Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003721

Physical Location & Seq

Genomic Coordinates Forward (+)

9948630 .. 9950787

Gene Structure 2158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGCTTCTTAGAATACAAAACCAAGGATTGGATGTTATTCCAAAAATTCTGATTGTTACCCGACTGATACCTGATGCAAAAGGGACAGCATGCAATCAAAGATTGGAAAGAGTCAGTGGTACAGAACACACACATATCTTGCGGGTACCTTTCAGGACTGAGAATGGAATTCTGCGGAAATGGATTTCAAGATTTGATGATGCCTCAAATGAAATTGCTGCTGAGTTGCAGGGTGTTCCAGATCTAATCATTGGAAACTACAGTGATGGAAATCTTGTTGCAACTCTGCTATCTTATAAACTGGGAATCACACAGTGCAACATTGCTCATGCATTGGAGAAAACAAAGTACCCAGATTCTGATATATTTTGGAAGAAGCATGAAGATAAGTACCATTTTTCAAGTCAATTAACAGACGATCTCATTGCAATGAACAATGCAGATTTCATAATAACCAGTACATGCCAAGAGATTGCCGGAAGCAAGAATAACGTTGGACAGTATGAGAGCCACACTGCCTTCACTCTTCCTGGGCTGTATCGAGTAGTTCACGGGATTGATGTTTTCGATCCCAAGTTTAATATCGTCTCCCCAGGAGCAGATATGTGTATATACTTTCCATGTTCTGACAAGGACAAAAGGCTTACTGCTCTACATGGGTCCACTGAAGAACTCTTATATGGTGCTGGGCAGAATGACGAGCATATTGGGCTGTTGAGTGATCGATCAAAGCCTATTGTCTTTTCCATGGCAAGACTTGATAGAGTGAAAAATTTAACTGGACTTGTTGAGTGCTATGCTAAAAGCACCAAGCTAAGAGAAAAGGTAAACCTTTTTGTGGTTGGTGGTTACATGGATGTCAAGAACTCTAGGGATAGAGAAGAAATTACAGAGATTCAAAAGACGCATGACCTCATTAAGAAATACAACTTGAGTGGCCAGTTCCGATGGATAGCAGCACAGATGAACCGTGCTCGTAATGGTGAGCTCTACCGCTACATTGCAGACACAAAAGGCATCTTTGTGCAGATCATCATTGAGCACGGTACCTCAGGGTTCCATGTTGATCCCTATAACCCTGATCAGGTGGCTGAACTCCTGATTGACTTCTTTGATCAGTGCCCAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

378

Amino Acids

42.71

Weight (kDa)

6.32

Isoelectric Point (pI)

