Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Forward (+)

9946545 .. 9948007

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCGGAATACCATTCAGGACACCCTCGCTGCTCACAGGAATGAGCTTGTTTCTCTTTTCTCCAGGTATGTTGCTCGAGAAAATGGGATTCTGCAGCCTCATCAAATGATAAACGAGCTCGAAAACGTGATCATGGACGATGAAGGCATGCAGAAGCTCAAAGATAACTCCTTCAGCAAGGAAGCAATTGTTCTTGCTCCTTTCGTGGCTCTTGCACTTCGTCCAAGACCTGGTGTTTGGGAGTATGTTCGAGTTAATGTGTATGAACTCAGTATGGATCATTTGAGTGTTGCAGAATATCTTCGGTTCAAGGAAAAGCTTATGGACGGAGAGTGCAACGATAAGTATGTGCTTGAACTTGATCTGGAGCCATTTAATGCATCATTCCCTCGACCAACCCGTTCTTCATCAATTGGAAATGGGGTTCAATTCCTTAACCGTCATTTATCTTCAATTATGTTCCGTAACAAAGAAAGTTTGGAGCCTCTTCTTGACTTTCTTCGTACACACAAACATGATGGCCATGTAAGCAATGATGCTAAACGATCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

185

Amino Acids

21.27

Weight (kDa)

