Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006316

Physical Location & Seq

Genomic Coordinates Reverse (-)

9068271 .. 9069823

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAAGGCTATGGAGGAAGTTGTGGAGGAAAACGAAGTTAAGCCCTTGACTGCCAAGCAATTGGAGCTGTACGAGTCGCAATCCGAGTCCGAGTCCGAGTCCGAGGACAGCGTAGGCGAGGAGGAGGAGGACGCCGACGAGGATGACGACGACGACGACGACGCGGATGAGGACGAAGACGACGACGATGAGGACGAAGAGGACGACGACGACGATGTTCACGAGGTCGTACAGTCGTCTGGTGGCCCTCCGGTTCACGCGGTGGACGACGAAGACGACGATGACGAGGACGAGGACGACGAAGGCGGTGACGACGATGACGATGGCGAGGGAGATGACGACGACGACGACGACGATGACGAGGCTGAGGAAGAGGAAGAGCTAGGAACTGAGTACCTCGTCCGCCCAGTAGGTCGTGCTGAGGATGAGGAAGATGCGAGCGATTTTGAGCCCGAAGAGAATGGAGTTGATGAAGATGAAGAGCAGGGCGATGATGCTGGTGGGAAGGTGGAGGCTCCCCCAAAGAGAAAGAGATCGGACAAAGATGACTCAGATGACGACGACGACGATGGTGATGGAGGAGAGGACGATGAGAGACCCTCCAAACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.54

Weight (kDa)

4.05

Isoelectric Point (pI)

