pycom15g30750

Cyclin_C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001536
Physical Location & Seq
Reverse (-)
28705429 .. 28708813
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
ATGGAGGCAACAGATAAAGTCGTTGCTATGGATGACAATTTTATGGATCCACAGTTTTGTGCAACCATTGCTCCTGACATATACAAGCACTTGCGTGAAGCTGAGGAAAATAGAAGGCCCTCCATGGACTTTATGGAAACAATCCAGAAAGACATTAATGCCGGCATGCGTGCTATTCTGATTGATTGGCTAGTAGAGGTTGCTGAAGAGTTCAGGCTTGTACCAGAAACACTATTTCTGACTATCAACTATGTAGACCGTTATCTTTCTGGCAATGTGATGAATAGGAAACAATTGCAGTTGCTGGGTGTTGCCTGCATGATGATTGCAGCTAAATACGAGGAGATTGTTGCTCCCGAGGTGGAACAGTTCTGTTACATCACGGACAACACATACACCAAAGAGGAGGTTTTGCAAATGGAATCCTCTGTCCTGAATCACTTGAAGTTTGAAATGACAGCTCCAACTGCCTTGTGCTTTTTGAGGCGATTTTGTTTTGCTGCTCAAAAGACCAGTGAGGTTCCATCAGAGCATTTCTGGTGCTTGGCCTCCTACATCACAGAGTTGTCTCTTCTAGAATATAGCATGCTTTGTTATGCCCCATCTCTAATAGCTGCTTCTGCTGCCTTCTTGGCAAAGTATATTCTTTCCCCTTTGAAAAAACCTTGGAATTCTACGTTGAGACACTACACATGTTACCAAGCCTCTGATTTGTTTGATTGTGTCAAAGCGCTGCATCAACTGTGTTGTAATGGCTGTGGTTCAAACTTACCTGCAGTTAGGGAGAAGTACTGTCAACATAAGTACAAGTTCATGGCGAAGAAGTACTGTCCCCCATCAATACCTCCAGAGTTCTTCCAGGATTTAAGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

292

Amino Acids

33.52

Weight (kDa)