6.17

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUS_N	PF24861	1 - 105	1.9e-38	Sucrose synthase N-terminal
SUS_EPBD	PF24862	140 - 175	2.7e-10	Sucrose synthase EPBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	310, 356, 428, 453
AjnI	CCWGG	2 cut(s)	62, 229
AjuI	GAANNNNNNNTTGG	2 cut(s)	388, 420
AloI	GAACNNNNNNTCC	2 cut(s)	408, 440
AluBI	AGCT	4 cut(s)	46, 118, 157, 319
AluI	AGCT	4 cut(s)	46, 118, 157, 319
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	2 cut(s)	29, 94
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
Asp700I	GAANNNNTTC	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	75
BalI	TGGCCA	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	16, 106
BccI	CCATC	1 cut(s)	512
BciT130I	CCWGG	2 cut(s)	64, 231
BclI	TGATCA	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	30, 95
BlsI	GCNGC	2 cut(s)	31, 96
Bme1390I	CCNGG	2 cut(s)	64, 231
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	369, 483
BmrFI	CCNGG	2 cut(s)	64, 231
BmsI	GCATC	2 cut(s)	389, 526
BpmI	CTGGAG	2 cut(s)	46, 386
Bsa29I	ATCGAT	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	538
BseBI	CCWGG	2 cut(s)	64, 231
BseCI	ATCGAT	1 cut(s)	548
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	16, 106
Bsh1285I	CGRYCG	1 cut(s)	548
BshFI	GGCC	1 cut(s)	522
BshVI	ATCGAT	1 cut(s)	548
BsiEI	CGRYCG	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	230
BsnI	GGCC	1 cut(s)	522
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	5 cut(s)	129, 277, 361, 545, 549
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	1 cut(s)	282
BspDI	ATCGAT	1 cut(s)	548
BspLI	GGNNCC	2 cut(s)	369, 483
BspMAI	CTGCAG	1 cut(s)	96
BspPI	GGATC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	538
BssMI	GATC	5 cut(s)	129, 277, 361, 545, 549
Bst2UI	CCWGG	2 cut(s)	64, 231
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	269
BstKTI	GATC	5 cut(s)	132, 280, 364, 548, 552
BstMBI	GATC	5 cut(s)	129, 277, 361, 545, 549
BstMCI	CGRYCG	1 cut(s)	548
BstMWI	GCNNNNNNNGC	1 cut(s)	528
BstNI	CCWGG	2 cut(s)	64, 231
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	62, 229
BstSFI	CTRYAG	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	16, 106
Bsu15I	ATCGAT	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	522
BsuTUI	ATCGAT	1 cut(s)	548
Cac8I	GCNNGC	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	548
CsiI	ACCWGGT	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	4 cut(s)	133, 148, 515, 524
CviJI	RGCY	9 cut(s)	46, 97, 118, 157, 209, 319, 370, 484, 522
CviKI_1	RGCY	9 cut(s)	46, 97, 118, 157, 209, 319, 370, 484, 522
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	5 cut(s)	131, 279, 363, 547, 551
DpnII	GATC	5 cut(s)	129, 277, 361, 545, 549
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	62, 229
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	4 cut(s)	136, 151, 518, 527
FatI	CATG	4 cut(s)	132, 147, 514, 523
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	30, 95
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	30, 95
GluI	GCNGC	2 cut(s)	30, 95
GsuI	CTGGAG	2 cut(s)	46, 386
HaeIII	GGCC	1 cut(s)	522
Hin1II	CATG	4 cut(s)	136, 151, 518, 527
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	1 cut(s)	554
Hpy188III	TCNNGA	4 cut(s)	17, 77, 365, 491
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	2 cut(s)	137, 181
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	6 cut(s)	94, 151, 215, 293, 336, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	528
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	136, 151, 518, 527
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	129, 277, 361, 545, 549
LmnI	GCTCC	3 cut(s)	202, 367, 481
LpnPI	CCDG	7 cut(s)	2, 22, 49, 76, 216, 243, 350
Lsp1109I	GCAGC	2 cut(s)	16, 106
LweI	GCATC	2 cut(s)	389, 526
MabI	ACCWGGT	1 cut(s)	229
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	5 cut(s)	131, 279, 363, 547, 551
MboI	GATC	5 cut(s)	129, 277, 361, 545, 549
MboII	GAAGA	5 cut(s)	293, 396, 441, 479, 491
MfeI	CAATTG	2 cut(s)	186, 411
MhlI	GDGCHC	1 cut(s)	120
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	4 cut(s)	186, 411, 428, 453
MluNI	TGGCCA	1 cut(s)	522
MnlI	CCTC	4 cut(s)	35, 108, 399, 495
Mox20I	TGGCCA	1 cut(s)	522
Mph1103I	ATGCAT	1 cut(s)	382
MroXI	GAANNNNTTC	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	3 cut(s)	255, 375, 435
MslI	CAYNNNNRTG	3 cut(s)	39, 285, 513
Msp20I	TGGCCA	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	64, 231
MunI	CAATTG	2 cut(s)	186, 411
MvaI	CCWGG	2 cut(s)	64, 231
MwoI	GCNNNNNNNGC	1 cut(s)	528
NdeII	GATC	5 cut(s)	129, 277, 361, 545, 549
NlaIII	CATG	4 cut(s)	136, 151, 518, 527
NlaIV	GGNNCC	2 cut(s)	369, 483
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	151
PaeR7I	CTCGAG	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	31, 96
Ple19I	CGATCG	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	62, 229
PspGI	CCWGG	2 cut(s)	62, 229
PspN4I	GGNNCC	2 cut(s)	369, 483
PstI	CTGCAG	1 cut(s)	96
PvuI	CGATCG	1 cut(s)	548
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
RseI	CAYNNNNRTG	3 cut(s)	39, 285, 513
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	255, 375, 435
SatI	GCNGC	2 cut(s)	30, 95
Sau3AI	GATC	5 cut(s)	129, 277, 361, 545, 549
ScrFI	CCNGG	2 cut(s)	64, 231
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	7 cut(s)	48, 68, 120, 129, 159, 232, 321
SexAI	ACCWGGT	1 cut(s)	229
SfaNI	GCATC	2 cut(s)	389, 526
SfcI	CTRYAG	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	3 cut(s)	39, 285, 513
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	4 cut(s)	186, 411, 428, 453
SsiI	CCGC	1 cut(s)	4
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	62, 229
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	5 cut(s)	76, 120, 250, 391, 548
TasI	AATT	4 cut(s)	186, 411, 428, 453
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	3 cut(s)	255, 375, 435
Tru9I	TTAA	3 cut(s)	255, 375, 435
TseI	GCWGC	2 cut(s)	29, 94
TspDTI	ATGAA	3 cut(s)	156, 279, 396
TspGWI	ACGGA	2 cut(s)	342, 452
Van91I	CCANNNNNTGG	1 cut(s)	230
XceI	RCATGY	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.