Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002288

Physical Location & Seq

Genomic Coordinates Forward (+)

983507 .. 989010

Gene Structure 5504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g01450.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

ATGGGGAAAAACAAGGTTACGGACGAACTGCTGTCCACCGTCCGATCAATCGTCGACTCGGGATACTCCGACATGGACATTATCAGAGCCCTCCACATGGCCAACAACGACGTCACCGCCGCAATCAACATAATCTTTGACACGCCCAGTTTCAAATTGAAGGAAAGACCACCGGCTTCTCGGAAGAATCCCCAAATTTTGAGCTCCGAGGTCGTAAATTTGAAGCAAAATGGGGGTCAGAAAAGTAATTGCACTTTGGGTACCGAAGGAAATGGGAGTAGTTGCCCCAGTAATTCAGGGGACGACGTGGTTGAAGAAGTCGCGGTTGCACGGTGCGAGAGCTCGGCTGGGAGCGAGTGGTGGTTTGTGGGCAGCAGTGAAGTTTCGGGGTTATCAACGTGTAAAGGTAGGAGGCTTAGCCCTGGAGACGAAGTGGAATTTACTTTTCCAACAAAGAGCAGTTCAACATCTCCGTCACCCGGCAAGGTTTTTGGGAGGGGACGGCAGGCAGCTGCTTGTTCGGAGATTGTGAGGTTTTCAACGAAAGATTCAGGAGAGATTGGTAGAATTCCGAAGGAATGGGCTCGGTGTTTATTGCCACTTGTGAGGGATAAGAAGGTTAGAATTGAGGGGCATTGCAAATCTGCTCCTGATGTGTTGAGCATTATGGACACCATTCTTTTGTCATTAAGTGTGCATATCAATAGTTCAATGTTCCTTAAGCAAAACAAGACCTCACTTAAGGCAGCCAATAATTCCACTGACGAAACAGTGGTTCACCCTCTTCCAACATTGTTCCGGTTGCTAGGACTGACTCCTTTCAAGAAGGCAGAATTTACTCCGAGTGACTTGTACACGAGAAAGCGCCCTTTGGACCCAAAGGATAGCTTTGGACTTTGTGCCCCAGTATTACGTGCCAATAAGCCTAAAATCCCTGGTCAAAATGGAGATGAAGTTGAAAATGAGGAGTCTATTTCAGATGCTGATCTTGAAAACATTGTTGGTATTGGTGACAGCTCTGAGCTAGAGGAAATGGATCCCCCAGGTACACTTCTGTGTGAACTTCGTCCGTACCAAAAGCAGGCTCTTCATTGGATGATCCAACTGGAAAAGGGACACTGCATGGATGAGGGAGCAATGACTCTTCACCCTTGTTGGGAGGCATATCGTCTTGCAGACAAGAGGGACCGTGTTATCTATTTGAATGCATTTTCTGGTGATGCAACAGCAGAATTTCCAAGCACACTTCAAATGGCCAGAGGAGGAATTCTGGCTGATGCTATGGGCTTGGGGAAGACCATTATGACGATATCGCTCCTTCTTACTAATTCAGGACATGGATTATCAGTTAGTTACCCTACAAGCCAGTCTTCCAGTGAAGATATTGAAGTCCCCGACATTTCAGACTACTCATCAAACCTACCAAAGAAGGTCCCAAAATTTTCAGGATTTGATAAGTTGTTGAAGCAAAAAAACACGGTTGGGGATGGTGGTTGTTTGATTATATGTCCTATGACTCTTCTAGGCCAGTGGAAGGCAGAGATTGAAACTCATGCTAAACCTGGGTCTCTATTGGTATATGTTCATTATGGACAAAGTAGACCGAAGGATGCAAAATTTTTAGTTCAAAGTGATGTCGTAATCACTACATATGGAGTGTTAGCCTCTGAATATTCTGCTGAGAATCCAAAGGAAAATGGGGGACTTTACTCGGTTAGTTGGTTTAGAGTGGTTCTTGATGAGGCGCATACCATAAAATCCTCAAAAAGCCAAATTTCCATTGCTGCTGCTGCTTTAGTTGCTGGTCGGCGATGGTGTCTTACTGGCACACCCATACAGAACAACCTGGAGGACGTTTACAGTCTTCTCCGGTTTTTGAGGGTAGAACCTTGGGGAAACTGGGCATGGTGGAATAAACTCATACAAAAACCTTTTGAGGAGGGTGATGAGAGAGGATTAAAGTTGGTTCAGTCTATCTTAAAGCCAATCATGTTAAGGAGAACAAAGTTTAGCACAGACCGCGAAGGCAGGCCAATTTTAGTTCTTCCTCCAGCTGATATTCAGGTGATTTACTGTGAACTCACAGAAGCTGAAAAAGACTTCTACGAGGCCCTCTTTAAAAGATCAAAGGTGAAGTTTGATCAATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCATCCATATTGGAGTTGCTTTTACGCCTTCGCCAGTGTTGTGATCATCCATTTCTTGTGATGAGCCGAGGTGATACACAAGACTTTTCTGATCTGGATAAGCTAGCTAGACGTTTCCTTAAAGGAAAACAGAATTCTGTGGAAGGGGAAGCCAAAGATCTGCCTTCACGTGCTTATGTTCAAGAAGTTGTAGAAGAAATACGTAAGGGGGAACAGGGAGAGTGTCCAATATGTCTTGAAGCCTTTGAAGATGCAGTGTTAACACCTTGTGCTCACCGCTTATGCCGTGAATGTCTCTTGGCAAGTTGGCGGAACTCAAGTTCTGGTCTCTGTCCTGTTTGTAGGAAGACCATCAGTAAGCAAGATCTTATTACAGCACCCACTGAGAGTCGGTTTCAGGTTGATGTTGAGAAAAACTGGGTGGAATCATCCAAAGTTGTCATTCTTTTGCGTGAACTTGAATCTCTTCGCTCATCAGGCACAAAAAGCATTGTCTTCAGCCAGTGGACGGCTTTTCTGGACCTCTTGCAGGTCCCTCTTTCTAGGAGTAACATTCCATTTCTTCGCCTTGATGGGACTCTGAATCAACAGCAGCGTGAGAAAGTGTTAAAACAGTTTTCAGAAGATAGTGACATCCAGGTGTTGCTAATGTCACTGAAGGCTGGAGGAGTTGGAATAAATCTGACAGCAGCATCAAATGCTTTTGTCTTGGATCCATGGTGGAATCCAGCAGTCGAGGAACAAGCTGTCATGCGTATTCATCGCATTGGACAAACAAAGAGGGTGATGATCAAGCGGTTTATCATGAAGGGAACGGTTGAGGAACGAATGGAAGCAGTGCAAGCACGTAAACAGCGACTGATTTCCGGAGCCTTGACGGACCAAGAAGTTCGAACAGCTCGCATAGAGGAACTAAAGATGCTTTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

