	289, 449, 798
FbaI	TGATCA	2 cut(s)	670, 796
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	4 cut(s)	721, 726, 735, 851
FokI	GGATG	3 cut(s)	89, 102, 434
Fsp4HI	GCNGC	4 cut(s)	721, 726, 735, 851
FspI	TGCGCA	1 cut(s)	724
GlaI	GCGC	3 cut(s)	223, 610, 724
GluI	GCNGC	4 cut(s)	721, 726, 735, 851
GsaI	CCCAGC	1 cut(s)	741
HaeIII	GGCC	2 cut(s)	305, 755
HapII	CCGG	2 cut(s)	554, 677
HhaI	GCGC	3 cut(s)	224, 611, 725
Hin6I	GCGC	3 cut(s)	222, 609, 723
HinP1I	GCGC	3 cut(s)	222, 609, 723
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	5 cut(s)	156, 194, 238, 353, 626
HpaII	CCGG	2 cut(s)	554, 677
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	3 cut(s)	625, 689, 864
Hpy188I	TCNGA	4 cut(s)	83, 490, 768, 801
Hpy188III	TCNNGA	7 cut(s)	26, 119, 141, 147, 160, 242, 596
Hpy8I	GTNNAC	3 cut(s)	625, 689, 864
Hpy99I	CGWCG	3 cut(s)	524, 652, 752
HpyAV	CCTTC	3 cut(s)	157, 393, 767
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4V	TGCA	6 cut(s)	12, 65, 169, 257, 591, 689
HpyF3I	CTNAG	1 cut(s)	501
HspAI	GCGC	3 cut(s)	222, 609, 723
Ksp22I	TGATCA	2 cut(s)	670, 796
Kzo9I	GATC	7 cut(s)	95, 143, 573, 663, 670, 796, 831
LmnI	GCTCC	3 cut(s)	510, 825, 858
Lsp1109I	GCAGC	4 cut(s)	707, 737, 746, 862
LweI	GCATC	4 cut(s)	52, 235, 283, 446
MaeIII	GTNAC	2 cut(s)	335, 811
MalI	GATC	7 cut(s)	97, 145, 575, 665, 672, 798, 833
MbiI	CCGCTC	1 cut(s)	617
MboI	GATC	7 cut(s)	95, 143, 573, 663, 670, 796, 831
MboII	GAAGA	9 cut(s)	272, 302, 337, 382, 477, 547, 627, 630, 636
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	2 cut(s)	691, 791
MlyI	GAGTC	2 cut(s)	247, 620
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	6 cut(s)	67, 148, 295, 409, 745, 814
MseI	TTAA	2 cut(s)	272, 389
MspA1I	CMGCKG	2 cut(s)	737, 870
MspI	CCGG	2 cut(s)	554, 677
MvnI	CGCG	1 cut(s)	609
NdeII	GATC	7 cut(s)	95, 143, 573, 663, 670, 796, 831
NmeAIII	GCCGAG	1 cut(s)	826
NmuCI	GTSAC	2 cut(s)	335, 811
NsbI	TGCGCA	1 cut(s)	724
PaeR7I	CTCGAG	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	156, 194, 353
PkrI	GCNGC	4 cut(s)	722, 727, 736, 852
PleI	GAGTC	2 cut(s)	246, 620
PpsI	GAGTC	2 cut(s)	246, 620
PspFI	CCCAGC	1 cut(s)	737
PspPI	GGNCC	2 cut(s)	700, 754
PsuI	RGATCY	1 cut(s)	663
PvuII	CAGCTG	2 cut(s)	737, 870
RsaI	GTAC	2 cut(s)	136, 602
RsaNI	GTAC	2 cut(s)	135, 601
SalI	GTCGAC	1 cut(s)	623
SaqAI	TTAA	2 cut(s)	272, 389
SatI	GCNGC	4 cut(s)	721, 726, 735, 851
Sau3AI	GATC	7 cut(s)	95, 143, 573, 663, 670, 796, 831
Sau96I	GGNCC	2 cut(s)	700, 754
SchI	GAGTC	2 cut(s)	247, 620
SduI	GDGCHC	2 cut(s)	691, 791
SfaNI	GCATC	4 cut(s)	52, 235, 283, 446
Sfr274I	CTCGAG	1 cut(s)	596
SinI	GGWCC	1 cut(s)	700
SlaI	CTCGAG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SsiI	CCGC	7 cut(s)	296, 456, 508, 569, 615, 698, 791
StyI	CCWWGG	2 cut(s)	187, 729
TaaI	ACNGT	1 cut(s)	686
TaqI	TCGA	7 cut(s)	236, 414, 519, 597, 624, 647, 747
TfiI	GAWTC	3 cut(s)	156, 194, 353
Tru1I	TTAA	2 cut(s)	272, 389
Tru9I	TTAA	2 cut(s)	272, 389
TscAI	CASTG	5 cut(s)	231, 329, 335, 509, 691
TseFI	GTSAC	2 cut(s)	335, 811
TseI	GCWGC	4 cut(s)	720, 725, 734, 850
Tsp45I	GTSAC	2 cut(s)	335, 811
TspDTI	ATGAA	1 cut(s)	54
TspGWI	ACGGA	3 cut(s)	40, 621, 674
TspRI	CASTG	5 cut(s)	231, 329, 335, 509, 691
VneI	GTGCAC	1 cut(s)	687
VpaK11BI	GGWCC	1 cut(s)	700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.