Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006403

Physical Location & Seq

Genomic Coordinates Forward (+)

10487313 .. 10488214

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGGCTAAGCGATCCCAGAAGTCGCTTGAGCAGCGGCGCAAAGACGCAGAGCCGACTAAAAAAAAAGGGAGGACCGATCCCTGACGAAGAGAGGTATGATGCCCAAGATGTACACCAAGTTCTCAGTCCCAATCAACCAAATCTTTTACCACCTCAAGGACAAGTCATGGTTCAAGCCACCGCCACTTATGAGAGAAGACACCTCCAAGATGGACCATACAAAGTTTTGCGCATTCCACAGAGGTTCGGGGCACACAACCAACGGCTACACTATATGGATGAAGTTCAAGCCATAGACGTTGTACCTGGACCAATCGTCGGCTTCACCGAGCAAAACGCAAAGGGAGTAGACTTTCCCCACAACGACGCCTTGGTGATTTCTATTCAACTGGCCCACGCCATCGTTGACAGAATTATGGTGGACAACGGCAGCTCAGTCAACATCCTACAACTATCAGTCATCCAGAAGATGAGCCTAGAAAGCATGATCAAATGCAAATCAGAGGTCATGACCGTATTCAACGGACTTACCTCAACTGCCATTGGCACCATCATGATCGACGTAACCAGCCCACCGATTATCTCATCCCAGACCTTCATGACCATTTACGACCCATCTCCCCATAATAGGATATTGTGCCAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

217

Amino Acids

23.98

Weight (kDa)