1037

Amino Acids

115.37

Weight (kDa)

6.95

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22750
fragaria_vesca	FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660
malus_domestica	MD17G1018000.v1.1
prunus_persica	Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1
pyrus_communis	pycom17g01450
rosa_chinensis	RchiOBHm_Chr2g0174191 RchiOBHm_Chr4g0410751
rosa_laevigata	RLG00000022255 RLG00000022256 RLG00000029588
rosa_multiflora	Rmu_sc0000954.1_g000002 Rmu_ssc0000198.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078340 Rroxscaffold_2G00078370 Rroxscaffold_5G00355500
rosa_rugosa	Rorug02G0575800 Rorug02G0575900 Rorug02G0576000 Rorug04G0376700
rosa_samantha	Rh2AG655200 Rh2BG666400 Rh2CG630600 Rh2DG681000 Rh4AG162800 Rh4BG161900 Rh4BG162000 Rh4DG158500 Rh7CG048600
rosa_wichuraiana	Rw2G053780 Rw4G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
Acc36I	ACCTGC	1 cut(s)	2698
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	260
AccI	GTMKAC	2 cut(s)	54, 1600
AccII	CGCG	2 cut(s)	323, 2022
AccIII	TCCGGA	1 cut(s)	3044
AciI	CCGC	7 cut(s)	117, 120, 323, 2020, 2455, 2488, 2974
AclWI	GGATC	5 cut(s)	1031, 1044, 1093, 2885, 2898
AcoI	YGGCCR	2 cut(s)	99, 1254
AcuI	CTGAAG	2 cut(s)	2659, 2855
AcvI	CACGTG	1 cut(s)	2348
AcyI	GRCGYC	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	2447
AfaI	GTAC	4 cut(s)	262, 854, 1048, 1073
AfiI	CCNNNNNNNGG	7 cut(s)	97, 479, 1081, 1156, 1534, 2686, 2707
AflII	CTTAAG	2 cut(s)	719, 740
AflIII	ACRYGT	1 cut(s)	398
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	6 cut(s)	421, 934, 1042, 1561, 1845, 2814
AjuI	GAANNNNNNNTTGG	2 cut(s)	984, 1016
AleI	CACNNNNGTG	1 cut(s)	1054
AloI	GAACNNNNNNTCC	2 cut(s)	2482, 2514
Alw21I	GWGCWC	3 cut(s)	206, 344, 2452
Alw26I	GTCTC	4 cut(s)	420, 1572, 2477, 2510
AlwI	GGATC	5 cut(s)	1031, 1044, 1093, 2885, 2898
AlwNI	CAGNNNCTG	3 cut(s)	983, 2090, 3037
Ama87I	CYCGRG	1 cut(s)	58
Aor13HI	TCCGGA	1 cut(s)	3044
AoxI	GGCC	5 cut(s)	99, 1254, 1525, 2030, 2109
ApeKI	GCWGC	9 cut(s)	372, 509, 512, 746, 1784, 1787, 1790, 2770, 2867
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
Asp700I	GAANNNNTTC	1 cut(s)	2643
Asp718I	GGTACC	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	867, 1747
AspS9I	GGNCC	7 cut(s)	874, 1186, 1432, 2110, 2698, 2710, 3058
AsuC2I	CCSGG	1 cut(s)	480