27.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	1 - 227	1.9e-117	Sucrose synthase first GT-B domain
Glycos_transf_1	PF00534	238 - 333	1.4e-07	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49190 AT5G49190 AT5G49190
fragaria_vesca	FvH4_4g18710
malus_domestica	MD13G1164000.v1.1 MD13G1164100.v1.1 MD13G1164200.v1.1 MD16G1164000.v1.1
prunus_persica	Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1 Prupe.1G131700_v2.0.a1
pyrus_communis	pycom13g14010 pycom16g13860 pycom16g13870
rosa_chinensis	RchiOBHm_Chr4g0423411
rosa_laevigata	RLG00000007559
rosa_multiflora	Rmu_sc0000893.1_g000010 Rmu_ssc0000174.1_g000013
rosa_roxburghii	Rroxscaffold_4G00291020 Rroxscaffold_5G00365630
rosa_rugosa	Rorug04G0187400 Rorug04G0187500 Rorug04G0187600 Rorug04G0187700 Rorug07G0218200
rosa_samantha	Rh3BG353800 Rh4AG246400 Rh4BG251800 Rh4CG260300 Rh4DG247200 Rh6BG052100
rosa_wichuraiana	Rw1G026460 Rw4G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
Acc65I	GGTACC	2 cut(s)	145, 1046
AccB1I	GGYRCC	2 cut(s)	145, 1046
AccB7I	CCANNNNNTGG	1 cut(s)	28
AciI	CCGC	3 cut(s)	142, 175, 994
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	2 cut(s)	563, 1061
AcoI	YGGCCR	1 cut(s)	937
AcsI	RAATTY	4 cut(s)	45, 168, 772, 1127
AcuI	CTGAAG	1 cut(s)	687
AdeI	CACNNNGTG	1 cut(s)	315
AfaI	GTAC	6 cut(s)	121, 147, 350, 392, 460, 1048
AfiI	CCNNNNNNNGG	3 cut(s)	28, 838, 1084
AgsI	TTSAA	3 cut(s)	189, 402, 899
AjnI	CCWGG	2 cut(s)	529, 592
AluBI	AGCT	2 cut(s)	814, 988
AluI	AGCT	2 cut(s)	814, 988
Alw21I	GWGCWC	3 cut(s)	976, 990, 1044
Alw26I	GTCTC	1 cut(s)	592
AlwI	GGATC	2 cut(s)	563, 1061
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	937
ApeKI	GCWGC	2 cut(s)	218, 956
ApoI	RAATTY	4 cut(s)	45, 168, 772, 1127
Asp718I	GGTACC	2 cut(s)	145, 1046
AspS9I	GGNCC	1 cut(s)	660
AsuHPI	GGTGA	1 cut(s)	995
AvaII	GGWCC	1 cut(s)	660
AxyI	CCTNAGG	1 cut(s)	1051
BaeGI	GKGCMC	1 cut(s)	1124
BalI	TGGCCA	1 cut(s)	939
BanI	GGYRCC	2 cut(s)	145, 1046
BanII	GRGCYC	1 cut(s)	990
Bbv12I	GWGCWC	3 cut(s)	976, 990, 1044
BbvI	GCAGC	2 cut(s)	205, 968
BccI	CCATC	2 cut(s)	260, 942
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	2 cut(s)	531, 594
BclI	TGATCA	2 cut(s)	1081, 1114
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	1 cut(s)	870
BfmI	CTRYAG	1 cut(s)	259
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	2 cut(s)	219, 957
BlsI	GCNGC	2 cut(s)	220, 958
Bme1390I	CCNGG	2 cut(s)	531, 594
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	4 cut(s)	147, 661, 1048, 1058
BmrFI	CCNGG	2 cut(s)	531, 594
BmrI	ACTGGG	1 cut(s)	311
BmsI	GCATC	3 cut(s)	64, 190, 1026
BmuI	ACTGGG	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	952
Bsa29I	ATCGAT	1 cut(s)	724
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	4 cut(s)	22, 530, 592, 747
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 838, 1084
Bse1I	ACTGG	4 cut(s)	306, 456, 784, 940
Bse21I	CCTNAGG	1 cut(s)	1051
Bse3DI	GCAATG	4 cut(s)	321, 423, 435, 999
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	531, 594
BseCI	ATCGAT	1 cut(s)	724
BseDI	CCNNGG	4 cut(s)	22, 530, 592, 747
BseGI	GGATG	2 cut(s)	37, 862
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	28, 838, 1084
BseMI	GCAATG	4 cut(s)	321, 423, 435, 999
BseMII	CTCAG	3 cut(s)	150, 213, 1065
BseNI	ACTGG	4 cut(s)	306, 456, 784, 940
BseSI	GKGCMC	1 cut(s)	1124
BseXI	GCAGC	2 cut(s)	205, 968
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	1 cut(s)	1046
BshFI	GGCC	1 cut(s)	939
BshNI	GGYRCC	2 cut(s)	145, 1046
BshVI	ATCGAT	1 cut(s)	724
BsiHKAI	GWGCWC	3 cut(s)	976, 990, 1044
