pycom16g14100

UDP-glucuronic acid decarboxylase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
10127816 .. 10131151
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
ATGACGACCTATCACAACCCGTTCTCGAACCGCAAACCAATCACACTTCCTCCGCCAACCCGATTCGCTACGTGCTCCGCGAGCAGCGCTTTATCTTCGTCCTCATCGGCGTCGCCATCGCCGTTTTCTTCTTCACCACCTTCCCGGTACCGAACCCACAATTACAGTCCGCACAGAACTCAGGTTTTGAATCCGGGTCGAGTTTTGCCGGGCAGGGTAATGATCTGCCGGCCAACCCGACCCGGAGAGTGCTGTTGGAGACGCGGAATGTGGGCGGGAAGGTGCCCATCGATCTACCACCTCGCTTGCCCGGCATCCCCTGTGCATTACAAGTTCAATCCGGTCAAGACAATTATATCCTTTCTCTGGAAAAAAGATATATATGGTGTGCATGTGGTATTGCTTGGGGTCCTTAATTTGTTGTGTGAGTTGGGGCTGCACAAGACAAATGTGGTGGGAACACTGAACATGCTTGGATTGGCAAAAAGGGTTGGCGCACGCTTCTTGCTCACAAGCACCAGCGAGGTTTACGGTGACCCTTTGCAGCACCCTCAGGTCGAGTCCTACTGGGGCAATGTCAACCCCATCGGTGTAAGGAGCTGCTACGATGAGGGAAAACGCACAGCAGAGACTCTGACCATGGACTACCACAGAGGCCTTGGCATTGAGGTGAGGATTGCTCGGATTTTCAATACTTATGGACCGCGTATGTGCATCGACGATGGCCGGGTTGTTAGCAATTTCGTAGCTCAGGTCGAGGGTCTAATGCGGCTGATGGAAGGAAATCATGTGGGACCTTTCAACCTTGGCAACCCTGGCGAATTCACCATGCTAGAACTTGCTCAGGTTGTGCAAGACACAATAGATCCAAATGCAAAGATAGAGTTCAGACCCAACACAGAGGACGACCCACACAAGAGGAAGCCGGATATTTCGAAGGCGAAAGAGCTTCTGGGGTGGGAGCCCACCGTGTCCCTCCGCAAGGGGCTGCCGCTCATGGTTAACGACTTTCGGCAGCGTATTTTTGGTGACTCCAAGGGCAATGATGCGGGCTCCGCTATGTAA

Protein Analysis

355

Amino Acids

39.41

Weight (kDa)

9.42

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 146 - 252 2e-16 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 148 - 253 4.8e-20 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 2 cut(s) 147, 282
AccBSI CCGCTC 1 cut(s) 994
AccII CGCG 3 cut(s) 80, 264, 706
AclWI GGATC 1 cut(s) 860
AcoI YGGCCR 2 cut(s) 230, 724
AcsI RAATTY 1 cut(s) 821
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 1 cut(s) 149
AfeI AGCGCT 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 366, 982
AgsI TTSAA 4 cut(s) 190, 337, 691, 802
AjnI CCWGG 1 cut(s) 814
AluBI AGCT 3 cut(s) 600, 749, 949
AluI AGCT 3 cut(s) 600, 749, 949
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 2 cut(s) 253, 623
AlwI GGATC 1 cut(s) 860
Aor51HI AGCGCT 1 cut(s) 88
AoxI GGCC 3 cut(s) 230, 655, 724
ApeKI GCWGC 6 cut(s) 84, 436, 544, 600, 988, 1015
ApoI RAATTY 1 cut(s) 821
Asp718I GGTACC 1 cut(s) 147
AspLEI GCGC 2 cut(s) 89, 497
AspS9I GGNCC 3 cut(s) 409, 701, 794
AsuC2I CCSGG 6 cut(s) 145, 195, 210, 243, 311, 728
AsuHPI GGTGA 5 cut(s) 126, 545, 682, 817, 1040
AsuII TTCGAA 1 cut(s) 935
AvaII GGWCC 3 cut(s) 409, 701, 794
AxyI CCTNAGG 1 cut(s) 552
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 2 cut(s) 147, 282
