Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002476

Physical Location & Seq

Genomic Coordinates Reverse (-)

15112098 .. 15114551

Gene Structure 2454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGCCGTACTCAACATTTCGATTGAATTTGTCTGTGACGTCGCCGTATAATGCTGACTTTGACGGGGATGAAATGAACATGCATGTGCCCCAGTCCTTTGAAACCAGGGCTGAAGTATTGGAGCTCATGATGGTGCCAAAATGCATCGTCTCACCTCAGTCAAATCGACCTGTCATGGGAATTGTTCAGGACACACTTTTAGGTTGTCGTAAGATCACTAAGAGGGACACCTTTATAGAGAAGGATGTTTTCATGAATATCTTGATGTGGTGGGAGGATTTTGATGGAAAAGTTCCTGCTCCTGCAATTTTGAAGCCCCGGCCACTTTGGACTGGAAAACAGGTGTTCAATCTTATAATACCAAAACAAATAAATCTCCAAAGAACTTCTGCATGGCACTCGGAATCAGAGAGTGGGAACATAACTCCAGGGGATACTCTTGTTAGAATAGAAAAGGGTGAATTGCTTTCTGGAACTCTCTGCAAGAAGGCCCTTGGGACTTCTACAGGAAGTCTTATTCATGTTATATGGGAAGAGGTTGGTCCAGATGCAGCCCGCAAGTTTCTGGGTCATACCCAATGGCTTGTGAATTACTGGCTGCTGCAGAATGCTTTTAGCATTGGAATTGGAGATACGATTGCTGATGCAGCCACAATGGAGAAAATCAATGAAACAATTTCCAAGGCGAAAAATGAGGTGAAAGATCTTATAAGTAAAGCCCAATCTAAGCAGCTGGAGGCTGAACCTGGACGAACCATGATGGATTCGTTTGAAAACAAAGTGAACCAGGTGTTGAATAGGGCTCGTGATGATGCTGGAAGTAGTGCTCAAAAGAGTTTAGATGAGAGCAACAATCTTAAGGCCATGGTTACAGCAGGGTCCAAAGGGAGTTTTATCAACATATCACAGATGACTGCTTGTGTGGGACAGCAGAACGTTGAGGGTAAGCGAATCCCGTACGGGTTCATAGACCGGACGTTGCCCCACTTTACTAAAGATGATTATGGACCAGAAAGTCGTGGATTTGTAGAGAATTCATACCTGCGTGGACTAACTCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATAGATACTGCTGTTAAGACATCTGAGACTGGGTACATCCAAAGGAGACTGGTGAAGGCTATGGAGGATATTATGGTGAAATATGATGGCACAGTACGTAATTCTTTGGGTGATGTCATTCAGTTTCTATATGGGGAAGATGGGATGGATGCTGTTTGGATAGAATCACAAAAGCTGGATTCTTTGAAAATGAAGAAAACAGAATTTGATAAGACTTTTACTTATGAGTTGGATGATGAATATTGGAATCCCGACTACATGTTGCACGAACATGTTGAGGATCTCAAAACGATTAGAGAGTTTCGTAACGTGTTTGATGCAGAAGTTCAGAAACTTGAAACAGATAGATTACAACTTGGAACAGAGATTGCAGTCACAGGTGATAATTCTTGGCCACTGCCTGTTAACTTGAAGAGGCTTATTTGGAATGCACAAAAAACCTTTAAGATTGACTTCCGAAGGACTTCTGATATGCACCCGATGGAAATTGTGGAAGCTATTGATAAGCTGCAGGAGAGACTGAAAGTTGTTCCTGGTGATGACTTGTTGAGTGTCGAAGCGCAGAAGAATGCAACATTGTTTTTCAACATTTTACTTCGCAGCACTTTCGCAAGCAAACGGGTGTTGGATGAGTACAGGCTTACTCGTGAAGCATTTGAGTGGGTTATTGGGGAGATAGAATCACGCTTCCTGCAATCGCTTGTAGCACCTGGGGAAATGATTGGCTGCGTTGCTGCACAGTCTATTGGAGAACCTGCCACTCAGATGACACTGAATACTTTCCACTACGCAGGTGTGAGTGCAAAGAATGTTACCCTAGGTGTCCCCAGGTTGAGGGAAATTATTAATGTAGCCAAGAGAATCAAAACGCCATCCCTGTCTGTCTACTTAAAGCCTGAAGCTAATAAAACGAAGGAGAGGGCGAAGAATGTGCAGTGTGCTTTGGAATACACCACTTTGCGAAGTGTAACTCAAGCTACAGAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005773 GO:0005911 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_R

