Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Reverse (-)

22316555 .. 22318029

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAGTTATTTCCCATCAATGGATGGAGTTTCGATTCTTTTGAAGAGAACCCAGTTCTGGTTTCCTCAATTAATCCTCAATTTGTTGGATCCTCCACCACACAACCAACCTTTGAAGAATGCCCATTCACCACCACCACTACTGCCTCCTCCTCCTCCTCCTCCTACCCTTTTGCTGTTGGTGGCCTCTGTGCAGTCCCAGAGATTAATAACACTACTACCCCTCCTCCATTTCCTCCACAAGATCGATCAGGATTACCCTTCAATGGTGGAAGATGAAGAGTTTGGTAATTTTCTTGGGAGTGAAAACCACAGCAGCTGCTTGGAGTTGGAAGAAAGCAAGAACAACAATAATATCAGTACTTGCAAAGTTGAGATGGACCAGCAAGCAGCAGATCATCACATTATACCTTCAGCTTTTACCATGGGATTGTGTGGTGAAAAGAGAAGCAGTAAGTCTAAGAAGTTAGAAGGGCAGCCTTCAAAGAATCTTATGGCAGAGAGAAGAAGAAGGAAGCGCTTGAATGACCGCCTTTCCATGCTCAGATCAATTGTCCCAAAGATTAGCAAGATGGACAGAACATCTATACTTGGAGACACAATAGATTATATGAAAGAGCTTTTGGAAAGATCGATCAATAAGTTGCAAGAAGAAGGGGTTGAAGAGGGTACCAATCAAATCAGCTTAATGGGCACCTCCAAGGACCTAAACCCCAGTGAGTTTGATGTGGAGAGGAGAGACAAAGATACCAGGATAGACATATGCTGTGCAACCAAGCCAGGATTGCTGCTGTCAACAGTGAACACTATAGAAGCATTAGGGCTTGAGATTCAACAGTGTGTTATAAGTTGTTTCAATGATTTTTCAATGCAAGCTTCATGTTTTGAGGGAGCTGGGCAGAGAGATTTATTAAGTCCTCAGGACATAAAGCAAGCATTGTTCAGAAATGCAGGATATGGAGGAAGATGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

325

Amino Acids

36.43

Weight (kDa)

6.02

Isoelectric Point (pI)

