Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003931

Physical Location & Seq

Genomic Coordinates Forward (+)

9957625 .. 9959318

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCGACCAATATCGAGTGTTCTATTAAAAGAGAAGGAGATTCATACATCATCAACGGAAAGAAATGGTGGACAAGTGGCGCTATGGATCGATCGATCGAGGTGTAGAGTTCTTATAGTCATGGGGAAAACCGACTTCAATGCTTCCATGCATAAGCAGCAATCTATGATCTTAGTGGATATCCAGACTCCAGGTGTACACATAAAGAGACCACTTACGGTTTTTGGCTTTGATGATGCACCTCATGGGCATGCAGAAGTATTATTTGAGAATGTACGTGTCCCAGCAAAAAATATTCTACTTGGAGAAGGACGCGGGTTTGAAATCGCACAGGGTAGACTAGGCCCAGGAAGGTTACACCATTGCATGAGGCTGATAGGAGCTGCCGAGCGTGGCATGCAGCTAATGGCTCAAAGGGCTCTTAGTAGAAAAGTTTTCGGGAAGTTGATTGCTGAACAAGGCTCATTTCTTTCGGATATTGCAAAGTGTCGAATTGAGCTAGAGAAAGCCAGATTGTTGGTTCTGGAGGCAGCTGACCAGCTTGATAGACTTGGAAACAAAAAGGCCCGAGGAACTATAGCAATGGCAAAGGTAGCAGCCCCAAACATGGCGCTAATGGTGCTTGACATGGCAATGCAAGTGCACGGTGGCGCTGGCTTGTCTTCCGACACTTGTCTGGCACATCTTTGGGCCACGGCAAGAACATTGAGAATCGCAGATGGTCCAGATGAAGTCCACTTGGGTACTATCGCCAAGTTAGAACTACGGAGAGCCAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016042 GO:0016049 GO:0016054 GO:0016491 GO:0016627 GO:0019395 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0040007 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050660 GO:0050662 GO:0055114 GO:0060560 GO:0071695 GO:0071704 GO:0072329 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901265 GO:1901363 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00410 ko00640 ko01100 ko01110 ko01130 ko01200 ko01212 ko03320 map00071 map00280 map00410 map00640 map01100 map01110 map01130 map01200 map01212 map03320

Pfam Domains

Protein Families

APH Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

261

Amino Acids

28.52

Weight (kDa)