Protein Analysis

697

Amino Acids

78.73

Weight (kDa)

5.8

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_2	PF00623	1 - 45	7.9e-19	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	48 - 212	1.1e-52	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	238 - 343	8.7e-39	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	350 - 684	4.9e-70	RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6	PF04992	416 - 600	2.5e-68	RNA polymerase Rpb1, domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35800 AT4G35800
fragaria_vesca	FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070 FvH4_1g11070
malus_domestica	MD02G1123200.v1.1 MD02G1123400.v1.1 MD02G1125500.v1.1 MD02G1125800.v1.1 MD15G1237200.v1.1
prunus_persica	Prupe.7G175200_v2.0.a1
pyrus_communis	pycom02g09610 pycom15g21110
rosa_chinensis	RchiOBHm_Chr2g0098321 RchiOBHm_Chr2g0098331
rosa_laevigata	RLG00000016790 RLG00000016791
rosa_multiflora	Rmu_co8358581.1_g000001 Rmu_sc0003434.1_g000008 Rmu_sc0023772.1_g000002 Rmu_sc0042863.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144060 Rroxscaffold_2G00144070
rosa_rugosa	Rorug02G0072000 Rorug02G0072000 Rorug02G0072100
rosa_samantha	Rh2AG119100 Rh2AG119200 Rh2BG122300 Rh2BG122400 Rh2CG123900 Rh2CG124000 Rh2DG123900 Rh2DG124000
rosa_wichuraiana	Rw2G009330 Rw2G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	356, 710
AarI	CACCTGC	1 cut(s)	1883
AasI	GACNNNNNNGTC	1 cut(s)	1014
AatII	GACGTC	1 cut(s)	41
Acc36I	ACCTGC	3 cut(s)	1050, 1864, 1883
AccB1I	GGYRCC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	1986
AciI	CCGC	1 cut(s)	556
AclI	AACGTT	1 cut(s)	936
AclWI	GGATC	1 cut(s)	1389
AcoI	YGGCCR	2 cut(s)	320, 1493
AcsI	RAATTY	3 cut(s)	25, 1033, 1304
AcuI	CTGAAG	2 cut(s)	132, 2019
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	5 cut(s)	8, 959, 1136, 1197, 1736
AfiI	CCNNNNNNNGG	2 cut(s)	176, 1935
AflII	CTTAAG	1 cut(s)	857
AflIII	ACRYGT	3 cut(s)	1359, 1372, 1410
AjnI	CCWGG	7 cut(s)	104, 427, 745, 786, 1633, 1810, 1928
AluBI	AGCT	7 cut(s)	124, 733, 1276, 1598, 1609, 2003, 2078
AluI	AGCT	7 cut(s)	124, 733, 1276, 1598, 1609, 2003, 2078
Alw21I	GWGCWC	2 cut(s)	126, 829
Alw26I	GTCTC	4 cut(s)	154, 1121, 1141, 1612
AlwI	GGATC	1 cut(s)	1389
AoxI	GGCC	4 cut(s)	320, 489, 861, 1493