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	3 cut(s)	28, 838, 1084
BsmAI	GTCTC	1 cut(s)	592
BsmBI	CGTCTC	1 cut(s)	592
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	939
Bsp1286I	GDGCHC	4 cut(s)	976, 990, 1044, 1124
Bsp143I	GATC	9 cut(s)	241, 418, 568, 721, 725, 1029, 1066, 1081, 1114
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	3 cut(s)	142, 175, 994
BspANI	GGCC	1 cut(s)	939
BspCNI	CTCAG	3 cut(s)	151, 214, 1064
BspDI	ATCGAT	1 cut(s)	724
BspLI	GGNNCC	4 cut(s)	147, 661, 1048, 1058
BspPI	GGATC	2 cut(s)	563, 1061
BspT107I	GGYRCC	2 cut(s)	145, 1046
BsrDI	GCAATG	4 cut(s)	321, 423, 435, 999
BsrI	ACTGG	4 cut(s)	306, 456, 784, 940
BssECI	CCNNGG	4 cut(s)	22, 530, 592, 747
BssMI	GATC	9 cut(s)	241, 418, 568, 721, 725, 1029, 1066, 1081, 1114
BssT1I	CCWWGG	2 cut(s)	22, 747
Bst2UI	CCWGG	2 cut(s)	531, 594
Bst4CI	ACNGT	5 cut(s)	263, 315, 501, 971, 1046
Bst6I	CTCTTC	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	5 cut(s)	8, 159, 222, 815, 1051
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	2 cut(s)	37, 862
BstKTI	GATC	9 cut(s)	244, 421, 571, 724, 728, 1032, 1069, 1084, 1117
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	9 cut(s)	241, 418, 568, 721, 725, 1029, 1066, 1081, 1114
BstMWI	GCNNNNNNNGC	1 cut(s)	709
BstNI	CCWGG	2 cut(s)	531, 594
BstNSI	RCATGY	2 cut(s)	93, 465
BstSCI	CCNGG	2 cut(s)	529, 592
BstSFI	CTRYAG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	1124
BstV1I	GCAGC	2 cut(s)	205, 968
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	724
Bsu36I	CCTNAGG	1 cut(s)	1051
BsuRI	GGCC	1 cut(s)	939
BsuTUI	ATCGAT	1 cut(s)	724
BtgI	CCRYGG	1 cut(s)	747
BtsCI	GGATG	2 cut(s)	37, 862
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	6 cut(s)	121, 268, 320, 513, 663, 1124
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	660
ClaI	ATCGAT	1 cut(s)	724
CseI	GACGC	1 cut(s)	913
Csp6I	GTAC	6 cut(s)	120, 146, 349, 391, 459, 1047
CspCI	CAANNNNNGTGG	2 cut(s)	916, 951
CviJI	RGCY	9 cut(s)	510, 535, 643, 712, 733, 814, 939, 988, 1091
CviKI_1	RGCY	9 cut(s)	510, 535, 643, 712, 733, 814, 939, 988, 1091
CviQI	GTAC	6 cut(s)	120, 146, 349, 391, 459, 1047
DdeI	CTNAG	5 cut(s)	8, 159, 222, 815, 1051
DpnI	GATC	9 cut(s)	243, 420, 570, 723, 727, 1031, 1068, 1083, 1116
DpnII	GATC	9 cut(s)	241, 418, 568, 721, 725, 1029, 1066, 1081, 1114
DraIII	CACNNNGTG	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	937
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	988
Eco130I	CCWWGG	2 cut(s)	22, 747
Eco24I	GRGCYC	1 cut(s)	990
Eco47I	GGWCC	1 cut(s)	660
Eco53kI	GAGCTC	1 cut(s)	988
Eco57I	CTGAAG	1 cut(s)	687
Eco81I	CCTNAGG	1 cut(s)	1051
EcoICRI	GAGCTC	1 cut(s)	988
EcoRI	GAATTC	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	529, 592
EcoT14I	CCWWGG	2 cut(s)	22, 747
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	990
ErhI	CCWWGG	2 cut(s)	22, 747
Esp3I	CGTCTC	1 cut(s)	592
FaqI	GGGAC	1 cut(s)	97
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	2 cut(s)	1081, 1114
Fnu4HI	GCNGC	2 cut(s)	219, 957
FokI	GGATG	2 cut(s)	44, 869
FriOI	GRGCYC	1 cut(s)	990
Fsp4HI	GCNGC	2 cut(s)	219, 957
FspBI	CTAG	1 cut(s)	870
GluI	GCNGC	2 cut(s)	219, 957
GsaI	CCCAGC	1 cut(s)	690
HaeIII	GGCC	1 cut(s)	939
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	913
HinfI	GANTC	4 cut(s)	111, 306, 356, 895
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	1 cut(s)	995
Hpy166II	GTNNAC	3 cut(s)	550, 663, 829
Hpy188I	TCNGA	4 cut(s)	51, 361, 628, 947
Hpy188III	TCNNGA	5 cut(s)	154, 189, 239, 862, 1099
Hpy8I	GTNNAC	3 cut(s)	550, 663, 829
