pycom16g11090
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0006660
Physical Location & Seq
Reverse (-)
7669693 .. 7671936
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1038 bp
ATGGTCATGGCCTCGGTGCAGCAGGTAACCCTGATCCCCGTTGACGGCGACAGTAACGGCGTTGACGCCCGCAACCCCACGTCAGCCGACACCGGTGTTGATGACTCCAGCAAGGCGCCGAGGCTGCCACGCTGGACGCGGCAGGAGATTCTCGTGCTGATAAACGGTAAGCGGTACGCGGAGGGCCGGGGCGGGGTGCGGGCACCGAGGTCGGACTTCGGGTCGGGTCAGTTGGAGCCCAAATGGGCGGCGGTGTCGAACTATTGCAAGAAGCACGGGGTGAACCGGGAGCCGGTCCAGTGCCGGAAGCGGTGGAGCAATTTGGCGGGGGACTTCAAGAAGATAAGGGAGTGGGAGGCGCAGAGGAAGGACGAAACGGAGTCGTATTGGGTGATGAGGAACGACCTGAGGAGAGAGAGGAAGCTGCCGGGGTTTTTCGATAAGGAAGTTTACGATATAATGGAGGCGGTTCCAGGTACTCCGGTTACGCTGGCTTTGCCGGGTCCGAACCGGGTGGAGTCCGAGGAGGTGAAGGAGGAGGGGACGGCGGAGGAGGCTGAGAACTTGTTCGATAGTATACAGAGGCCGACTGAGGAGGGGTTGTTTTCGGATGACGAGTCTGGTCGGAGCCCCGAAAAGGAAGTCCGGTTCAAGGAGGGTCCGGGAATTTCAGCTCCCTTGCCAATATCAGAGAAGGTGTACAAACCAACACCACAAGGACATCAAGAACCTCAAGCACATCAAGGACAAGGTGCAGCAGGCCCAAAACAGCCAGCTTCGATCCCAGAGGTTGGATCTACCTCTCAAGACCGGAAGCGGAAGCGTTTTGCAATGGAAGGAGACGAGGAAGGATCCACTCTGGAGAACCAGTTGATTGATGTCATGGAAAGGAACGGCAAAATGCTGGCTGACTACCTCCATGCTCAAAACTCCCATTCTCAACTCGACCGGGAGCAGAGGAAAGAGCATTCCGACAACTTGGTTGCCGTTCTTAACAAGCTTGCAGATGCATTCATGCGAATCGCTGAGAAATTGTAG

Protein Analysis

346

Amino Acids

38.68

Weight (kDa)