73.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47970
fragaria_vesca	FvH4_4g20460
malus_domestica	MD13G1149500.v1.1 MD16G1149800.v1.1
prunus_persica	Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1
pyrus_communis	pycom13g12870 pycom16g12830
rosa_chinensis	RchiOBHm_Chr4g0425941
rosa_laevigata	RLG00000004628 RLG00000007330 RLG00000015867 RLG00000027658
rosa_roxburghii	Rroxscaffold_5G00367950
rosa_rugosa	Rorug04G0207200 Rorug04G0207300.1 Rorug04G0207400 Rorug04G0207500
rosa_samantha	Rh3DG073600 Rh4AG264400 Rh4BG270300 Rh4CG282900 Rh4DG266800 Rh5BG314700 Rh6DG338900
rosa_wichuraiana	Rw4G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	164, 260
AciI	CCGC	4 cut(s)	164, 260, 306, 403
AcyI	GRCGYC	1 cut(s)	132
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	3 cut(s)	71, 231, 395
AluBI	AGCT	2 cut(s)	67, 382
AluI	AGCT	2 cut(s)	67, 382
Alw26I	GTCTC	1 cut(s)	589
AoxI	GGCC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	320, 584
BanII	GRGCYC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	183, 279
BbvCI	CCTCAGC	2 cut(s)	366, 420
BccI	CCATC	3 cut(s)	317, 563, 569
BcoDI	GTCTC	1 cut(s)	589
BfaI	CTAG	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	516
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	2 cut(s)	424, 484
BmuI	ACTGGG	1 cut(s)	401
BpiI	GAAGAC	2 cut(s)	183, 279
BplI	GAGNNNNNCTC	1 cut(s)	584
Bpu10I	CCTNAGC	2 cut(s)	366, 420
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	3 cut(s)	148, 172, 430
BseMII	CTCAG	4 cut(s)	357, 381, 411, 564
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	4 cut(s)	134, 137, 140, 594
Bsh1236I	CGCG	2 cut(s)	164, 260
BshFI	GGCC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	589
BsnI	GGCC	1 cut(s)	246
Bso31I	GGTCTC	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	533
BspACI	CCGC	4 cut(s)	164, 260, 306, 403
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	4 cut(s)	358, 382, 412, 563
BspFNI	CGCG	2 cut(s)	164, 260
BspLI	GGNNCC	1 cut(s)	516
BspQI	GCTCTTC	2 cut(s)	372, 474
BspTNI	GGTCTC	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	533
BssNI	GRCGYC	1 cut(s)	132
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	5 cut(s)	192, 366, 372, 450, 474
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	4 cut(s)	366, 390, 420, 550
BstF5I	GGATG	3 cut(s)	148, 172, 430
BstFNI	CGCG	2 cut(s)	164, 260
BstKTI	GATC	1 cut(s)	536
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	1 cut(s)	533
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstUI	CGCG	2 cut(s)	164, 260
BstV2I	GAAGAC	2 cut(s)	183, 279
BstXI	CCANNNNNNTGG	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	504
BtsCI	GGATG	3 cut(s)	148, 172, 430
Cac8I	GCNNGC	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	2 cut(s)	140, 170
Csp6I	GTAC	3 cut(s)	70, 230, 394
CviJI	RGCY	8 cut(s)	8, 43, 67, 246, 365, 382, 451, 515
CviKI_1	RGCY	8 cut(s)	8, 43, 67, 246, 365, 382, 451, 515
CviQI	GTAC	3 cut(s)	70, 230, 394
DdeI	CTNAG	4 cut(s)	366, 390, 420, 550
DpnI	GATC	1 cut(s)	535
DpnII	GATC	1 cut(s)	533
DraIII	CACNNNGTG	1 cut(s)	262
Eam1104I	CTCTTC	5 cut(s)	192, 366, 372, 450, 474
EarI	CTCTTC	5 cut(s)	192, 366, 372, 450, 474
EciI	GGCGGA	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	453
FaiI	YATR	1 cut(s)	11
FokI	GGATG	3 cut(s)	155, 179, 437
FriOI	GRGCYC	1 cut(s)	453
FspBI	CTAG	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	2 cut(s)	140, 170
Hin1I	GRCGYC	1 cut(s)	132
HinfI	GANTC	5 cut(s)	74, 86, 92, 98, 548
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	2 cut(s)	320, 584
Hpy166II	GTNNAC	3 cut(s)	220, 256, 265
Hpy188I	TCNGA	6 cut(s)	85, 91, 97, 103, 538, 553
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	3 cut(s)	220, 256, 265
HpyAV	CCTTC	2 cut(s)	296, 499
HpyCH4III	ACNGT	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	4 cut(s)	366, 390, 420, 550
Hsp92I	GRCGYC	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	533
LguI	GCTCTTC	2 cut(s)	372, 474
LmnI	GCTCC	2 cut(s)	64, 520
LpnPI	CCDG	5 cut(s)	225, 264, 420, 470, 483
LweI	GCATC	2 cut(s)	424, 484
MaeI	CTAG	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	535
MboI	GATC	1 cut(s)	533
MboII	GAAGA	9 cut(s)	188, 209, 284, 383, 389, 443, 467, 485, 491
MfeI	CAATTG	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	5 cut(s)	83, 95, 101, 107, 542
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	59
MvnI	CGCG	2 cut(s)	164, 260
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	1 cut(s)	533
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	308
PciSI	GCTCTTC	2 cut(s)	372, 474
PleI	GAGTC	5 cut(s)	82, 94, 100, 106, 542
PpsI	GAGTC	5 cut(s)	82, 94, 100, 106, 542
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	1 cut(s)	245
RsaI	GTAC	3 cut(s)	71, 231, 395
RsaNI	GTAC	3 cut(s)	70, 230, 394
SapI	GCTCTTC	2 cut(s)	372, 474
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	533
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	5 cut(s)	83, 95, 101, 107, 542
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	6 cut(s)	69, 228, 384, 399, 415, 510
SfaNI	GCATC	2 cut(s)	424, 484
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	4 cut(s)	164, 260, 306, 403
SspMI	CTAG	1 cut(s)	383
TaaI	ACNGT	1 cut(s)	234
TasI	AATT	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	17, 486, 492
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.