ApeKI	GCWGC	9 cut(s)	551, 598, 601, 647, 730, 1609, 1701, 1827, 1835
ApoI	RAATTY	3 cut(s)	25, 1033, 1304
AseI	ATTAAT	1 cut(s)	1947
Asp700I	GAANNNNTTC	2 cut(s)	1564, 1880
AspA2I	CCTAGG	1 cut(s)	1918
AspLEI	GCGC	1 cut(s)	1663
AspS9I	GGNCC	4 cut(s)	490, 542, 879, 1007
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	8 cut(s)	144, 470, 709, 1165, 1189, 1223, 1493, 1649
AvaII	GGWCC	3 cut(s)	542, 879, 1007
AvrII	CCTAGG	1 cut(s)	1918
BaeGI	GKGCMC	1 cut(s)	90
BaeI	ACNNNNGTAYC	4 cut(s)	426, 459, 1098, 1131
BalI	TGGCCA	1 cut(s)	1495
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	126, 805
BauI	CACGAG	2 cut(s)	804, 1746
Bbv12I	GWGCWC	2 cut(s)	126, 829
BbvI	GCAGC	9 cut(s)	563, 585, 588, 659, 742, 1596, 1713, 1814, 1822
BccI	CCATC	8 cut(s)	124, 278, 754, 1181, 1235, 1240, 1576, 1981
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	6 cut(s)	381, 415, 1690, 1724, 2014, 2048
BciT130I	CCWGG	7 cut(s)	106, 429, 747, 788, 1635, 1812, 1930
BciVI	GTATCC	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	4 cut(s)	154, 1121, 1141, 1612
BfaI	CTAG	1 cut(s)	1919
BfmI	CTRYAG	4 cut(s)	504, 602, 1610, 2079
BfrI	CTTAAG	1 cut(s)	857
BfuAI	ACCTGC	3 cut(s)	1050, 1864, 1883
BfuI	GTATCC	1 cut(s)	427
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	9 cut(s)	552, 599, 602, 648, 731, 1610, 1702, 1828, 1836
BlnI	CCTAGG	1 cut(s)	1918
BlsI	GCNGC	9 cut(s)	553, 600, 603, 649, 732, 1611, 1703, 1829, 1837
Bme1390I	CCNGG	8 cut(s)	106, 319, 429, 747, 788, 1635, 1812, 1930
Bme18I	GGWCC	3 cut(s)	542, 879, 1007
BmgT120I	GGNCC	4 cut(s)	490, 542, 879, 1007
BmiI	GGNNCC	2 cut(s)	135, 880
BmrFI	CCNGG	8 cut(s)	106, 319, 429, 747, 788, 1635, 1812, 1930
BmrI	ACTGGG	2 cut(s)	85, 1140
BmsI	GCATC	6 cut(s)	153, 538, 634, 802, 1240, 1408
BmuI	ACTGGG	2 cut(s)	85, 1140
BpmI	CTGGAG	2 cut(s)	411, 755
BpuEI	CTTGAG	1 cut(s)	2058
BpuMI	CCSGG	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	1199
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	9 cut(s)	105, 317, 428, 493, 681, 864, 1811, 1918, 1928
BsaWI	WCCGGW	1 cut(s)	972
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 1935
Bse1I	ACTGG	5 cut(s)	91, 337, 599, 1135, 1155
BseBI	CCWGG	7 cut(s)	106, 429, 747, 788, 1635, 1812, 1930
BseDI	CCNNGG	9 cut(s)	105, 317, 428, 493, 681, 864, 1811, 1918, 1928
BseGI	GGATG	8 cut(s)	73, 250, 1137, 1251, 1255, 1339, 1735, 1973
BseLI	CCNNNNNNNGG	2 cut(s)	176, 1935
BseMII	CTCAG	3 cut(s)	170, 1116, 1877