5.35

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 26 - 153 3.7e-49 Cyclin, N-terminal domain
Cyclin_C PF02984 155 - 274 5e-32 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 781
AccI GTMKAC 1 cut(s) 255
AclWI GGATC 2 cut(s) 41, 54
AcsI RAATTY 1 cut(s) 670
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 4 cut(s) 222, 791, 806, 827
AfeI AGCGCT 1 cut(s) 732
AflIII ACRYGT 1 cut(s) 692
AgsI TTSAA 4 cut(s) 445, 452, 658, 765
AjnI CCWGG 1 cut(s) 858
AleI CACNNNNGTG 1 cut(s) 93
AluBI AGCT 4 cut(s) 101, 332, 461, 614
AluI AGCT 4 cut(s) 101, 332, 461, 614
Alw26I GTCTC 2 cut(s) 573, 676
AlwI GGATC 2 cut(s) 41, 54
AlwNI CAGNNNCTG 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 356
Aor51HI AGCGCT 1 cut(s) 732
AoxI GGCC 2 cut(s) 116, 546
ApeKI GCWGC 5 cut(s) 329, 500, 614, 623, 733
ApoI RAATTY 1 cut(s) 670
AseI ATTAAT 1 cut(s) 156
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 356
BamHI GGATCC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 5 cut(s) 341, 487, 601, 610, 720
BccI CCATC 3 cut(s) 532, 610, 844
BciT130I CCWGG 1 cut(s) 860
BcoDI GTCTC 2 cut(s) 573, 676
BfaI CTAG 3 cut(s) 191, 575, 874
BfmI CTRYAG 1 cut(s) 774
BfoI RGCGCY 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 781
BglI GCCNNNNNGGC 1 cut(s) 632
BisI GCNGC 5 cut(s) 330, 501, 615, 624, 734
BlsI GCNGC 5 cut(s) 331, 502, 616, 625, 735
BmcAI AGTACT 2 cut(s) 791, 827
Bme1390I CCNGG 1 cut(s) 860
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 2 cut(s) 48, 522
BmrFI CCNGG 1 cut(s) 860
BmsI GCATC 1 cut(s) 745
BpmI CTGGAG 1 cut(s) 831
Bpu10I CCTNAGC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 123, 357, 665
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 513
Bse3DI GCAATG 2 cut(s) 66, 280
BseBI CCWGG 1 cut(s) 860
BseDI CCNNGG 3 cut(s) 123, 357, 665
BseGI GGATG 1 cut(s) 37
BseMI GCAATG 2 cut(s) 66, 280
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 513
BseRI GAGGAG 2 cut(s) 356, 419
BseXI GCAGC 5 cut(s) 341, 487, 601, 610, 720
BseYI CCCAGC 1 cut(s) 304
BshFI GGCC 2 cut(s) 118, 548
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 816
BsmAI GTCTC 2 cut(s) 573, 676
BsmFI GGGAC 1 cut(s) 816
BsnI GGCC 2 cut(s) 118, 548
BsoBI CYCGRG 1 cut(s) 356
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 123
BspANI GGCC 2 cut(s) 118, 548
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 48, 522
BspMAI CTGCAG 1 cut(s) 778
BspMI ACCTGC 1 cut(s) 781
BspPI GGATC 2 cut(s) 41, 54
BsrDI GCAATG 2 cut(s) 66, 280
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 1 cut(s) 513
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 3 cut(s) 123, 357, 665
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 2 cut(s) 123, 665
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 6 cut(s) 54, 260, 369, 744, 794, 830
Bst6I CTCTTC 2 cut(s) 201, 576
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 5 cut(s) 163, 167, 171, 316, 587
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 37
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 2 cut(s) 573, 676
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 5 cut(s) 68, 467, 620, 623, 632
BstNI CCWGG 1 cut(s) 860
BstNSI RCATGY 3 cut(s) 169, 589, 696
BstSCI CCNGG 1 cut(s) 858
BstSFI CTRYAG 1 cut(s) 774
BstV1I GCAGC 5 cut(s) 341, 487, 601, 610, 720
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 2 cut(s) 118, 548
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 520
BveI ACCTGC 1 cut(s) 781
Cac8I GCNNGC 5 cut(s) 163, 167, 171, 316, 587
CaiI CAGNNNCTG 1 cut(s) 304
CfoI GCGC 1 cut(s) 733
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 117
Csp6I GTAC 4 cut(s) 221, 790, 805, 826
CviAII CATG 6 cut(s) 124, 166, 319, 586, 693, 814
CviQI GTAC 4 cut(s) 221, 790, 805, 826
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 201, 576
EarI CTCTTC 2 cut(s) 201, 576
Eco130I CCWWGG 2 cut(s) 123, 665
Eco47III AGCGCT 1 cut(s) 732
Eco57I CTGAAG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 670
EcoRII CCWGG 1 cut(s) 858