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	5 cut(s)	263, 315, 501, 971, 1046
HpyCH4IV	ACGT	1 cut(s)	492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	709
HpyF3I	CTNAG	5 cut(s)	8, 159, 222, 815, 1051
HpySE526I	ACGT	1 cut(s)	492
KpnI	GGTACC	2 cut(s)	149, 1050
Ksp22I	TGATCA	2 cut(s)	1081, 1114
Kzo9I	GATC	9 cut(s)	241, 418, 568, 721, 725, 1029, 1066, 1081, 1114
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	2 cut(s)	205, 968
LweI	GCATC	3 cut(s)	64, 190, 1026
MaeI	CTAG	1 cut(s)	870
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	2 cut(s)	55, 848
MalI	GATC	9 cut(s)	243, 420, 570, 723, 727, 1031, 1068, 1083, 1116
MboI	GATC	9 cut(s)	241, 418, 568, 721, 725, 1029, 1066, 1081, 1114
MboII	GAAGA	5 cut(s)	385, 395, 518, 680, 893
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	4 cut(s)	976, 990, 1044, 1124
MlsI	TGGCCA	1 cut(s)	939
MluCI	AATT	7 cut(s)	45, 168, 213, 407, 772, 885, 1127
MluNI	TGGCCA	1 cut(s)	939
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	3 cut(s)	214, 923, 1060
Mox20I	TGGCCA	1 cut(s)	939
Mph1103I	ATGCAT	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	939
MseI	TTAA	4 cut(s)	410, 579, 776, 918
MslI	CAYNNNNRTG	2 cut(s)	428, 1022
Msp20I	TGGCCA	1 cut(s)	939
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	531, 594
MvaI	CCWGG	2 cut(s)	531, 594
MwoI	GCNNNNNNNGC	1 cut(s)	709
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	9 cut(s)	241, 418, 568, 721, 725, 1029, 1066, 1081, 1114
NlaIV	GGNNCC	4 cut(s)	147, 661, 1048, 1058
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	2 cut(s)	93, 465
PaeI	GCATGC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	306, 356, 895
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	220, 958
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	990
Psp1406I	AACGTT	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	529, 592
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	2 cut(s)	529, 592
PspN4I	GGNNCC	4 cut(s)	147, 661, 1048, 1058
PspPI	GGNCC	1 cut(s)	660
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	6 cut(s)	121, 147, 350, 392, 460, 1048
RsaNI	GTAC	6 cut(s)	120, 146, 349, 391, 459, 1047
RseI	CAYNNNNRTG	2 cut(s)	428, 1022
SacI	GAGCTC	1 cut(s)	990
SaqAI	TTAA	4 cut(s)	410, 579, 776, 918
SatI	GCNGC	2 cut(s)	219, 957
Sau3AI	GATC	9 cut(s)	241, 418, 568, 721, 725, 1029, 1066, 1081, 1114
Sau96I	GGNCC	1 cut(s)	660
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	531, 594
SduI	GDGCHC	4 cut(s)	976, 990, 1044, 1124
SfaNI	GCATC	3 cut(s)	64, 190, 1026
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	660
SmiMI	CAYNNNNRTG	2 cut(s)	428, 1022
SmlI	CTYRAG	1 cut(s)	931
SmoI	CTYRAG	1 cut(s)	931
SphI	GCATGC	1 cut(s)	93
Sse9I	AATT	7 cut(s)	45, 168, 213, 407, 772, 885, 1127
SsiI	CCGC	3 cut(s)	142, 175, 994
SspMI	CTAG	1 cut(s)	870
SstI	GAGCTC	1 cut(s)	990
StyD4I	CCNGG	2 cut(s)	529, 592
StyI	CCWWGG	2 cut(s)	22, 747
TaaI	ACNGT	5 cut(s)	263, 315, 501, 971, 1046
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	3 cut(s)	541, 567, 724
TasI	AATT	7 cut(s)	45, 168, 213, 407, 772, 885, 1127
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	3 cut(s)	306, 356, 895
Tru1I	TTAA	4 cut(s)	410, 579, 776, 918
Tru9I	TTAA	4 cut(s)	410, 579, 776, 918
TscAI	CASTG	6 cut(s)	121, 268, 320, 520, 670, 1124
TseI	GCWGC	2 cut(s)	218, 956
TspDTI	ATGAA	5 cut(s)	225, 396, 436, 446, 980
TspRI	CASTG	6 cut(s)	121, 268, 320, 520, 670, 1124
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	4 cut(s)	45, 168, 772, 1127
XceI	RCATGY	2 cut(s)	93, 465
XspI	CTAG	1 cut(s)	870
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.