BseNI	ACTGG	5 cut(s)	91, 337, 599, 1135, 1155
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	9 cut(s)	563, 585, 588, 659, 742, 1596, 1713, 1814, 1822
BsgI	GTGCAG	2 cut(s)	1821, 2054
BshFI	GGCC	4 cut(s)	322, 491, 863, 1495
BshNI	GGYRCC	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	126, 829
BsiSI	CCGG	2 cut(s)	319, 973
BsiWI	CGTACG	1 cut(s)	957
BslFI	GGGAC	4 cut(s)	239, 511, 939, 1910
BslI	CCNNNNNNNGG	2 cut(s)	176, 1935
BsmAI	GTCTC	4 cut(s)	154, 1121, 1141, 1612
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	4 cut(s)	239, 511, 939, 1910
BsmI	GAATGC	3 cut(s)	613, 1534, 1675
BsnI	GGCC	4 cut(s)	322, 491, 863, 1495
Bsp1286I	GDGCHC	4 cut(s)	90, 126, 805, 829
Bsp143I	GATC	3 cut(s)	213, 703, 1381
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	1 cut(s)	556
BspANI	GGCC	4 cut(s)	322, 491, 863, 1495
BspCNI	CTCAG	3 cut(s)	169, 1117, 1876
BspHI	TCATGA	2 cut(s)	126, 252
BspLI	GGNNCC	2 cut(s)	135, 880
BspMAI	CTGCAG	2 cut(s)	606, 1614
BspMI	ACCTGC	3 cut(s)	1050, 1864, 1883
BspPI	GGATC	1 cut(s)	1389
BspT107I	GGYRCC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	857
BsrI	ACTGG	5 cut(s)	91, 337, 599, 1135, 1155
BssECI	CCNNGG	9 cut(s)	105, 317, 428, 493, 681, 864, 1811, 1918, 1928
BssMI	GATC	3 cut(s)	213, 703, 1381
BssNI	GRCGYC	1 cut(s)	38
BssSI	CACGAG	2 cut(s)	804, 1746
BssT1I	CCWWGG	4 cut(s)	493, 681, 864, 1918
Bst2BI	CACGAG	2 cut(s)	804, 1746
Bst2UI	CCWGG	7 cut(s)	106, 429, 747, 788, 1635, 1812, 1930
Bst4CI	ACNGT	2 cut(s)	1195, 1842
Bst6I	CTCTTC	2 cut(s)	528, 1508
BstACI	GRCGYC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	857
BstBAI	YACGTR	1 cut(s)	1199
BstC8I	GCNNGC	2 cut(s)	556, 1714
BstDEI	CTNAG	5 cut(s)	156, 219, 726, 1125, 1863
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	8 cut(s)	73, 250, 1137, 1251, 1255, 1339, 1735, 1973
BstHHI	GCGC	1 cut(s)	1663
BstKTI	GATC	3 cut(s)	216, 706, 1384
BstMAI	GTCTC	4 cut(s)	154, 1121, 1141, 1612
BstMBI	GATC	3 cut(s)	213, 703, 1381
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstNI	CCWGG	7 cut(s)	106, 429, 747, 788, 1635, 1812, 1930
BstNSI	RCATGY	4 cut(s)	82, 86, 1363, 1376
BstSCI	CCNGG	8 cut(s)	104, 317, 427, 745, 786, 1633, 1810, 1928
BstSFI	CTRYAG	4 cut(s)	504, 602, 1610, 2079
BstSLI	GKGCMC	1 cut(s)	90
BstSNI	TACGTA	1 cut(s)	1199
BstV1I	GCAGC	9 cut(s)	563, 585, 588, 659, 742, 1596, 1713, 1814, 1822