BanII GRGCYC 2 cut(s) 966, 1055
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 6 cut(s) 96, 423, 556, 587, 975, 1027
BccI CCATC 5 cut(s) 124, 295, 593, 716, 769
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 816
BcnI CCSGG 6 cut(s) 145, 195, 210, 243, 311, 728
BcoDI GTCTC 2 cut(s) 253, 623
BfaI CTAG 1 cut(s) 833
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 8 cut(s) 85, 437, 545, 601, 770, 989, 992, 1016
BlsI GCNGC 8 cut(s) 86, 438, 546, 602, 771, 990, 993, 1017
Bme1390I CCNGG 7 cut(s) 145, 195, 210, 243, 311, 728, 816
Bme18I GGWCC 3 cut(s) 409, 701, 794
BmgT120I GGNCC 3 cut(s) 409, 701, 794
BmiI GGNNCC 6 cut(s) 149, 284, 410, 795, 963, 1054
BmrFI CCNGG 7 cut(s) 145, 195, 210, 243, 311, 728, 816
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 3 cut(s) 323, 723, 1036
BmuI ACTGGG 1 cut(s) 577
BplI GAGNNNNNCTC 2 cut(s) 664, 696
Bpu10I CCTNAGC 2 cut(s) 750, 843
Bpu14I TTCGAA 1 cut(s) 935
BpuMI CCSGG 6 cut(s) 145, 195, 210, 243, 311, 728
Bsa29I ATCGAT 1 cut(s) 290
BsaAI YACGTR 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 110
BsaJI CCNNGG 5 cut(s) 639, 658, 805, 814, 1035
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 982
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 572
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 2 cut(s) 580, 1048
BseBI CCWGG 1 cut(s) 816
BseCI ATCGAT 1 cut(s) 290
BseDI CCNNGG 5 cut(s) 639, 658, 805, 814, 1035
BseGI GGATG 1 cut(s) 314
BseLI CCNNNNNNNGG 2 cut(s) 366, 982
BseMI GCAATG 2 cut(s) 580, 1048
BseMII CTCAG 4 cut(s) 194, 566, 764, 857
BseNI ACTGG 1 cut(s) 572
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 6 cut(s) 96, 423, 556, 587, 975, 1027
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 3 cut(s) 80, 264, 706
BshFI GGCC 3 cut(s) 232, 657, 726
BshNI GGYRCC 2 cut(s) 147, 282
BshVI ATCGAT 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 9 cut(s) 145, 194, 209, 229, 243, 311, 341, 727, 926
BslFI GGGAC 2 cut(s) 807, 958
BslI CCNNNNNNNGG 2 cut(s) 366, 982
BsmAI GTCTC 2 cut(s) 253, 623
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 2 cut(s) 807, 958
BsnI GGCC 3 cut(s) 232, 657, 726
Bsp119I TTCGAA 1 cut(s) 935
Bsp1286I GDGCHC 4 cut(s) 77, 287, 966, 1055
Bsp143I GATC 3 cut(s) 222, 291, 865
Bsp19I CCATGG 1 cut(s) 639
BspANI GGCC 3 cut(s) 232, 657, 726
BspCNI CTCAG 4 cut(s) 193, 565, 763, 856
BspDI ATCGAT 1 cut(s) 290
BspFNI CGCG 3 cut(s) 80, 264, 706
BspLI GGNNCC 6 cut(s) 149, 284, 410, 795, 963, 1054
BspPI GGATC 1 cut(s) 860
BspT104I TTCGAA 1 cut(s) 935
