Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Reverse (-)

37619272 .. 37623436

Gene Structure 4165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGACTCGGTCCGGACCATGAAGCTATACAACAGAATCAAGGAAGTGGTGGCTTTAGTGGATTGTCCTAAGAGATTTACTCTAAAAGATATGATAAAACCTGAGACGGATCGGACTGAATATTTTGTCAGTGCACTTCTCAATTTCTCTCTTCACAGAGAGACCAAAATGAATATCCTTACCCAAGTCGTGGATCAATTAACTGACATAGATGAGCAACGCAAAGGGTGGGAGGACAAGCTTTCCCAGTTGAATGCAGAGATTGCAGACTACAATGAAGCAAGAGAAAAGGAGTTGCCTCTTGTTCAAGAGGTAGATGCAAAAGTTAAAGAATTGCACCAAACTGTTTCAGGCCTTAACAATCAGCAAAAGTCACTGAGAACTTCTCGTCAGAAGTTGAAGGAGAAGATTGGAGAAATAGAGGAAAAGGTTTCTAGTGCAGAGTTTTCTTTGGTACAAAGTGTTCAAGAAAATGCAAATTTGCGCTCAAAAATTGTTCAGTCACCAGATAAATTGCAGAGGGCTTTAGAAGAGAAGAAATCAGTTCGTGAGGAGGCGAAAAATGCTGAAAGGTCAGCGAAGCAGTCTTTGGAGGAGAAGACCGCCGTTGATGAGGTTTATACAAAGGTCTCTAAGAAATTGTCAAAACACTTGGCCCAAATGCAGGCTATACAAGAACAGGTTAATTCTGCTAAATCAGTCGACAGAGACTTTAAGGCTATAAAGGCCAAACTAAGTGACGATGGGGTTGTAAGCAAGTCTCTTCAGGCCAAACTGGTTGAACGGGAGGGAAAAGTGGAACAGTTGAATGAATTAAAAAAGCAGCTAGAAAGGGAAAAAGATATGAAGTTCGAGGAGGCTTCTAAAGATTTGAATAACGTGGAGCTGGAGGTGGAATCTAGGAGGCGTGATCTAGAAGCAAGGCAAAAAGCTGTTGAAGCTGCAGTCGAAGAGGTGGATTCTATCACTTCAAAGACAGCATCAATAAAAGAATCTGGAGCAGCTGATCAGAAAGAATTAGCTCGTAAATGCAAGGAGCTTATGAAAGAGTTCCACCAGTACCAGAACTCAATCAGGGTCCTGCTGATGGAGAGCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

367

Amino Acids

42.07

Weight (kDa)