9.86

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_1	PF00441	104 - 252	1.8e-36	Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_2	PF08028	120 - 230	3.1e-08	Acyl-CoA dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06810
fragaria_vesca	FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700 FvH4_4g18700
malus_domestica	MD13G1164300.v1.1 MD16G1164100.v1.1
prunus_persica	Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1 Prupe.1G131800_v2.0.a1
pyrus_communis	pycom13g14030 pycom16g13880 pycom16g13890
rosa_chinensis	RchiOBHm_Chr3g0480631 RchiOBHm_Chr4g0423401 RchiOBHm_Chr6g0311831
rosa_laevigata	RLG00000007561
rosa_multiflora	Rmu_sc0002752.1_g000004 Rmu_ssc0000174.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365600
rosa_rugosa	Rorug04G0187300
rosa_samantha	Rh1BG304700 Rh3AG236600 Rh3DG262000 Rh4AG246200 Rh4AG246300 Rh4BG251700 Rh4CG260200 Rh4DG247100
rosa_wichuraiana	Rw4G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	337
AccII	CGCG	1 cut(s)	315
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	95
AfaI	GTAC	3 cut(s)	198, 276, 745
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	139, 323
AjnI	CCWGG	2 cut(s)	190, 346
AluBI	AGCT	5 cut(s)	383, 403, 499, 533, 541
AluI	AGCT	5 cut(s)	383, 403, 499, 533, 541
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	1 cut(s)	202
Alw44I	GTGCAC	1 cut(s)	641
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	567
AoxI	GGCC	3 cut(s)	343, 564, 690
ApaLI	GTGCAC	1 cut(s)	641
ApeKI	GCWGC	5 cut(s)	157, 383, 400, 530, 596
AspLEI	GCGC	3 cut(s)	82, 613, 653
AspS9I	GGNCC	4 cut(s)	344, 565, 690, 722
AvaI	CYCGRG	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	722
BaeGI	GKGCMC	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	5 cut(s)	169, 370, 412, 542, 608
BccI	CCATC	1 cut(s)	713
BceAI	ACGGC	1 cut(s)	711
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	2 cut(s)	192, 348
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	341, 500
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	3 cut(s)	83, 614, 654
BisI	GCNGC	5 cut(s)	158, 384, 401, 531, 597
BlsI	GCNGC	5 cut(s)	159, 385, 402, 532, 598
Bme1390I	CCNGG	2 cut(s)	192, 348
Bme18I	GGWCC	1 cut(s)	722
BmeT110I	CYCGRG	1 cut(s)	567
BmgT120I	GGNCC	4 cut(s)	344, 565, 690, 722
BmrFI	CCNGG	2 cut(s)	192, 348
BmsI	GCATC	1 cut(s)	226
BoxI	GACNNNNGTC	1 cut(s)	672
BpiI	GAAGAC	1 cut(s)	654
BplI	GAGNNNNNCTC	1 cut(s)	762
BpmI	CTGGAG	2 cut(s)	174, 545
Bsa29I	ATCGAT	2 cut(s)	90, 94
BsaAI	YACGTR	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	346, 568, 693
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse3DI	GCAATG	3 cut(s)	361, 588, 639
BseBI	CCWGG	2 cut(s)	192, 348
BseCI	ATCGAT	2 cut(s)	90, 94
BseDI	CCNNGG	3 cut(s)	346, 568, 693
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMI	GCAATG	3 cut(s)	361, 588, 639
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	5 cut(s)	169, 370, 412, 542, 608
BseYI	CCCAGC	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	315
Bsh1285I	CGRYCG	2 cut(s)	94, 98
BshFI	GGCC	3 cut(s)	345, 566, 692
BshVI	ATCGAT	2 cut(s)	90, 94
BsiEI	CGRYCG	2 cut(s)	94, 98
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	1 cut(s)	567
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	345, 566, 692
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	421, 645
Bsp1407I	TGTACA	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	87, 91, 95, 168
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	3 cut(s)	345, 566, 692
BspDI	ATCGAT	2 cut(s)	90, 94
BspFNI	CGCG	1 cut(s)	315
BspPI	GGATC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	3 cut(s)	361, 588, 639
BsrGI	TGTACA	1 cut(s)	196
BssECI	CCNNGG	3 cut(s)	346, 568, 693
BssMI	GATC	4 cut(s)	87, 91, 95, 168
Bst2UI	CCWGG	2 cut(s)	192, 348
Bst4CI	ACNGT	2 cut(s)	220, 647
BstAUI	TGTACA	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	3 cut(s)	252, 398, 655
BstDEI	CTNAG	2 cut(s)	172, 422
BstDSI	CCRYGG	1 cut(s)	693
BstFNI	CGCG	1 cut(s)	315
BstH2I	RGCGCY	3 cut(s)	83, 614, 654
BstHHI	GCGC	3 cut(s)	82, 613, 653
BstKTI	GATC	4 cut(s)	90, 94, 98, 171
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	4 cut(s)	87, 91, 95, 168
BstMCI	CGRYCG	2 cut(s)	94, 98
BstMWI	GCNNNNNNNGC	5 cut(s)	157, 397, 416, 593, 619
BstNI	CCWGG	2 cut(s)	192, 348
BstNSI	RCATGY	2 cut(s)	254, 400
BstPAI	GACNNNNGTC	1 cut(s)	672
BstSCI	CCNGG	2 cut(s)	190, 346
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	645
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	5 cut(s)	169, 370, 412, 542, 608
BstV2I	GAAGAC	1 cut(s)	654
BstXI	CCANNNNNNTGG	1 cut(s)	517
Bsu15I	ATCGAT	2 cut(s)	90, 94
BsuRI	GGCC	3 cut(s)	345, 566, 692
BsuTUI	ATCGAT	2 cut(s)	90, 94