BspT107I GGYRCC 2 cut(s) 147, 282
BsrBI CCGCTC 1 cut(s) 994
BsrDI GCAATG 2 cut(s) 580, 1048
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 1 cut(s) 572
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 5 cut(s) 639, 658, 805, 814, 1035
BssMI GATC 3 cut(s) 222, 291, 865
BssNI GRCGYC 1 cut(s) 110
BssT1I CCWWGG 4 cut(s) 639, 658, 805, 1035
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 3 cut(s) 167, 533, 970
BstACI GRCGYC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 935
BstC8I GCNNGC 5 cut(s) 82, 230, 307, 499, 1051
BstDEI CTNAG 4 cut(s) 180, 552, 750, 843
BstDSI CCRYGG 1 cut(s) 639
BstEII GGTNACC 1 cut(s) 533
BstENI CCTNNNNNAGG 1 cut(s) 980
BstF5I GGATG 1 cut(s) 314
BstFNI CGCG 3 cut(s) 80, 264, 706
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 497
BstKTI GATC 3 cut(s) 225, 294, 868
BstMAI GTCTC 2 cut(s) 253, 623
BstMBI GATC 3 cut(s) 222, 291, 865
BstMWI GCNNNNNNNGC 5 cut(s) 81, 86, 311, 816, 1055
BstNI CCWGG 1 cut(s) 816
BstNSI RCATGY 2 cut(s) 395, 472
BstPI GGTNACC 1 cut(s) 533
BstSCI CCNGG 7 cut(s) 143, 193, 208, 241, 309, 726, 814
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 3 cut(s) 80, 264, 706
BstV1I GCAGC 6 cut(s) 96, 423, 556, 587, 975, 1027
BstX2I RGATCY 1 cut(s) 865
BstYI RGATCY 1 cut(s) 865
Bsu15I ATCGAT 1 cut(s) 290
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 3 cut(s) 232, 657, 726
BsuTUI ATCGAT 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 639
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 314
BtsIMutI CAGTG 1 cut(s) 461
Cac8I GCNNGC 5 cut(s) 82, 230, 307, 499, 1051
CfoI GCGC 2 cut(s) 89, 497
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 409, 701, 794
ClaI ATCGAT 1 cut(s) 290
CseI GACGC 2 cut(s) 99, 270
Csp6I GTAC 1 cut(s) 148
CspCI CAANNNNNGTGG 4 cut(s) 287, 322, 435, 470
CviAII CATG 6 cut(s) 392, 469, 640, 788, 829, 997
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 4 cut(s) 180, 552, 750, 843
DpnI GATC 3 cut(s) 224, 293, 867
DpnII GATC 3 cut(s) 222, 291, 865
EaeI YGGCCR 2 cut(s) 230, 724
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 4 cut(s) 639, 658, 805, 1035
Eco147I AGGCCT 1 cut(s) 657
Eco24I GRGCYC 2 cut(s) 966, 1055
Eco47I GGWCC 3 cut(s) 409, 701, 794
Eco47III AGCGCT 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 552
Eco91I GGTNACC 1 cut(s) 533
EcoNI CCTNNNNNAGG 1 cut(s) 980
EcoO109I RGGNCCY 2 cut(s) 409, 794
EcoO65I GGTNACC 1 cut(s) 533
EcoRI GAATTC 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 814
EcoT14I CCWWGG 4 cut(s) 639, 658, 805, 1035
