Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Reverse (-)

8321017 .. 8321553

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGGATGAGAAACCAGAAACTGTGGCGCATCCCGTTGTTCCTAAAGTTGGAAAGGGAGAGGTTGGTGTTGAGGATGGCTGTGTATTTTTGAGCGACAATAAGATAGTTAAAGAATCAGGGAGGCAGAGTGGTAGTGTTAAAGAGTGCTATGAATCTGATGAGATTATTGTGATCGATGATTCTACTGATGATTGTGCTCTGGAGACTGGTAGTTGTATTACTTGGAGTGGTCTCACATCTACTTACAAGTTGCCCCGGAAGATTGCGACGATGGTCCTTCCACATCAGCTTGATGGCCTGAAATGCCTACGGTCTCTGCATTGTCAGGGAAGGGGTGGAATCCTAGGTGATGGCATGGTCTTGGGCAAAACGATGCAGGTAGCGGAAGAGGATACTTTTAACAGATTTATAACTTTGGTGCCCTTTTCTTCTTTTGCAAAATTTATAGGTACTGGTTTTACCTTATTACAGATTTGTAGCTTCGTAGGAGGATTATTTCATTCTATTGCTTTCCCATATAATTTATTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

179

Amino Acids

19.3

Weight (kDa)

5.17

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	421
AciI	CCGC	2 cut(s)	5, 386
AcsI	RAATTY	1 cut(s)	443
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	292, 483
AluI	AGCT	2 cut(s)	292, 483
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	3 cut(s)	200, 239, 321
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	443
AspA2I	CCTAGG	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	277
AvrII	CCTAGG	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	202
BccI	CCATC	4 cut(s)	71, 268, 290, 347
BciVI	GTATCC	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	200, 239, 321
BfaI	CTAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	388
BlnI	CCTAGG	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	2 cut(s)	40, 366
BoxI	GACNNNNGTC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	259
Bsa29I	ATCGAT	1 cut(s)	177
BsaI	GGTCTC	2 cut(s)	239, 321
BsaJI	CCNNGG	2 cut(s)	257, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	214, 460
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	257, 346
BseGI	GGATG	3 cut(s)	13, 31, 82
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	214, 460
BseSI	GKGCMC	1 cut(s)	426
BshFI	GGCC	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	421
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	3 cut(s)	200, 239, 321
BsnI	GGCC	1 cut(s)	300
Bso31I	GGTCTC	2 cut(s)	239, 321
Bsp1286I	GDGCHC	2 cut(s)	202, 426
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	5, 386
BspANI	GGCC	1 cut(s)	300
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	423
BspMI	ACCTGC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	421
BspTNI	GGTCTC	2 cut(s)	239, 321
BsrI	ACTGG	2 cut(s)	214, 460
BssECI	CCNNGG	2 cut(s)	257, 346
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	25, 315
Bst6I	CTCTTC	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	13, 31, 82
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	3 cut(s)	200, 239, 321
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	426
Bsu15I	ATCGAT	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	13, 31, 82
BveI	ACCTGC	1 cut(s)	370
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	4 cut(s)	81, 292, 300, 483
CviKI_1	RGCY	4 cut(s)	81, 292, 300, 483
CviQI	GTAC	1 cut(s)	453
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	346
Eco31I	GGTCTC	2 cut(s)	239, 321
Eco47I	GGWCC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	1 cut(s)	361
FaiI	YATR	6 cut(s)	153, 359, 413, 449, 520, 522
FatI	CATG	1 cut(s)	357
FokI	GGATG	3 cut(s)	18, 20, 89
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	1 cut(s)	259
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	4 cut(s)	116, 155, 182, 342
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	1 cut(s)	362
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	290, 327
HpyCH4III	ACNGT	2 cut(s)	25, 315
HpyCH4V	TGCA	3 cut(s)	322, 379, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	9 cut(s)	30, 105, 188, 195, 272, 314, 314, 365, 441
LweI	GCATC	2 cut(s)	40, 366
MaeI	CTAG	1 cut(s)	347
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	274, 401, 423
MhlI	GDGCHC	2 cut(s)	202, 426
MluCI	AATT	2 cut(s)	443, 523
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	5 cut(s)	55, 67, 117, 385, 485
MseI	TTAA	3 cut(s)	111, 141, 402
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	306
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	423
PfeI	GAWTC	4 cut(s)	116, 155, 182, 342
PshAI	GACNNNNGTC	1 cut(s)	275
PsiI	TTATAA	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SaqAI	TTAA	3 cut(s)	111, 141, 402
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	2 cut(s)	202, 426
SetI	ASST	7 cut(s)	66, 294, 352, 384, 454, 467, 485
SfaNI	GCATC	2 cut(s)	40, 366
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	2 cut(s)	443, 523
SsiI	CCGC	2 cut(s)	5, 386
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	25, 315
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	443, 523
TfiI	GAWTC	4 cut(s)	116, 155, 182, 342
Tru1I	TTAA	3 cut(s)	111, 141, 402
Tru9I	TTAA	3 cut(s)	111, 141, 402
TspDTI	ATGAA	2 cut(s)	168, 491
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	443
XmaJI	CCTAGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.