BstX2I	RGATCY	2 cut(s)	703, 1381
BstYI	RGATCY	2 cut(s)	703, 1381
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	4 cut(s)	322, 491, 863, 1495
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	8 cut(s)	73, 250, 1137, 1251, 1255, 1339, 1735, 1973
BtsI	GCAGTG	2 cut(s)	1496, 2042
BtsIMutI	CAGTG	3 cut(s)	1496, 1871, 2042
BveI	ACCTGC	3 cut(s)	1050, 1864, 1883
Cac8I	GCNNGC	2 cut(s)	556, 1714
CciI	TCATGA	2 cut(s)	126, 252
CfoI	GCGC	1 cut(s)	1663
Cfr13I	GGNCC	4 cut(s)	490, 542, 879, 1007
CsiI	ACCWGGT	1 cut(s)	786
Csp6I	GTAC	5 cut(s)	7, 958, 1135, 1196, 1735
CviQI	GTAC	5 cut(s)	7, 958, 1135, 1196, 1735
DdeI	CTNAG	5 cut(s)	156, 219, 726, 1125, 1863
DpnI	GATC	3 cut(s)	215, 705, 1383
DpnII	GATC	3 cut(s)	213, 703, 1381
DrdI	GACNNNNNNGTC	1 cut(s)	1014
DseDI	GACNNNNNNGTC	1 cut(s)	1014
EaeI	YGGCCR	2 cut(s)	320, 1493
Eam1104I	CTCTTC	2 cut(s)	528, 1508
EarI	CTCTTC	2 cut(s)	528, 1508
Ecl136II	GAGCTC	1 cut(s)	124
Eco105I	TACGTA	1 cut(s)	1199
Eco130I	CCWWGG	4 cut(s)	493, 681, 864, 1918
Eco24I	GRGCYC	2 cut(s)	126, 805
Eco47I	GGWCC	3 cut(s)	542, 879, 1007
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	132, 2019
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	1033
EcoRII	CCWGG	7 cut(s)	104, 427, 745, 786, 1633, 1810, 1928
EcoT14I	CCWWGG	4 cut(s)	493, 681, 864, 1918
EcoT22I	ATGCAT	2 cut(s)	84, 146
EcoT38I	GRGCYC	2 cut(s)	126, 805
ErhI	CCWWGG	4 cut(s)	493, 681, 864, 1918
Esp3I	CGTCTC	1 cut(s)	154
FalI	AAGNNNNNCTT	2 cut(s)	1538, 1570
FaqI	GGGAC	4 cut(s)	239, 511, 939, 1910
FauI	CCCGC	1 cut(s)	563
FblI	GTMKAC	1 cut(s)	1986
Fnu4HI	GCNGC	9 cut(s)	552, 599, 602, 648, 731, 1610, 1702, 1828, 1836
FokI	GGATG	8 cut(s)	80, 257, 1124, 1258, 1262, 1346, 1742, 1960
FriOI	GRGCYC	2 cut(s)	126, 805
Fsp4HI	GCNGC	9 cut(s)	552, 599, 602, 648, 731, 1610, 1702, 1828, 1836
FspBI	CTAG	1 cut(s)	1919
GlaI	GCGC	1 cut(s)	1662
GluI	GCNGC	9 cut(s)	552, 599, 602, 648, 731, 1610, 1702, 1828, 1836
GsuI	CTGGAG	2 cut(s)	411, 755
HaeIII	GGCC	4 cut(s)	322, 491, 863, 1495
HapII	CCGG	2 cut(s)	319, 973
HhaI	GCGC	1 cut(s)	1663
Hin1I	GRCGYC	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	1661
HinP1I	GCGC	1 cut(s)	1661
HincII	GTYRAC	1 cut(s)	1507
HindII	GTYRAC	1 cut(s)	1507
HinfI	GANTC	8 cut(s)	404, 764, 951, 1265, 1280, 1348, 1781, 1962
HpaI	GTTAAC	1 cut(s)	1507
HpaII	CCGG	2 cut(s)	319, 973
HphI	GGTGA	8 cut(s)	144, 470, 709, 1165, 1189, 1223, 1493, 1649