5.62

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 44 - 132 5.7e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 2 cut(s) 115, 202
AccB7I CCANNNNNTGG 1 cut(s) 791
AccI GTMKAC 1 cut(s) 577
AccII CGCG 2 cut(s) 139, 179
AclWI GGATC 5 cut(s) 28, 775, 802, 846, 859
AcsI RAATTY 1 cut(s) 666
AcyI GRCGYC 2 cut(s) 66, 116
AdeI CACNNNGTG 1 cut(s) 280
AfaI GTAC 3 cut(s) 176, 478, 701
AfiI CCNNNNNNNGG 6 cut(s) 44, 193, 292, 637, 652, 791
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 2 cut(s) 337, 652
AhdI GACNNNNNGTC 1 cut(s) 220
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 1 cut(s) 472
AloI GAACNNNNNNTCC 2 cut(s) 632, 664
AluBI AGCT 4 cut(s) 424, 674, 776, 1000
AluI AGCT 4 cut(s) 424, 674, 776, 1000
Alw26I GTCTC 1 cut(s) 834
AlwI GGATC 5 cut(s) 28, 775, 802, 846, 859
AoxI GGCC 4 cut(s) 9, 184, 584, 760
ApeKI GCWGC 4 cut(s) 19, 124, 424, 755
ApoI RAATTY 1 cut(s) 666
ArsI GACNNNNNNTTYG 2 cut(s) 627, 659
AsiGI ACCGGT 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 566
AspLEI GCGC 2 cut(s) 118, 361
AspS9I GGNCC 5 cut(s) 184, 295, 503, 659, 761
AsuC2I CCSGG 7 cut(s) 188, 287, 429, 501, 512, 663, 950
AsuHPI GGTGA 3 cut(s) 292, 403, 541
AvaII GGWCC 3 cut(s) 295, 503, 659
AxyI CCTNAGG 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 205
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BamHI GGATCC 1 cut(s) 851
BanI GGYRCC 2 cut(s) 115, 202
BanII GRGCYC 2 cut(s) 240, 632
BauI CACGAG 1 cut(s) 152
BbvI GCAGC 4 cut(s) 31, 111, 411, 767
BceAI ACGGC 5 cut(s) 61, 73, 561, 910, 971
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BciT130I CCWGG 1 cut(s) 474
BcnI CCSGG 7 cut(s) 188, 287, 429, 501, 512, 663, 950
BcoDI GTCTC 1 cut(s) 834
BfoI RGCGCY 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 6 cut(s) 20, 125, 140, 249, 425, 756
BlsI GCNGC 6 cut(s) 21, 126, 141, 250, 426, 757
Bme1390I CCNGG 8 cut(s) 188, 287, 429, 474, 501, 512, 663, 950
Bme18I GGWCC 3 cut(s) 295, 503, 659
BmeRI GACNNNNNGTC 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 5 cut(s) 184, 295, 503, 659, 761
BmiI GGNNCC 9 cut(s) 117, 204, 237, 291, 471, 504, 629, 660, 853
BmrFI CCNGG 8 cut(s) 188, 287, 429, 474, 501, 512, 663, 950
BmsI GCATC 1 cut(s) 997
BpmI CTGGAG 2 cut(s) 91, 881
BpuEI CTTGAG 2 cut(s) 717, 789
BpuMI CCSGG 7 cut(s) 188, 287, 429, 501, 512, 663, 950
BsaHI GRCGYC 2 cut(s) 66, 116
BsaJI CCNNGG 6 cut(s) 12, 119, 187, 206, 428, 522
BsaWI WCCGGW 4 cut(s) 92, 481, 645, 810
BsaXI ACNNNNNCTCC 4 cut(s) 587, 617, 854, 884
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 193, 292, 637, 652, 791
Bse118I RCCGGY 2 cut(s) 92, 292
Bse1I ACTGG 2 cut(s) 298, 868
Bse21I CCTNAGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 837
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 6 cut(s) 12, 119, 187, 206, 428, 522
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 6 cut(s) 44, 193, 292, 637, 652, 791
BseMI GCAATG 1 cut(s) 837
BseMII CTCAG 4 cut(s) 398, 549, 582, 1017
BseNI ACTGG 2 cut(s) 298, 868
BseRI GAGGAG 5 cut(s) 424, 539, 551, 566, 608
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 4 cut(s) 31, 111, 411, 767
BsgI GTGCAG 2 cut(s) 38, 774
Bsh1236I CGCG 2 cut(s) 139, 179
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 4 cut(s) 11, 186, 586, 762
BshNI GGYRCC 2 cut(s) 115, 202
BshTI ACCGGT 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 949
BslFI GGGAC 2 cut(s) 344, 556
BslI CCNNNNNNNGG 6 cut(s) 44, 193, 292, 637, 652, 791
BsmAI GTCTC 1 cut(s) 834
BsmBI CGTCTC 1 cut(s) 834
BsmFI GGGAC 2 cut(s) 344, 556
BsmI GAATGC 2 cut(s) 967, 1010
BsnI GGCC 4 cut(s) 11, 186, 586, 762
Bsp1286I GDGCHC 3 cut(s) 205, 240, 632