BtgI	CCRYGG	1 cut(s)	693
Cac8I	GCNNGC	3 cut(s)	252, 398, 655
CfoI	GCGC	3 cut(s)	82, 613, 653
Cfr13I	GGNCC	4 cut(s)	344, 565, 690, 722
ClaI	ATCGAT	2 cut(s)	90, 94
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	3 cut(s)	197, 275, 744
CviAII	CATG	8 cut(s)	121, 148, 245, 251, 367, 397, 607, 628
CviQI	GTAC	3 cut(s)	197, 275, 744
DdeI	CTNAG	2 cut(s)	172, 422
DpnI	GATC	4 cut(s)	89, 93, 97, 170
DpnII	GATC	4 cut(s)	87, 91, 95, 168
Eco24I	GRGCYC	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	722
Eco88I	CYCGRG	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	190, 346
EcoRV	GATATC	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	8 cut(s)	124, 151, 248, 254, 370, 400, 610, 631
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	8 cut(s)	120, 147, 244, 250, 366, 396, 606, 627
FauI	CCCGC	1 cut(s)	308
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	158, 384, 401, 531, 597
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	5 cut(s)	158, 384, 401, 531, 597
FspBI	CTAG	2 cut(s)	341, 500
GlaI	GCGC	3 cut(s)	81, 612, 652
GluI	GCNGC	5 cut(s)	158, 384, 401, 531, 597
GsaI	CCCAGC	1 cut(s)	287
GsuI	CTGGAG	2 cut(s)	174, 545
HaeII	RGCGCY	3 cut(s)	83, 614, 654
HaeIII	GGCC	3 cut(s)	345, 566, 692
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	3 cut(s)	82, 613, 653
Hin1II	CATG	8 cut(s)	124, 151, 248, 254, 370, 400, 610, 631
Hin6I	GCGC	3 cut(s)	80, 611, 651
HinP1I	GCGC	3 cut(s)	80, 611, 651
HinfI	GANTC	3 cut(s)	40, 187, 711
Hpy166II	GTNNAC	6 cut(s)	71, 197, 199, 338, 643, 736
Hpy188I	TCNGA	3 cut(s)	475, 667, 782
Hpy188III	TCNNGA	4 cut(s)	184, 439, 524, 725
Hpy8I	GTNNAC	6 cut(s)	71, 197, 199, 338, 643, 736
HpyAV	CCTTC	3 cut(s)	28, 302, 345
HpyCH4III	ACNGT	2 cut(s)	220, 647
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	8 cut(s)	151, 239, 254, 366, 400, 482, 637, 643
HpyF10VI	GCNNNNNNNGC	5 cut(s)	157, 397, 416, 593, 619
HpyF3I	CTNAG	2 cut(s)	172, 422
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	8 cut(s)	124, 151, 248, 254, 370, 400, 610, 631
HspAI	GCGC	3 cut(s)	80, 611, 651
Kzo9I	GATC	4 cut(s)	87, 91, 95, 168
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	5 cut(s)	169, 370, 412, 542, 608
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	2 cut(s)	341, 500
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	4 cut(s)	89, 93, 97, 170
MboI	GATC	4 cut(s)	87, 91, 95, 168
MboII	GAAGA	1 cut(s)	654
MhlI	GDGCHC	2 cut(s)	421, 645
MluCI	AATT	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	5 cut(s)	93, 252, 363, 520, 563
Mph1103I	ATGCAT	1 cut(s)	153
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	2 cut(s)	249, 632
MspA1I	CMGCKG	1 cut(s)	533
MspR9I	CCNGG	2 cut(s)	192, 348
MvaI	CCWGG	2 cut(s)	192, 348
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	5 cut(s)	157, 397, 416, 593, 619
NdeII	GATC	4 cut(s)	87, 91, 95, 168
NlaIII	CATG	8 cut(s)	124, 151, 248, 254, 370, 400, 610, 631
NmeAIII	GCCGAG	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	153
NspI	RCATGY	2 cut(s)	254, 400
PaeI	GCATGC	2 cut(s)	254, 400
PfeI	GAWTC	2 cut(s)	40, 711
PkrI	GCNGC	5 cut(s)	159, 385, 402, 532, 598
Ple19I	CGATCG	2 cut(s)	94, 98
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	278
PshAI	GACNNNNGTC	1 cut(s)	672
Psp6I	CCWGG	2 cut(s)	190, 346
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	2 cut(s)	190, 346
PspPI	GGNCC	4 cut(s)	344, 565, 690, 722
PvuI	CGATCG	2 cut(s)	94, 98
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	3 cut(s)	198, 276, 745
RsaNI	GTAC	3 cut(s)	197, 275, 744
RseI	CAYNNNNRTG	2 cut(s)	249, 632
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	5 cut(s)	158, 384, 401, 531, 597
Sau3AI	GATC	4 cut(s)	87, 91, 95, 168
Sau96I	GGNCC	4 cut(s)	344, 565, 690, 722
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	192, 348
SduI	GDGCHC	2 cut(s)	421, 645
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	722
SmiMI	CAYNNNNRTG	2 cut(s)	249, 632
SphI	GCATGC	2 cut(s)	254, 400
Sse9I	AATT	1 cut(s)	492
SsiI	CCGC	1 cut(s)	315
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	2 cut(s)	341, 500
StyD4I	CCNGG	2 cut(s)	190, 346
TaaI	ACNGT	2 cut(s)	220, 647
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	5 cut(s)	14, 90, 94, 98, 490
TasI	AATT	1 cut(s)	492
TatI	WGTACW	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	40, 711
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	5 cut(s)	157, 383, 400, 530, 596
TspDTI	ATGAA	2 cut(s)	32, 744
TspGWI	ACGGA	2 cut(s)	71, 781
VneI	GTGCAC	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	722
XceI	RCATGY	2 cut(s)	254, 400
XmiI	GTMKAC	1 cut(s)	337
XspI	CTAG	2 cut(s)	341, 500
Zsp2I	ATGCAT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.