EcoT38I GRGCYC 2 cut(s) 966, 1055
ErhI CCWWGG 4 cut(s) 639, 658, 805, 1035
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 6 cut(s) 395, 472, 643, 791, 832, 1000
FaqI GGGAC 2 cut(s) 807, 958
FatI CATG 6 cut(s) 391, 468, 639, 787, 828, 996
FauI CCCGC 2 cut(s) 268, 1042
Fnu4HI GCNGC 8 cut(s) 85, 437, 545, 601, 770, 989, 992, 1016
FokI GGATG 1 cut(s) 301
FriOI GRGCYC 2 cut(s) 966, 1055
Fsp4HI GCNGC 8 cut(s) 85, 437, 545, 601, 770, 989, 992, 1016
FspBI CTAG 1 cut(s) 833
GlaI GCGC 2 cut(s) 88, 496
GluI GCNGC 8 cut(s) 85, 437, 545, 601, 770, 989, 992, 1016
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 3 cut(s) 232, 657, 726
HapII CCGG 9 cut(s) 145, 194, 209, 229, 243, 311, 341, 727, 926
HgaI GACGC 2 cut(s) 99, 270
HhaI GCGC 2 cut(s) 89, 497
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 6 cut(s) 395, 472, 643, 791, 832, 1000
Hin6I GCGC 2 cut(s) 87, 495
HinP1I GCGC 2 cut(s) 87, 495
HincII GTYRAC 2 cut(s) 580, 1003
HindII GTYRAC 2 cut(s) 580, 1003
HinfI GANTC 5 cut(s) 63, 190, 560, 631, 1031
HpaI GTTAAC 1 cut(s) 1003
HpaII CCGG 9 cut(s) 145, 194, 209, 229, 243, 311, 341, 727, 926
HphI GGTGA 5 cut(s) 126, 545, 682, 817, 1040
Hpy166II GTNNAC 3 cut(s) 529, 580, 1003
Hpy188I TCNGA 3 cut(s) 636, 684, 890
Hpy188III TCNNGA 3 cut(s) 25, 346, 367
Hpy8I GTNNAC 3 cut(s) 529, 580, 1003
Hpy99I CGWCG 2 cut(s) 115, 722
HpyAV CCTTC 4 cut(s) 150, 273, 773, 931
HpyCH4III ACNGT 3 cut(s) 167, 533, 970
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 7 cut(s) 325, 391, 439, 544, 714, 853, 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 86, 311, 816, 1055
HpyF3I CTNAG 4 cut(s) 180, 552, 750, 843
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 6 cut(s) 395, 472, 643, 791, 832, 1000
HspAI GCGC 2 cut(s) 87, 495
KpnI GGTACC 1 cut(s) 151
KroI GCCGGC 1 cut(s) 228
KroNI GCCGGC 1 cut(s) 230
KspAI GTTAAC 1 cut(s) 1003
Kzo9I GATC 3 cut(s) 222, 291, 865
LmnI GCTCC 4 cut(s) 80, 597, 961, 1058
Lsp1109I GCAGC 6 cut(s) 96, 423, 556, 587, 975, 1027
LweI GCATC 3 cut(s) 323, 723, 1036
MaeI CTAG 1 cut(s) 833
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 533, 1028
MalI GATC 3 cut(s) 224, 293, 867
MbiI CCGCTC 1 cut(s) 994
MboI GATC 3 cut(s) 222, 291, 865
MboII GAAGA 3 cut(s) 87, 120, 123
MflI RGATCY 1 cut(s) 865
MhlI GDGCHC 4 cut(s) 77, 287, 966, 1055
MluCI AATT 5 cut(s) 160, 351, 415, 739, 821
MlyI GAGTC 3 cut(s) 569, 625, 1025
MmeI TCCRAC 1 cut(s) 236
MroNI GCCGGC 1 cut(s) 228
MseI TTAA 2 cut(s) 414, 1002
MslI CAYNNNNRTG 1 cut(s) 668