Bsp1407I TGTACA 1 cut(s) 699
Bsp143I GATC 4 cut(s) 33, 780, 794, 851
BspANI GGCC 4 cut(s) 11, 186, 586, 762
BspCNI CTCAG 4 cut(s) 399, 550, 583, 1018
BspFNI CGCG 2 cut(s) 139, 179
BspLI GGNNCC 9 cut(s) 117, 204, 237, 291, 471, 504, 629, 660, 853
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 5 cut(s) 28, 775, 802, 846, 859
BspT107I GGYRCC 2 cut(s) 115, 202
BsrDI GCAATG 1 cut(s) 837
BsrFI RCCGGY 2 cut(s) 92, 292
BsrGI TGTACA 1 cut(s) 699
BsrI ACTGG 2 cut(s) 298, 868
BssAI RCCGGY 2 cut(s) 92, 292
BssECI CCNNGG 6 cut(s) 12, 119, 187, 206, 428, 522
BssMI GATC 4 cut(s) 33, 780, 794, 851
BssNAI GTATAC 1 cut(s) 578
BssNI GRCGYC 2 cut(s) 66, 116
BssSI CACGAG 1 cut(s) 152
Bst1107I GTATAC 1 cut(s) 578
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 53, 167
BstACI GRCGYC 2 cut(s) 66, 116
BstAUI TGTACA 1 cut(s) 699
BstC8I GCNNGC 7 cut(s) 70, 201, 492, 760, 774, 906, 1002
BstDEI CTNAG 4 cut(s) 407, 558, 591, 1026
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 1 cut(s) 616
BstFNI CGCG 2 cut(s) 139, 179
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 2 cut(s) 118, 361
BstKTI GATC 4 cut(s) 36, 783, 797, 854
BstMAI GTCTC 1 cut(s) 834
BstMBI GATC 4 cut(s) 33, 780, 794, 851
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 3 cut(s) 124, 496, 554
BstNI CCWGG 1 cut(s) 474
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 8 cut(s) 186, 285, 427, 472, 499, 510, 661, 948
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 2 cut(s) 139, 179
BstV1I GCAGC 4 cut(s) 31, 111, 411, 767
BstX2I RGATCY 2 cut(s) 794, 851
BstYI RGATCY 2 cut(s) 794, 851
BstZ17I GTATAC 1 cut(s) 578
Bsu36I CCTNAGG 1 cut(s) 407
BsuRI GGCC 4 cut(s) 11, 186, 586, 762
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 305
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 7 cut(s) 70, 201, 492, 760, 774, 906, 1002
CfoI GCGC 2 cut(s) 118, 361
Cfr10I RCCGGY 2 cut(s) 92, 292
Cfr13I GGNCC 5 cut(s) 184, 295, 503, 659, 761
CseI GACGC 2 cut(s) 74, 145
Csp6I GTAC 3 cut(s) 175, 477, 700
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 4 cut(s) 7, 883, 920, 1015
CviQI GTAC 3 cut(s) 175, 477, 700
DdeI CTNAG 4 cut(s) 407, 558, 591, 1026
DinI GGCGCC 1 cut(s) 117
DpnI GATC 4 cut(s) 35, 782, 796, 853
DpnII GATC 4 cut(s) 33, 780, 794, 851
DraIII CACNNNGTG 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 220
Eam1105I GACNNNNNGTC 1 cut(s) 220
EciI GGCGGA 1 cut(s) 563
Eco24I GRGCYC 2 cut(s) 240, 632
Eco47I GGWCC 3 cut(s) 295, 503, 659
Eco81I CCTNAGG 1 cut(s) 407
Eco91I GGTNACC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 1012
EcoT38I GRGCYC 2 cut(s) 240, 632
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 834
FaeI CATG 4 cut(s) 10, 886, 923, 1018
FaiI YATR 6 cut(s) 8, 458, 578, 884, 921, 1016
FaqI GGGAC 2 cut(s) 344, 556
FatI CATG 4 cut(s) 6, 882, 919, 1014
FauI CCCGC 4 cut(s) 77, 185, 192, 319
FblI GTMKAC 1 cut(s) 577
Fnu4HI GCNGC 6 cut(s) 20, 125, 140, 249, 425, 756
FokI GGATG 1 cut(s) 623
FriOI GRGCYC 2 cut(s) 240, 632
Fsp4HI GCNGC 6 cut(s) 20, 125, 140, 249, 425, 756
GlaI GCGC 2 cut(s) 117, 360
GluI GCNGC 6 cut(s) 20, 125, 140, 249, 425, 756
GsuI CTGGAG 2 cut(s) 91, 881
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 4 cut(s) 11, 186, 586, 762
HgaI GACGC 2 cut(s) 74, 145
HhaI GCGC 2 cut(s) 118, 361
Hin1I GRCGYC 2 cut(s) 66, 116
Hin1II CATG 4 cut(s) 10, 886, 923, 1018
Hin6I GCGC 2 cut(s) 116, 359
HinP1I GCGC 2 cut(s) 116, 359
HincII GTYRAC 2 cut(s) 43, 64
HindII GTYRAC 2 cut(s) 43, 64
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 6 cut(s) 104, 148, 380, 518, 617, 1020
HphI GGTGA 3 cut(s) 292, 403, 541