6.96

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	2 - 66	1.9e-11	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	702
AccIII	TCCGGA	1 cut(s)	12
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	2 cut(s)	117, 201
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	749
AfaI	GTAC	2 cut(s)	456, 1061
AfiI	CCNNNNNNNGG	3 cut(s)	190, 664, 1087
AgsI	TTSAA	9 cut(s)	253, 308, 400, 467, 782, 808, 874, 938, 972
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	9 cut(s)	25, 241, 826, 886, 932, 941, 1004, 1022, 1039
AluI	AGCT	9 cut(s)	25, 241, 826, 886, 932, 941, 1004, 1022, 1039
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	5 cut(s)	98, 155, 634, 702, 765
Alw44I	GTGCAC	1 cut(s)	132
AlwI	GGATC	2 cut(s)	117, 201
Aor13HI	TCCGGA	1 cut(s)	12
AoxI	GGCC	4 cut(s)	352, 654, 726, 768
ApaLI	GTGCAC	1 cut(s)	132
ApeKI	GCWGC	3 cut(s)	823, 941, 1001
ApoI	RAATTY	1 cut(s)	478
Asp700I	GAANNNNTTC	1 cut(s)	1049
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	4 cut(s)	10, 15, 655, 1078
AsuHPI	GGTGA	1 cut(s)	495
AvaII	GGWCC	3 cut(s)	10, 15, 1078
BaeGI	GKGCMC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	835, 928, 1013
BccI	CCATC	2 cut(s)	737, 1081
BceAI	ACGGC	1 cut(s)	590
BclI	TGATCA	1 cut(s)	1006
BcoDI	GTCTC	5 cut(s)	98, 155, 634, 702, 765
BfaI	CTAG	4 cut(s)	435, 827, 900, 914
BfmI	CTRYAG	1 cut(s)	942
BisI	GCNGC	3 cut(s)	824, 942, 1002
BlsI	GCNGC	3 cut(s)	825, 943, 1003
Bme18I	GGWCC	3 cut(s)	10, 15, 1078
BmgT120I	GGNCC	4 cut(s)	10, 15, 655, 1078
BmiI	GGNNCC	1 cut(s)	1079
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	2 cut(s)	307, 989
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	605
BplI	GAGNNNNNCTC	4 cut(s)	64, 96, 370, 402
BpmI	CTGGAG	2 cut(s)	908, 1017
BsaI	GGTCTC	2 cut(s)	155, 634
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 664, 1087
Bse1I	ACTGG	3 cut(s)	247, 780, 1057
BseAI	TCCGGA	1 cut(s)	12
BseLI	CCNNNNNNNGG	3 cut(s)	190, 664, 1087
BseMII	CTCAG	2 cut(s)	93, 368
BseNI	ACTGG	3 cut(s)	247, 780, 1057
BseRI	GAGGAG	3 cut(s)	566, 608, 869
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	835, 928, 1013
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	4 cut(s)	354, 656, 728, 770
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	3 cut(s)	190, 664, 1087
BsmAI	GTCTC	5 cut(s)	98, 155, 634, 702, 765
BsmBI	CGTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	4 cut(s)	354, 656, 728, 770
Bso31I	GGTCTC	2 cut(s)	155, 634
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp13I	TCCGGA	1 cut(s)	12
Bsp143I	GATC	4 cut(s)	109, 193, 910, 1006
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	4 cut(s)	354, 656, 728, 770
BspCNI	CTCAG	2 cut(s)	94, 369
BspEI	TCCGGA	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	1079
BspMAI	CTGCAG	1 cut(s)	946
BspPI	GGATC	2 cut(s)	117, 201
BspTNI	GGTCTC	2 cut(s)	155, 634
BsrI	ACTGG	3 cut(s)	247, 780, 1057
BssMI	GATC	4 cut(s)	109, 193, 910, 1006
Bst4CI	ACNGT	2 cut(s)	346, 804
Bst6I	CTCTTC	4 cut(s)	156, 525, 768, 945
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	5 cut(s)	69, 102, 377, 633, 734
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	4 cut(s)	112, 196, 913, 1009
BstMAI	GTCTC	5 cut(s)	98, 155, 634, 702, 765
BstMBI	GATC	4 cut(s)	109, 193, 910, 1006
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 563, 725, 938
BstSFI	CTRYAG	1 cut(s)	942
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	3 cut(s)	835, 928, 1013
BstV2I	GAAGAC	1 cut(s)	605
BsuRI	GGCC	4 cut(s)	354, 656, 728, 770
BtsIMutI	CAGTG	2 cut(s)	136, 374
Cac8I	GCNNGC	1 cut(s)	666
CfoI	GCGC	1 cut(s)	486
Cfr13I	GGNCC	4 cut(s)	10, 15, 655, 1078
CpoI	CGGWCCG	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	455, 1060
CspI	CGGWCCG	1 cut(s)	10
CviAII	CATG	1 cut(s)	19
CviQI	GTAC	2 cut(s)	455, 1060
DdeI	CTNAG	5 cut(s)	69, 102, 377, 633, 734
DpnI	GATC	4 cut(s)	111, 195, 912, 1008
DpnII	GATC	4 cut(s)	109, 193, 910, 1006
Eam1104I	CTCTTC	4 cut(s)	156, 525, 768, 945
EarI	CTCTTC	4 cut(s)	156, 525, 768, 945
Eco147I	AGGCCT	1 cut(s)	354
