Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004101

Physical Location & Seq

Genomic Coordinates Forward (+)

23286967 .. 23289575

Gene Structure 2609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTTTACTTACTTTAAACTCTTTGGTTCTGTTCCACCAAAATTAGAAATTGGCTTAACATTTAAGCACCAAAAACGTAATTTTGACCTACTATTTAGTGGAGAATTTCGTGGCAACGGAGAATTAGTCAGCGCACGAAGGAACTGGAGGGAAGCAGAGGCAGAGGGAGAGGGAGAGCCCACCCATTTATTCATAAATTATTTTCCCATTGATCATCGAGTTTGTCTTCACTCTTCAGTCATGGCCGAGATTGAGCTGAAAACAGCACCTGCTGATTTTCGATTCCCCACAACCAACCAAACTAGGCACTGTTTCACGCGTTACATTGAATTTCATAGGTGCGTCTCAGCAAAGGGTGAAGAATCGAATGAATGTGAGAAATTTGCCAAATATTACCGCTCTCTCTGCCCTGGTGAATGGATTGAGAAGTGGGAAGAGCAGAGGGCGGGCGGAACTTTCCCAGGTCCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

158

Amino Acids

18.32

Weight (kDa)

6.6

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX6B	PF02297	94 - 153	1.1e-21	Cytochrome oxidase c subunit VIb

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22450 AT4G28060 AT5G57815
fragaria_vesca	FvH4_4g10230 FvH4_4g10230 FvH4_5g36690
malus_domestica	MD08G1187700.v1.1 MD13G1274100.v1.1 MD15G1373600.v1.1 MD16G1261200.v1.1
prunus_persica	Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G098600_v2.0.a1 Prupe.1G522200_v2.0.a1
pyrus_communis	pycom08g16110 pycom15g33470 pycom16g22890
rosa_chinensis	RchiOBHm_Chr4g0405051 RchiOBHm_Chr7g0242671
rosa_laevigata	RLG00000000889
rosa_multiflora	Rmu_sc0000429.1_g000099 Rmu_sc0001744.1_g000012 Rmu_sc0017298.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222600
rosa_rugosa	Rorug04G0052600 Rorug07G0316100
rosa_samantha	Rh4AG127700 Rh7AG471100 Rh7BG441400 Rh7CG488100
rosa_wichuraiana	Rw0G005460 Rw4G010340 Rw7G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
Acc36I	ACCTGC	1 cut(s)	277
AccBSI	CCGCTC	1 cut(s)	399
AccII	CGCG	1 cut(s)	319
AciI	CCGC	3 cut(s)	397, 446, 450
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	3 cut(s)	104, 329, 380
AcuI	CTGAAG	1 cut(s)	219
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	409, 460
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	349
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	243
ApoI	RAATTY	3 cut(s)	104, 329, 380
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	368, 425
AvaII	GGWCC	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	411, 462
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	411, 462
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmrFI	CCNGG	2 cut(s)	411, 462
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	409, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	2 cut(s)	411, 462
BseDI	CCNNGG	2 cut(s)	409, 460
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	319
BshFI	GGCC	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	349
BsmBI	CGTCTC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	3 cut(s)	397, 446, 450
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	429
BsrBI	CCGCTC	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	409, 460
BssMI	GATC	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	411, 462
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	2 cut(s)	238, 429
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	346
BstFNI	CGCG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNI	CCWGG	2 cut(s)	411, 462
BstSCI	CCNGG	2 cut(s)	409, 460
BstUI	CGCG	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	307
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	1 cut(s)	331
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	4 cut(s)	54, 178, 245, 256
CviKI_1	RGCY	4 cut(s)	54, 178, 245, 256
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
DraI	TTTAAA	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	238, 429
EarI	CTCTTC	2 cut(s)	238, 429
EciI	GGCGGA	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	409, 460
EcoT38I	GRGCYC	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	1 cut(s)	244
FaiI	YATR	4 cut(s)	194, 242, 336, 472
FatI	CATG	1 cut(s)	240
FauI	CCCGC	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	133
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	245
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	282, 362
HphI	GGTGA	2 cut(s)	368, 425
Hpy166II	GTNNAC	2 cut(s)	6, 467
Hpy8I	GTNNAC	2 cut(s)	6, 467
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	1 cut(s)	346
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	211
LguI	GCTCTTC	1 cut(s)	429
LpnPI	CCDG	5 cut(s)	130, 282, 396, 423, 447
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	1 cut(s)	213
MbiI	CCGCTC	1 cut(s)	399
MboI	GATC	1 cut(s)	211
MboII	GAAGA	4 cut(s)	218, 225, 371, 446
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	8 cut(s)	41, 48, 79, 104, 122, 196, 329, 380
MluI	ACGCGT	1 cut(s)	317
MnlI	CCTC	5 cut(s)	141, 151, 157, 163, 435
MseI	TTAA	3 cut(s)	15, 56, 63
MspR9I	CCNGG	2 cut(s)	411, 462
MvaI	CCWGG	2 cut(s)	411, 462
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	405
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	282, 362
Psp6I	CCWGG	2 cut(s)	409, 460
PspGI	CCWGG	2 cut(s)	409, 460
PspPI	GGNCC	1 cut(s)	464
PstNI	CAGNNNCTG	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	15, 56, 63
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	411, 462
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	6 cut(s)	79, 90, 258, 271, 341, 466
SinI	GGWCC	1 cut(s)	464
Sse9I	AATT	8 cut(s)	41, 48, 79, 104, 122, 196, 329, 380
SsiI	CCGC	3 cut(s)	397, 446, 450
SspI	AATATT	1 cut(s)	392
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	409, 460
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	3 cut(s)	217, 280, 365
TasI	AATT	8 cut(s)	41, 48, 79, 104, 122, 196, 329, 380
TfiI	GAWTC	2 cut(s)	282, 362
Tru1I	TTAA	3 cut(s)	15, 56, 63
Tru9I	TTAA	3 cut(s)	15, 56, 63
TscAI	CASTG	1 cut(s)	314
TspDTI	ATGAA	3 cut(s)	181, 323, 384
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	3 cut(s)	104, 329, 380
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.