Hpy166II GTNNAC 6 cut(s) 43, 64, 283, 451, 578, 700
Hpy188I TCNGA 7 cut(s) 214, 507, 523, 610, 627, 691, 973
Hpy188III TCNNGA 4 cut(s) 337, 725, 806, 860
Hpy8I GTNNAC 6 cut(s) 43, 64, 283, 451, 578, 700
HpyAV CCTTC 5 cut(s) 361, 526, 688, 830, 842
HpyCH4III ACNGT 2 cut(s) 53, 167
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 6 cut(s) 19, 267, 755, 830, 1004, 1010
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 496, 554
HpyF3I CTNAG 4 cut(s) 407, 558, 591, 1026
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 2 cut(s) 66, 116
Hsp92II CATG 4 cut(s) 10, 886, 923, 1018
HspAI GCGC 2 cut(s) 116, 359
KasI GGCGCC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 33, 780, 794, 851
LmnI GCTCC 6 cut(s) 235, 289, 315, 627, 679, 952
Lsp1109I GCAGC 4 cut(s) 31, 111, 411, 767
LweI GCATC 1 cut(s) 997
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 3 cut(s) 25, 53, 484
MalI GATC 4 cut(s) 35, 782, 796, 853
MboI GATC 4 cut(s) 33, 780, 794, 851
MboII GAAGA 1 cut(s) 352
MflI RGATCY 2 cut(s) 794, 851
MhlI GDGCHC 3 cut(s) 205, 240, 632
MluCI AATT 3 cut(s) 319, 666, 1031
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 4 cut(s) 98, 389, 527, 626
MmeI TCCRAC 5 cut(s) 192, 213, 605, 772, 996
Mph1103I ATGCAT 1 cut(s) 1012
MroXI GAANNNNTTC 1 cut(s) 566
MseI TTAA 1 cut(s) 993
MspR9I CCNGG 8 cut(s) 188, 287, 429, 474, 501, 512, 663, 950
Mva1269I GAATGC 2 cut(s) 967, 1010
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 2 cut(s) 139, 179
MwoI GCNNNNNNNGC 3 cut(s) 124, 496, 554
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 7 cut(s) 188, 287, 429, 501, 512, 663, 950
NdeII GATC 4 cut(s) 33, 780, 794, 851
NlaIII CATG 4 cut(s) 10, 886, 923, 1018
NlaIV GGNNCC 9 cut(s) 117, 204, 237, 291, 471, 504, 629, 660, 853
NmeAIII GCCGAG 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 1012
PctI GAATGC 2 cut(s) 967, 1010
PdmI GAANNNNTTC 1 cut(s) 566
PfeI GAWTC 2 cut(s) 148, 1020
PflMI CCANNNNNTGG 1 cut(s) 791
PfoI TCCNGGA 1 cut(s) 661
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 6 cut(s) 21, 126, 141, 250, 426, 757
PleI GAGTC 4 cut(s) 98, 388, 526, 625
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 4 cut(s) 98, 388, 526, 625
Psp6I CCWGG 1 cut(s) 472
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 9 cut(s) 117, 204, 237, 291, 471, 504, 629, 660, 853
PspPI GGNCC 5 cut(s) 184, 295, 503, 659, 761
PsuI RGATCY 2 cut(s) 794, 851
RsaI GTAC 3 cut(s) 176, 478, 701
RsaNI GTAC 3 cut(s) 175, 477, 700
SaqAI TTAA 1 cut(s) 993
SatI GCNGC 6 cut(s) 20, 125, 140, 249, 425, 756
Sau3AI GATC 4 cut(s) 33, 780, 794, 851
Sau96I GGNCC 5 cut(s) 184, 295, 503, 659, 761
SchI GAGTC 4 cut(s) 98, 389, 527, 626
ScrFI CCNGG 8 cut(s) 188, 287, 429, 474, 501, 512, 663, 950
SduI GDGCHC 3 cut(s) 205, 240, 632
SfaNI GCATC 1 cut(s) 997
SfoI GGCGCC 1 cut(s) 117
SgrAI CRCCGGYG 1 cut(s) 92
SinI GGWCC 3 cut(s) 295, 503, 659
SmlI CTYRAG 2 cut(s) 732, 804
SmoI CTYRAG 2 cut(s) 732, 804
Sse9I AATT 3 cut(s) 319, 666, 1031
SspDI GGCGCC 1 cut(s) 115
StyD4I CCNGG 8 cut(s) 186, 285, 427, 472, 499, 510, 661, 948
TaaI ACNGT 2 cut(s) 53, 167
TaiI ACGT 1 cut(s) 83
TaqI TCGA 5 cut(s) 257, 438, 570, 779, 945
TasI AATT 3 cut(s) 319, 666, 1031
TatI WGTACW 1 cut(s) 699
TauI GCSGC 2 cut(s) 142, 251
TfiI GAWTC 2 cut(s) 148, 1020
Tru1I TTAA 1 cut(s) 993
Tru9I TTAA 1 cut(s) 993
TscAI CASTG 1 cut(s) 305
TseI GCWGC 4 cut(s) 19, 124, 424, 755
TspDTI ATGAA 1 cut(s) 1003
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 791
VpaK11BI GGWCC 3 cut(s) 295, 503, 659
XapI RAATTY 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 577
XmnI GAANNNNTTC 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.