64.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	165 - 207	6.3e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	243 - 315	1.2e-09	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	845
Acc65I	GGTACC	1 cut(s)	668
AccB1I	GGYRCC	2 cut(s)	668, 692
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	2 cut(s)	83, 96
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	2 cut(s)	361, 670
AfeI	AGCGCT	1 cut(s)	518
AfiI	CCNNNNNNNGG	3 cut(s)	19, 57, 265
AgsI	TTSAA	9 cut(s)	43, 115, 264, 483, 523, 662, 833, 856, 867
AjnI	CCWGG	2 cut(s)	749, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AluBI	AGCT	6 cut(s)	318, 416, 619, 684, 875, 893
AluI	AGCT	6 cut(s)	318, 416, 619, 684, 875, 893
Alw26I	GTCTC	2 cut(s)	588, 732
AlwI	GGATC	2 cut(s)	83, 96
AlwNI	CAGNNNCTG	1 cut(s)	318
Aor51HI	AGCGCT	1 cut(s)	518
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	5 cut(s)	315, 318, 389, 475, 787
AseI	ATTAAT	2 cut(s)	71, 206
Asp718I	GGTACC	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	379, 703
AsuHPI	GGTGA	2 cut(s)	120, 449
AvaII	GGWCC	2 cut(s)	379, 703
AxyI	CCTNAGG	1 cut(s)	918
BaeGI	GKGCMC	1 cut(s)	695
BamHI	GGATCC	1 cut(s)	88
BanI	GGYRCC	2 cut(s)	668, 692
BbvI	GCAGC	5 cut(s)	305, 327, 401, 487, 774
BccI	CCATC	4 cut(s)	17, 22, 370, 565
BciT130I	CCWGG	2 cut(s)	751, 780
BcoDI	GTCTC	2 cut(s)	588, 732
BfmI	CTRYAG	1 cut(s)	807
BfoI	RGCGCY	1 cut(s)	520
BisI	GCNGC	5 cut(s)	316, 319, 390, 476, 788
BlsI	GCNGC	5 cut(s)	317, 320, 391, 477, 789
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	751, 780
Bme18I	GGWCC	2 cut(s)	379, 703
BmgT120I	GGNCC	2 cut(s)	379, 703
BmiI	GGNNCC	3 cut(s)	90, 670, 694
BmrFI	CCNGG	2 cut(s)	751, 780
BmrI	ACTGGG	2 cut(s)	46, 708
BmuI	ACTGGG	2 cut(s)	46, 708
BpuEI	CTTGAG	1 cut(s)	845
Bsa29I	ATCGAT	2 cut(s)	246, 632
BsaJI	CCNNGG	2 cut(s)	423, 699
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 210, 237, 240
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 57, 265
Bse1I	ACTGG	2 cut(s)	52, 714
Bse21I	CCTNAGG	1 cut(s)	918
BseBI	CCWGG	2 cut(s)	751, 780
BseCI	ATCGAT	2 cut(s)	246, 632
BseDI	CCNNGG	2 cut(s)	423, 699
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	3 cut(s)	19, 57, 265
BseMII	CTCAG	2 cut(s)	556, 932
BseNI	ACTGG	2 cut(s)	52, 714
BseRI	GAGGAG	7 cut(s)	138, 141, 144, 147, 150, 215, 748
BseSI	GKGCMC	1 cut(s)	695
BseXI	GCAGC	5 cut(s)	305, 327, 401, 487, 774
BseYI	CCCAGC	1 cut(s)	893
BsgI	GTGCAG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	2 cut(s)	668, 692
BshVI	ATCGAT	2 cut(s)	246, 632
BslFI	GGGAC	2 cut(s)	181, 539
BslI	CCNNNNNNNGG	3 cut(s)	19, 57, 265
BsmAI	GTCTC	2 cut(s)	588, 732
BsmFI	GGGAC	2 cut(s)	181, 539
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp143I	GATC	7 cut(s)	88, 243, 247, 394, 545, 629, 633
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	2 cut(s)	555, 931
BspDI	ATCGAT	2 cut(s)	246, 632
BspLI	GGNNCC	3 cut(s)	90, 670, 694
BspPI	GGATC	2 cut(s)	83, 96
BspT107I	GGYRCC	2 cut(s)	668, 692
BsrI	ACTGG	2 cut(s)	52, 714
BssECI	CCNNGG	2 cut(s)	423, 699
BssMI	GATC	7 cut(s)	88, 243, 247, 394, 545, 629, 633
BssT1I	CCWWGG	2 cut(s)	423, 699
Bst2UI	CCWGG	2 cut(s)	751, 780
Bst4CI	ACNGT	2 cut(s)	799, 837
Bst6I	CTCTTC	3 cut(s)	38, 273, 657
BstC8I	GCNNGC	3 cut(s)	387, 873, 933
BstDEI	CTNAG	3 cut(s)	459, 542, 918
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	7 cut(s)	91, 246, 250, 397, 548, 632, 636
BstMAI	GTCTC	2 cut(s)	588, 732
BstMBI	GATC	7 cut(s)	88, 243, 247, 394, 545, 629, 633
BstMWI	GCNNNNNNNGC	2 cut(s)	690, 784
BstNI	CCWGG	2 cut(s)	751, 780
BstSCI	CCNGG	2 cut(s)	749, 778
BstSFI	CTRYAG	1 cut(s)	807
BstSLI	GKGCMC	1 cut(s)	695
BstV1I	GCAGC	5 cut(s)	305, 327, 401, 487, 774
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
Bsu15I	ATCGAT	2 cut(s)	246, 632
Bsu36I	CCTNAGG	1 cut(s)	918
BsuRI	GGCC	1 cut(s)	185
BsuTUI	ATCGAT	2 cut(s)	246, 632
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	3 cut(s)	721, 804, 842
Cac8I	GCNNGC	3 cut(s)	387, 873, 933
CaiI	CAGNNNCTG	1 cut(s)	318
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	379, 703