Hpy166II	GTNNAC	4 cut(s)	784, 1049, 1507, 1987
Hpy188I	TCNGA	7 cut(s)	403, 409, 1126, 1431, 1559, 1570, 1866
Hpy188III	TCNNGA	9 cut(s)	127, 188, 253, 262, 471, 545, 806, 1352, 1748
Hpy8I	GTNNAC	4 cut(s)	784, 1049, 1507, 1987
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	6 cut(s)	235, 481, 1088, 1150, 1554, 2008
HpyCH4III	ACNGT	2 cut(s)	1195, 1842
HpyCH4IV	ACGT	5 cut(s)	38, 936, 977, 1198, 1410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	5 cut(s)	156, 219, 726, 1125, 1863
HpySE526I	ACGT	5 cut(s)	38, 936, 977, 1198, 1410
Hsp92I	GRCGYC	1 cut(s)	38
HspAI	GCGC	1 cut(s)	1661
KspAI	GTTAAC	1 cut(s)	1507
Kzo9I	GATC	3 cut(s)	213, 703, 1381
LmnI	GCTCC	2 cut(s)	121, 304
Lsp1109I	GCAGC	9 cut(s)	563, 585, 588, 659, 742, 1596, 1713, 1814, 1822
LweI	GCATC	6 cut(s)	153, 538, 634, 802, 1240, 1408
MabI	ACCWGGT	1 cut(s)	786
MaeI	CTAG	1 cut(s)	1919
MaeII	ACGT	5 cut(s)	38, 936, 977, 1198, 1410
MaeIII	GTNAC	6 cut(s)	34, 868, 1406, 1474, 1912, 2068
MalI	GATC	3 cut(s)	215, 705, 1383
MboI	GATC	3 cut(s)	213, 703, 1381
MboII	GAAGA	6 cut(s)	545, 1250, 1306, 1525, 1678, 2038
MflI	RGATCY	2 cut(s)	703, 1381
MhlI	GDGCHC	4 cut(s)	90, 126, 805, 829
MlsI	TGGCCA	1 cut(s)	1495
MluNI	TGGCCA	1 cut(s)	1495
MmeI	TCCRAC	2 cut(s)	1311, 1707
Mox20I	TGGCCA	1 cut(s)	1495
Mph1103I	ATGCAT	2 cut(s)	84, 146
MroXI	GAANNNNTTC	2 cut(s)	1564, 1880
MscI	TGGCCA	1 cut(s)	1495
MseI	TTAA	6 cut(s)	858, 1116, 1506, 1545, 1947, 1991
MslI	CAYNNNNRTG	5 cut(s)	83, 131, 1371, 1759, 1865
Msp20I	TGGCCA	1 cut(s)	1495
MspA1I	CMGCKG	1 cut(s)	733
MspCI	CTTAAG	1 cut(s)	857
MspI	CCGG	2 cut(s)	319, 973
MspR9I	CCNGG	8 cut(s)	106, 319, 429, 747, 788, 1635, 1812, 1930
Mva1269I	GAATGC	3 cut(s)	613, 1534, 1675
MvaI	CCWGG	7 cut(s)	106, 429, 747, 788, 1635, 1812, 1930
MwoI	GCNNNNNNNGC	1 cut(s)	647
NciI	CCSGG	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	3 cut(s)	213, 703, 1381
NlaIV	GGNNCC	2 cut(s)	135, 880
NmuCI	GTSAC	2 cut(s)	34, 1474
NsiI	ATGCAT	2 cut(s)	84, 146
NspI	RCATGY	4 cut(s)	82, 86, 1363, 1376
PagI	TCATGA	2 cut(s)	126, 252
PaqCI	CACCTGC	1 cut(s)	1883
PciI	ACATGT	2 cut(s)	1359, 1372
PctI	GAATGC	3 cut(s)	613, 1534, 1675
PdmI	GAANNNNTTC	2 cut(s)	1564, 1880
PfeI	GAWTC	8 cut(s)	404, 764, 951, 1265, 1280, 1348, 1781, 1962
Pfl23II	CGTACG	1 cut(s)	957
PkrI	GCNGC	9 cut(s)	553, 600, 603, 649, 732, 1611, 1703, 1829, 1837
Ppu21I	YACGTR	1 cut(s)	1199
PscI	ACATGT	2 cut(s)	1359, 1372