EcoT14I CCWWGG 2 cut(s) 123, 665
ErhI CCWWGG 2 cut(s) 123, 665
FaeI CATG 6 cut(s) 127, 169, 322, 589, 696, 817
FaqI GGGAC 1 cut(s) 816
FatI CATG 6 cut(s) 123, 165, 318, 585, 692, 813
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 5 cut(s) 330, 501, 615, 624, 734
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 5 cut(s) 330, 501, 615, 624, 734
FspBI CTAG 3 cut(s) 191, 575, 874
GlaI GCGC 1 cut(s) 732
GluI GCNGC 5 cut(s) 330, 501, 615, 624, 734
GsaI CCCAGC 1 cut(s) 308
GsuI CTGGAG 1 cut(s) 831
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 2 cut(s) 118, 548
HapII CCGG 1 cut(s) 162
HhaI GCGC 1 cut(s) 733
Hin1II CATG 6 cut(s) 127, 169, 322, 589, 696, 817
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 1 cut(s) 797
HindII GTYRAC 1 cut(s) 797
HinfI GANTC 2 cut(s) 422, 436
HpaII CCGG 1 cut(s) 162
Hpy166II GTNNAC 2 cut(s) 256, 797
Hpy188I TCNGA 4 cut(s) 180, 240, 529, 709
Hpy188III TCNNGA 6 cut(s) 74, 145, 356, 433, 575, 848
Hpy8I GTNNAC 2 cut(s) 256, 797
HpyAV CCTTC 2 cut(s) 108, 637
HpyCH4III ACNGT 6 cut(s) 54, 260, 369, 744, 794, 830
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 7 cut(s) 62, 298, 318, 329, 415, 736, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 467, 620, 623, 632
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 6 cut(s) 127, 169, 322, 589, 696, 817
HspAI GCGC 1 cut(s) 731
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 3 cut(s) 76, 358, 466
Lsp1109I GCAGC 5 cut(s) 341, 487, 601, 610, 720
LweI GCATC 1 cut(s) 745
MaeI CTAG 3 cut(s) 191, 575, 874
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 2 cut(s) 374, 695
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 4 cut(s) 218, 563, 832, 847
MfeI CAATTG 1 cut(s) 293
MflI RGATCY 1 cut(s) 46
MluCI AATT 3 cut(s) 37, 293, 670
MmeI TCCRAC 1 cut(s) 488
MroNI GCCGGC 1 cut(s) 161
MseI TTAA 2 cut(s) 156, 866
MslI CAYNNNNRTG 1 cut(s) 93
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 860
MunI CAATTG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 860
MwoI GCNNNNNNNGC 5 cut(s) 68, 467, 620, 623, 632
NaeI GCCGGC 1 cut(s) 163
NcoI CCATGG 1 cut(s) 123
NdeII GATC 1 cut(s) 46
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 6 cut(s) 127, 169, 322, 589, 696, 817
NlaIV GGNNCC 2 cut(s) 48, 522
NspI RCATGY 3 cut(s) 169, 589, 696
OliI CACNNNNGTG 1 cut(s) 93
PaeI GCATGC 2 cut(s) 169, 589
PciI ACATGT 1 cut(s) 692
PdiI GCCGGC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 422, 436
PfoI TCCNGGA 1 cut(s) 858
PkrI GCNGC 5 cut(s) 331, 502, 616, 625, 735
PscI ACATGT 1 cut(s) 692
PshBI ATTAAT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 858
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 2 cut(s) 48, 522
PspPI GGNCC 1 cut(s) 117
PstI CTGCAG 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 4 cut(s) 222, 791, 806, 827
RsaNI GTAC 4 cut(s) 221, 790, 805, 826
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 2 cut(s) 156, 866
SatI GCNGC 5 cut(s) 330, 501, 615, 624, 734
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 117
ScaI AGTACT 2 cut(s) 791, 827
ScrFI CCNGG 1 cut(s) 860
SfaNI GCATC 1 cut(s) 745
SfcI CTRYAG 1 cut(s) 774
SmiMI CAYNNNNRTG 1 cut(s) 93
SphI GCATGC 2 cut(s) 169, 589
Sse9I AATT 3 cut(s) 37, 293, 670
SspMI CTAG 3 cut(s) 191, 575, 874
StyD4I CCNGG 1 cut(s) 858
StyI CCWWGG 2 cut(s) 123, 665
TaaI ACNGT 6 cut(s) 54, 260, 369, 744, 794, 830
TaiI ACGT 1 cut(s) 680
TasI AATT 3 cut(s) 37, 293, 670
TatI WGTACW 3 cut(s) 789, 804, 825
TfiI GAWTC 2 cut(s) 422, 436
Tru1I TTAA 2 cut(s) 156, 866
Tru9I TTAA 2 cut(s) 156, 866
TscAI CASTG 1 cut(s) 520
TseI GCWGC 5 cut(s) 329, 500, 614, 623, 733
TspDTI ATGAA 2 cut(s) 296, 802
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 520
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 1 cut(s) 670
XbaI TCTAGA 1 cut(s) 574
XceI RCATGY 3 cut(s) 169, 589, 696
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 3 cut(s) 191, 575, 874
ZrmI AGTACT 2 cut(s) 791, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.