Eco31I	GGTCTC	2 cut(s)	155, 634
Eco47I	GGWCC	3 cut(s)	10, 15, 1078
Eco57I	CTGAAG	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	1078
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	22
FaiI	YATR	9 cut(s)	20, 28, 92, 209, 621, 671, 722, 845, 1043
FatI	CATG	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	1006
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	3 cut(s)	824, 942, 1002
Fsp4HI	GCNGC	3 cut(s)	824, 942, 1002
FspBI	CTAG	4 cut(s)	435, 827, 900, 914
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	3 cut(s)	824, 942, 1002
GsuI	CTGGAG	2 cut(s)	908, 1017
HaeIII	GGCC	4 cut(s)	354, 656, 728, 770
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	5 cut(s)	5, 36, 896, 959, 992
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	2 cut(s)	134, 703
Hpy188I	TCNGA	3 cut(s)	114, 393, 1011
Hpy188III	TCNNGA	6 cut(s)	13, 308, 467, 548, 914, 996
Hpy8I	GTNNAC	2 cut(s)	134, 703
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	346, 804
HpyCH4IV	ACGT	1 cut(s)	879
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 563, 725, 938
HpyF3I	CTNAG	5 cut(s)	69, 102, 377, 633, 734
HpySE526I	ACGT	1 cut(s)	879
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	484
Kpn2I	TCCGGA	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	1006
Kzo9I	GATC	4 cut(s)	109, 193, 910, 1006
LmnI	GCTCC	3 cut(s)	883, 998, 1036
Lsp1109I	GCAGC	3 cut(s)	835, 928, 1013
LweI	GCATC	2 cut(s)	307, 989
MaeI	CTAG	4 cut(s)	435, 827, 900, 914
MaeII	ACGT	1 cut(s)	879
MaeIII	GTNAC	3 cut(s)	372, 501, 737
MalI	GATC	4 cut(s)	111, 195, 912, 1008
MboI	GATC	4 cut(s)	109, 193, 910, 1006
MboII	GAAGA	7 cut(s)	143, 418, 542, 547, 610, 755, 962
MhlI	GDGCHC	1 cut(s)	136
MroI	TCCGGA	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	1049
MseI	TTAA	6 cut(s)	200, 327, 357, 684, 714, 815
MspA1I	CMGCKG	1 cut(s)	1004
MspI	CCGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	4 cut(s)	263, 563, 725, 938
NdeII	GATC	4 cut(s)	109, 193, 910, 1006
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	1079
NmuCI	GTSAC	3 cut(s)	372, 501, 737
PceI	AGGCCT	1 cut(s)	354
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	1049
PfeI	GAWTC	4 cut(s)	36, 896, 959, 992
PflFI	GACNNNGTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	825, 943, 1003
PpuMI	RGGWCCY	1 cut(s)	1078
Psp5II	RGGWCCY	1 cut(s)	1078
PspN4I	GGNNCC	1 cut(s)	1079
PspPI	GGNCC	4 cut(s)	10, 15, 655, 1078
PspPPI	RGGWCCY	1 cut(s)	1078
PsrI	GAACNNNNNNTAC	2 cut(s)	447, 479
PstI	CTGCAG	1 cut(s)	946
PsyI	GACNNNGTC	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	1004
RsaI	GTAC	2 cut(s)	456, 1061
RsaNI	GTAC	2 cut(s)	455, 1060
Rsr2I	CGGWCCG	1 cut(s)	10
RsrII	CGGWCCG	1 cut(s)	10
SalI	GTCGAC	1 cut(s)	701
SaqAI	TTAA	6 cut(s)	200, 327, 357, 684, 714, 815
SatI	GCNGC	3 cut(s)	824, 942, 1002
Sau3AI	GATC	4 cut(s)	109, 193, 910, 1006
Sau96I	GGNCC	4 cut(s)	10, 15, 655, 1078
SduI	GDGCHC	1 cut(s)	136
SfaNI	GCATC	2 cut(s)	307, 989
SfcI	CTRYAG	1 cut(s)	942
SinI	GGWCC	3 cut(s)	10, 15, 1078
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	603
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	4 cut(s)	435, 827, 900, 914
StuI	AGGCCT	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	346, 804
TaiI	ACGT	1 cut(s)	882
TaqI	TCGA	3 cut(s)	702, 852, 948
TfiI	GAWTC	4 cut(s)	36, 896, 959, 992
Tru1I	TTAA	6 cut(s)	200, 327, 357, 684, 714, 815
Tru9I	TTAA	6 cut(s)	200, 327, 357, 684, 714, 815
TscAI	CASTG	2 cut(s)	136, 381
TseFI	GTSAC	3 cut(s)	372, 501, 737
TseI	GCWGC	3 cut(s)	823, 941, 1001
Tsp45I	GTSAC	3 cut(s)	372, 501, 737
TspDTI	ATGAA	6 cut(s)	35, 185, 291, 825, 860, 1058
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	136, 381
Tth111I	GACNNNGTC	1 cut(s)	8
Van91I	CCANNNNNTGG	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	132
VpaK11BI	GGWCC	3 cut(s)	10, 15, 1078
XapI	RAATTY	1 cut(s)	478
XbaI	TCTAGA	1 cut(s)	913
XmiI	GTMKAC	1 cut(s)	702
XmnI	GAANNNNTTC	1 cut(s)	1049
XspI	CTAG	4 cut(s)	435, 827, 900, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.