PshBI	ATTAAT	1 cut(s)	1947
PsiI	TTATAA	2 cut(s)	356, 710
Psp124BI	GAGCTC	1 cut(s)	126
Psp1406I	AACGTT	1 cut(s)	936
Psp6I	CCWGG	7 cut(s)	104, 427, 745, 786, 1633, 1810, 1928
PspGI	CCWGG	7 cut(s)	104, 427, 745, 786, 1633, 1810, 1928
PspLI	CGTACG	1 cut(s)	957
PspN4I	GGNNCC	2 cut(s)	135, 880
PspPI	GGNCC	4 cut(s)	490, 542, 879, 1007
PstI	CTGCAG	2 cut(s)	606, 1614
PsuI	RGATCY	2 cut(s)	703, 1381
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	5 cut(s)	8, 959, 1136, 1197, 1736
RsaNI	GTAC	5 cut(s)	7, 958, 1135, 1196, 1735
RseI	CAYNNNNRTG	5 cut(s)	83, 131, 1371, 1759, 1865
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	6 cut(s)	858, 1116, 1506, 1545, 1947, 1991
SatI	GCNGC	9 cut(s)	552, 599, 602, 648, 731, 1610, 1702, 1828, 1836
Sau3AI	GATC	3 cut(s)	213, 703, 1381
Sau96I	GGNCC	4 cut(s)	490, 542, 879, 1007
ScrFI	CCNGG	8 cut(s)	106, 319, 429, 747, 788, 1635, 1812, 1930
SduI	GDGCHC	4 cut(s)	90, 126, 805, 829
SexAI	ACCWGGT	1 cut(s)	786
SfaNI	GCATC	6 cut(s)	153, 538, 634, 802, 1240, 1408
SfcI	CTRYAG	4 cut(s)	504, 602, 1610, 2079
SinI	GGWCC	3 cut(s)	542, 879, 1007
SmiMI	CAYNNNNRTG	5 cut(s)	83, 131, 1371, 1759, 1865
SmlI	CTYRAG	2 cut(s)	857, 2073
SmoI	CTYRAG	2 cut(s)	857, 2073
SnaBI	TACGTA	1 cut(s)	1199
SsiI	CCGC	1 cut(s)	556
SspI	AATATT	1 cut(s)	1343
SspMI	CTAG	1 cut(s)	1919
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	8 cut(s)	104, 317, 427, 745, 786, 1633, 1810, 1928
StyI	CCWWGG	4 cut(s)	493, 681, 864, 1918
TaaI	ACNGT	2 cut(s)	1195, 1842
TaiI	ACGT	5 cut(s)	41, 939, 980, 1201, 1413
TaqI	TCGA	3 cut(s)	19, 166, 1656
TatI	WGTACW	1 cut(s)	1734
TfiI	GAWTC	8 cut(s)	404, 764, 951, 1265, 1280, 1348, 1781, 1962
Tru1I	TTAA	6 cut(s)	858, 1116, 1506, 1545, 1947, 1991
Tru9I	TTAA	6 cut(s)	858, 1116, 1506, 1545, 1947, 1991
TscAI	CASTG	3 cut(s)	1503, 1878, 2042
TseFI	GTSAC	2 cut(s)	34, 1474
TseI	GCWGC	9 cut(s)	551, 598, 601, 647, 730, 1609, 1701, 1827, 1835
Tsp45I	GTSAC	2 cut(s)	34, 1474
TspRI	CASTG	3 cut(s)	1503, 1878, 2042
Vha464I	CTTAAG	1 cut(s)	857
VpaK11BI	GGWCC	3 cut(s)	542, 879, 1007
VspI	ATTAAT	1 cut(s)	1947
XapI	RAATTY	3 cut(s)	25, 1033, 1304
XceI	RCATGY	4 cut(s)	82, 86, 1363, 1376
XmaJI	CCTAGG	1 cut(s)	1918
XmiI	GTMKAC	1 cut(s)	1986
XmnI	GAANNNNTTC	2 cut(s)	1564, 1880
XspI	CTAG	1 cut(s)	1919
ZraI	GACGTC	1 cut(s)	39
Zsp2I	ATGCAT	2 cut(s)	84, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.