MspI CCGG 9 cut(s) 145, 194, 209, 229, 243, 311, 341, 727, 926
MspR9I CCNGG 7 cut(s) 145, 195, 210, 243, 311, 728, 816
MvaI CCWGG 1 cut(s) 816
MvnI CGCG 3 cut(s) 80, 264, 706
MwoI GCNNNNNNNGC 5 cut(s) 81, 86, 311, 816, 1055
NaeI GCCGGC 1 cut(s) 230
NciI CCSGG 6 cut(s) 145, 195, 210, 243, 311, 728
NcoI CCATGG 1 cut(s) 639
NdeII GATC 3 cut(s) 222, 291, 865
NgoMIV GCCGGC 1 cut(s) 228
NlaIII CATG 6 cut(s) 395, 472, 643, 791, 832, 1000
NlaIV GGNNCC 6 cut(s) 149, 284, 410, 795, 963, 1054
NmuCI GTSAC 2 cut(s) 533, 1028
NspI RCATGY 2 cut(s) 395, 472
NspV TTCGAA 1 cut(s) 935
PceI AGGCCT 1 cut(s) 657
PcsI WCGNNNNNNNCGW 2 cut(s) 77, 119
PdiI GCCGGC 1 cut(s) 230
PfeI GAWTC 2 cut(s) 63, 190
PkrI GCNGC 8 cut(s) 86, 438, 546, 602, 771, 990, 993, 1017
PleI GAGTC 3 cut(s) 568, 625, 1025
PpsI GAGTC 3 cut(s) 568, 625, 1025
Ppu21I YACGTR 1 cut(s) 72
PpuMI RGGWCCY 2 cut(s) 409, 794
Psp5II RGGWCCY 2 cut(s) 409, 794
Psp6I CCWGG 1 cut(s) 814
PspEI GGTNACC 1 cut(s) 533
PspGI CCWGG 1 cut(s) 814
PspN4I GGNNCC 6 cut(s) 149, 284, 410, 795, 963, 1054
PspPI GGNCC 3 cut(s) 409, 701, 794
PspPPI RGGWCCY 2 cut(s) 409, 794
PsuI RGATCY 1 cut(s) 865
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 668
SaqAI TTAA 2 cut(s) 414, 1002
SatI GCNGC 8 cut(s) 85, 437, 545, 601, 770, 989, 992, 1016
Sau3AI GATC 3 cut(s) 222, 291, 865
Sau96I GGNCC 3 cut(s) 409, 701, 794
SchI GAGTC 3 cut(s) 569, 625, 1025
ScrFI CCNGG 7 cut(s) 145, 195, 210, 243, 311, 728, 816
SduI GDGCHC 4 cut(s) 77, 287, 966, 1055
SfaNI GCATC 3 cut(s) 323, 723, 1036
SfuI TTCGAA 1 cut(s) 935
SinI GGWCC 3 cut(s) 409, 701, 794
SmiMI CAYNNNNRTG 1 cut(s) 668
Sse9I AATT 5 cut(s) 160, 351, 415, 739, 821
SseBI AGGCCT 1 cut(s) 657
SspMI CTAG 1 cut(s) 833
StuI AGGCCT 1 cut(s) 657
StyD4I CCNGG 7 cut(s) 143, 193, 208, 241, 309, 726, 814
StyI CCWWGG 4 cut(s) 639, 658, 805, 1035
TaaI ACNGT 3 cut(s) 167, 533, 970
TaiI ACGT 1 cut(s) 74
TaqI TCGA 7 cut(s) 26, 199, 290, 558, 717, 756, 935
TasI AATT 5 cut(s) 160, 351, 415, 739, 821
TauI GCSGC 2 cut(s) 772, 994
TfiI GAWTC 2 cut(s) 63, 190
Tru1I TTAA 2 cut(s) 414, 1002
Tru9I TTAA 2 cut(s) 414, 1002
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 2 cut(s) 533, 1028
TseI GCWGC 6 cut(s) 84, 436, 544, 600, 988, 1015
Tsp45I GTSAC 2 cut(s) 533, 1028
TspRI CASTG 1 cut(s) 468
VpaK11BI GGWCC 3 cut(s) 409, 701, 794
XagI CCTNNNNNAGG 1 cut(s) 980
XapI RAATTY 1 cut(s) 821
XceI RCATGY 2 cut(s) 395, 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 656
XspI CTAG 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.