ClaI	ATCGAT	2 cut(s)	246, 632
Csp6I	GTAC	2 cut(s)	360, 669
CviAII	CATG	3 cut(s)	424, 538, 879
CviQI	GTAC	2 cut(s)	360, 669
DdeI	CTNAG	3 cut(s)	459, 542, 918
DpnI	GATC	7 cut(s)	90, 245, 249, 396, 547, 631, 635
DpnII	GATC	7 cut(s)	88, 243, 247, 394, 545, 629, 633
Eam1104I	CTCTTC	3 cut(s)	38, 273, 657
EarI	CTCTTC	3 cut(s)	38, 273, 657
Eco130I	CCWWGG	2 cut(s)	423, 699
Eco47I	GGWCC	2 cut(s)	379, 703
Eco47III	AGCGCT	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	396
Eco81I	CCTNAGG	1 cut(s)	918
EcoO109I	RGGNCCY	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	749, 778
EcoT14I	CCWWGG	2 cut(s)	423, 699
ErhI	CCWWGG	2 cut(s)	423, 699
FaeI	CATG	3 cut(s)	427, 541, 882
FaqI	GGGAC	2 cut(s)	181, 539
FatI	CATG	3 cut(s)	423, 537, 878
FauNDI	CATATG	1 cut(s)	761
Fnu4HI	GCNGC	5 cut(s)	316, 319, 390, 476, 788
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	5 cut(s)	316, 319, 390, 476, 788
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	5 cut(s)	316, 319, 390, 476, 788
GsaI	CCCAGC	1 cut(s)	897
HaeII	RGCGCY	1 cut(s)	520
HaeIII	GGCC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	3 cut(s)	427, 541, 882
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	873
HinfI	GANTC	3 cut(s)	34, 487, 829
HphI	GGTGA	2 cut(s)	120, 449
Hpy166II	GTNNAC	2 cut(s)	795, 802
Hpy188I	TCNGA	2 cut(s)	545, 944
Hpy188III	TCNNGA	2 cut(s)	251, 920
Hpy8I	GTNNAC	2 cut(s)	795, 802
HpyAV	CCTTC	6 cut(s)	270, 420, 464, 489, 504, 647
HpyCH4III	ACNGT	2 cut(s)	799, 837
HpyCH4V	TGCA	6 cut(s)	193, 366, 646, 770, 871, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	690, 784
HpyF3I	CTNAG	3 cut(s)	459, 542, 918
Hsp92II	CATG	3 cut(s)	427, 541, 882
HspAI	GCGC	1 cut(s)	517
KpnI	GGTACC	1 cut(s)	672
Kzo9I	GATC	7 cut(s)	88, 243, 247, 394, 545, 629, 633
LmnI	GCTCC	1 cut(s)	890
Lsp1109I	GCAGC	5 cut(s)	305, 327, 401, 487, 774
MalI	GATC	7 cut(s)	90, 245, 249, 396, 547, 631, 635
MboI	GATC	7 cut(s)	88, 243, 247, 394, 545, 629, 633
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	695
MluCI	AATT	4 cut(s)	68, 79, 289, 549
MmeI	TCCRAC	2 cut(s)	66, 309
MseI	TTAA	4 cut(s)	71, 206, 686, 911
MspA1I	CMGCKG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	751, 780
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	2 cut(s)	751, 780
MwoI	GCNNNNNNNGC	2 cut(s)	690, 784
NcoI	CCATGG	1 cut(s)	423
NdeI	CATATG	1 cut(s)	761
NdeII	GATC	7 cut(s)	88, 243, 247, 394, 545, 629, 633
NlaIII	CATG	3 cut(s)	427, 541, 882
NlaIV	GGNNCC	3 cut(s)	90, 670, 694
PctI	GAATGC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	34, 487, 829
PkrI	GCNGC	5 cut(s)	317, 320, 391, 477, 789
PpuMI	RGGWCCY	1 cut(s)	703
PshBI	ATTAAT	2 cut(s)	71, 206
PsiI	TTATAA	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	703
Psp6I	CCWGG	2 cut(s)	749, 778
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	2 cut(s)	749, 778
PspN4I	GGNNCC	3 cut(s)	90, 670, 694
PspPI	GGNCC	2 cut(s)	379, 703
PspPPI	RGGWCCY	1 cut(s)	703
PstNI	CAGNNNCTG	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	318
RsaI	GTAC	2 cut(s)	361, 670
RsaNI	GTAC	2 cut(s)	360, 669
SaqAI	TTAA	4 cut(s)	71, 206, 686, 911
SatI	GCNGC	5 cut(s)	316, 319, 390, 476, 788
Sau3AI	GATC	7 cut(s)	88, 243, 247, 394, 545, 629, 633
Sau96I	GGNCC	2 cut(s)	379, 703
ScaI	AGTACT	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	751, 780
SduI	GDGCHC	1 cut(s)	695
SfcI	CTRYAG	1 cut(s)	807
SinI	GGWCC	2 cut(s)	379, 703
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	4 cut(s)	68, 79, 289, 549
SsiI	CCGC	1 cut(s)	529
StyD4I	CCNGG	2 cut(s)	749, 778
StyI	CCWWGG	2 cut(s)	423, 699
TaaI	ACNGT	2 cut(s)	799, 837
TaqI	TCGA	3 cut(s)	32, 246, 632
TasI	AATT	4 cut(s)	68, 79, 289, 549
TatI	WGTACW	1 cut(s)	359
TfiI	GAWTC	3 cut(s)	34, 487, 829
Tru1I	TTAA	4 cut(s)	71, 206, 686, 911
Tru9I	TTAA	4 cut(s)	71, 206, 686, 911
TscAI	CASTG	3 cut(s)	721, 804, 842
TseI	GCWGC	5 cut(s)	315, 318, 389, 475, 787
TspDTI	ATGAA	3 cut(s)	291, 626, 867
TspRI	CASTG	3 cut(s)	721, 804, 842
VpaK11BI	GGWCC	2 cut(s)	379, 703
VspI	ATTAAT	2 cut(s)	71, 206
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.