7.84

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05724 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761 FvH4_4g22761
prunus_persica	Prupe.1G216400_v2.0.a1 Prupe.6G166600_v2.0.a1
pyrus_communis	pycom13g06290 pycom16g14440
rosa_laevigata	RLG00000007107
rosa_multiflora	Rmu_sc0000145.1_g000003 Rmu_sc0000588.1_g000009
rosa_roxburghii	Rroxscaffold_3G00242120 Rroxscaffold_3G00242200 Rroxscaffold_3G00251940 Rroxscaffold_5G00346840
rosa_samantha	Rh4AG287800 Rh4BG293800 Rh4CG309400
rosa_wichuraiana	Rw0G009200 Rw1G013120 Rw1G021060 Rw2G026690 Rw2G028100 Rw2G038560 Rw6G016440 Rw7G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	2 cut(s)	36, 183
AclWI	GGATC	2 cut(s)	8, 73
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	2 cut(s)	114, 306
AfiI	CCNNNNNNNGG	3 cut(s)	158, 320, 630
AgsI	TTSAA	4 cut(s)	176, 290, 389, 523
AhdI	GACNNNNNGTC	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	1 cut(s)	435
AluI	AGCT	1 cut(s)	435
AlwI	GGATC	2 cut(s)	8, 73
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	33, 432
ArsI	GACNNNNNNTTYG	2 cut(s)	492, 524
AspLEI	GCGC	2 cut(s)	41, 234
AspS9I	GGNCC	4 cut(s)	74, 215, 311, 394
AsuHPI	GGTGA	2 cut(s)	319, 388
AvaII	GGWCC	3 cut(s)	74, 215, 311
BaeGI	GKGCMC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	45, 444
BccI	CCATC	4 cut(s)	206, 410, 560, 625
BceAI	ACGGC	2 cut(s)	281, 445
BciT130I	CCWGG	1 cut(s)	309
BclI	TGATCA	1 cut(s)	489
BfaI	CTAG	1 cut(s)	479
BisI	GCNGC	3 cut(s)	34, 37, 433
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	3 cut(s)	35, 38, 434
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	3 cut(s)	74, 215, 311
BmeRI	GACNNNNNGTC	1 cut(s)	317
BmgT120I	GGNCC	4 cut(s)	74, 215, 311, 394
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	49, 141
BsaHI	GRCGYC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 320, 630
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	4 cut(s)	286, 444, 462, 587
BseLI	CCNNNNNNNGG	3 cut(s)	158, 320, 630
BseMII	CTCAG	2 cut(s)	139, 450
BseNI	ACTGG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	45, 444
BshFI	GGCC	1 cut(s)	395
BshNI	GGYRCC	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	3 cut(s)	158, 320, 630
BsmFI	GGGAC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	4 cut(s)	13, 78, 489, 558
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	2 cut(s)	36, 183
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	2 cut(s)	138, 449
BspHI	TCATGA	3 cut(s)	510, 555, 600
BspLI	GGNNCC	1 cut(s)	550
BspPI	GGATC	2 cut(s)	8, 73
BspT107I	GGYRCC	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	4 cut(s)	13, 78, 489, 558
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	8, 125, 436
BstF5I	GGATG	4 cut(s)	286, 444, 462, 587
BstHHI	GCGC	2 cut(s)	41, 234
BstKTI	GATC	4 cut(s)	16, 81, 492, 561
BstMBI	GATC	4 cut(s)	13, 78, 489, 558
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 483
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	45, 444
BstV2I	GAAGAC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	395
BtsCI	GGATG	4 cut(s)	286, 444, 462, 587
CciI	TCATGA	3 cut(s)	510, 555, 600
CfoI	GCGC	2 cut(s)	41, 234
Cfr13I	GGNCC	4 cut(s)	74, 215, 311, 394
CseI	GACGC	2 cut(s)	55, 377
Csp6I	GTAC	2 cut(s)	113, 305
CviAII	CATG	5 cut(s)	169, 487, 511, 556, 601
CviQI	GTAC	2 cut(s)	113, 305
DdeI	CTNAG	3 cut(s)	8, 125, 436
DpnI	GATC	4 cut(s)	15, 80, 491, 560
DpnII	GATC	4 cut(s)	13, 78, 489, 558
DriI	GACNNNNNGTC	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	84
Eam1105I	GACNNNNNGTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	3 cut(s)	74, 215, 311
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	5 cut(s)	172, 490, 514, 559, 604
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	5 cut(s)	168, 486, 510, 555, 600
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	34, 37, 433
FokI	GGATG	4 cut(s)	293, 431, 449, 574
Fsp4HI	GCNGC	3 cut(s)	34, 37, 433
FspBI	CTAG	1 cut(s)	479
FspI	TGCGCA	1 cut(s)	233
GlaI	GCGC	2 cut(s)	40, 233
GluI	GCNGC	3 cut(s)	34, 37, 433
HaeIII	GGCC	1 cut(s)	395
HgaI	GACGC	2 cut(s)	55, 377
HhaI	GCGC	2 cut(s)	41, 234
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	5 cut(s)	172, 490, 514, 559, 604
Hin6I	GCGC	2 cut(s)	39, 232
HinP1I	GCGC	2 cut(s)	39, 232
HincII	GTYRAC	2 cut(s)	409, 442
HindII	GTYRAC	2 cut(s)	409, 442
HphI	GGTGA	2 cut(s)	319, 388
Hpy166II	GTNNAC	5 cut(s)	115, 352, 409, 424, 442
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	4 cut(s)	466, 511, 556, 601
Hpy8I	GTNNAC	5 cut(s)	115, 352, 409, 424, 442
Hpy99I	CGWCG	3 cut(s)	323, 371, 566
HpyAV	CCTTC	1 cut(s)	607
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	300, 564
HpyCH4V	TGCA	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 483
HpyF3I	CTNAG	3 cut(s)	8, 125, 436
HpySE526I	ACGT	2 cut(s)	300, 564
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	5 cut(s)	172, 490, 514, 559, 604
HspAI	GCGC	2 cut(s)	39, 232
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	13, 78, 489, 558
LpnPI	CCDG	8 cut(s)	31, 96, 294, 321, 377, 479, 583, 605
Lsp1109I	GCAGC	2 cut(s)	45, 444
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	300, 564
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	4 cut(s)	15, 80, 491, 560
MboI	GATC	4 cut(s)	13, 78, 489, 558
MboII	GAAGA	3 cut(s)	101, 210, 481
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	1 cut(s)	414
MnlI	CCTC	7 cut(s)	65, 87, 165, 215, 237, 499, 544
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	33, 483
NdeII	GATC	4 cut(s)	13, 78, 489, 558
NlaIII	CATG	5 cut(s)	172, 490, 514, 559, 604
NlaIV	GGNNCC	1 cut(s)	550
NsbI	TGCGCA	1 cut(s)	233
PagI	TCATGA	3 cut(s)	510, 555, 600
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	1 cut(s)	234
PkrI	GCNGC	3 cut(s)	35, 38, 434
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	4 cut(s)	74, 215, 311, 394
PsrI	GAACNNNNNNTAC	2 cut(s)	105, 137
RsaI	GTAC	2 cut(s)	114, 306
RsaNI	GTAC	2 cut(s)	113, 305
RseI	CAYNNNNRTG	1 cut(s)	554
SatI	GCNGC	3 cut(s)	34, 37, 433
Sau3AI	GATC	4 cut(s)	13, 78, 489, 558
Sau96I	GGNCC	4 cut(s)	74, 215, 311, 394
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	91
SinI	GGWCC	3 cut(s)	74, 215, 311
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	2 cut(s)	28, 156
SmoI	CTYRAG	2 cut(s)	28, 156
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	2 cut(s)	36, 183
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	303, 567
TaqI	TCGA	1 cut(s)	561
TaqII	GACCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	414
TatI	WGTACW	1 cut(s)	112
TauI	GCSGC	1 cut(s)	39
TseI	GCWGC	2 cut(s)	33, 432
TspDTI	ATGAA	2 cut(s)	297, 589
TspGWI	ACGGA	1 cut(s)	540
VpaK11BI	GGWCC	3 cut(s)	74, 215, 311
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.