AsuII	TTCGAA	1 cut(s)	3070
AsuNHI	GCTAGC	1 cut(s)	2281
AvaI	CYCGRG	1 cut(s)	58
AvaII	GGWCC	6 cut(s)	874, 1186, 1432, 2698, 2710, 3058
BaeGI	GKGCMC	1 cut(s)	904
BalI	TGGCCA	2 cut(s)	101, 1256
BamHI	GGATCC	2 cut(s)	1036, 2890
BanI	GGYRCC	1 cut(s)	260
BanII	GRGCYC	4 cut(s)	91, 206, 344, 586
BauI	CACGAG	1 cut(s)	856
BbrPI	CACGTG	1 cut(s)	2348
BbsI	GAAGAC	5 cut(s)	1301, 1362, 1856, 2531, 2665
Bbv12I	GWGCWC	3 cut(s)	206, 344, 2452
BbvI	GCAGC	9 cut(s)	384, 499, 521, 758, 1771, 1774, 1777, 2782, 2879
BccI	CCATC	4 cut(s)	1481, 1806, 2537, 2744
BceAI	ACGGC	3 cut(s)	518, 2448, 2703
BciT130I	CCWGG	6 cut(s)	423, 936, 1044, 1563, 1847, 2816
BciVI	GTATCC	1 cut(s)	56
BclI	TGATCA	3 cut(s)	2140, 2221, 2967
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	4 cut(s)	420, 1572, 2477, 2510
BfaI	CTAG	6 cut(s)	806, 1025, 1523, 2282, 2286, 2721
BfoI	RGCGCY	1 cut(s)	868
BfrI	CTTAAG	2 cut(s)	719, 740
BfuAI	ACCTGC	1 cut(s)	2698
BfuI	GTATCC	1 cut(s)	56
BglII	AGATCT	2 cut(s)	2335, 2542
BlpI	GCTNAGC	1 cut(s)	416
Bme1390I	CCNGG	7 cut(s)	423, 480, 936, 1044, 1563, 1847, 2816
Bme18I	GGWCC	6 cut(s)	874, 1186, 1432, 2698, 2710, 3058
BmeT110I	CYCGRG	1 cut(s)	58
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	7 cut(s)	874, 1186, 1432, 2110, 2698, 2710, 3058
BmiI	GGNNCC	8 cut(s)	262, 876, 1038, 1187, 1434, 2712, 2892, 3049
BmrFI	CCNGG	7 cut(s)	423, 480, 936, 1044, 1563, 1847, 2816
BmrI	ACTGGG	5 cut(s)	141, 282, 899, 1909, 2605
BmsI	GCATC	8 cut(s)	970, 1210, 1267, 1600, 2189, 2419, 2879, 3087
BmtI	GCTAGC	1 cut(s)	2285
BmuI	ACTGGG	5 cut(s)	141, 282, 899, 1909, 2605
BpiI	GAAGAC	5 cut(s)	1301, 1362, 1856, 2531, 2665
BpmI	CTGGAG	4 cut(s)	444, 1868, 2034, 2862
Bpu1102I	GCTNAGC	1 cut(s)	416
Bpu14I	TTCGAA	1 cut(s)	3070
BpuEI	CTTGAG	1 cut(s)	2479
BpuMI	CCSGG	1 cut(s)	480
BsaAI	YACGTR	4 cut(s)	914, 2348, 2381, 3026
BsaBI	GATNNNNATC	1 cut(s)	984
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	2 cut(s)	1572, 2510
BsaJI	CCNNGG	8 cut(s)	207, 421, 934, 1042, 1562, 1889, 2245, 2894
BsaWI	WCCGGW	3 cut(s)	798, 1869, 3044
BsaXI	ACNNNNNCTCC	4 cut(s)	417, 447, 939, 969
Bsc4I	CCNNNNNNNGG	7 cut(s)	97, 479, 1081, 1156, 1534, 2686, 2707
Bse118I	RCCGGY	1 cut(s)	172
Bse3DI	GCAATG	3 cut(s)	634, 1143, 1779
Bse8I	GATNNNNATC	1 cut(s)	984
BseAI	TCCGGA	1 cut(s)	3044
BseBI	CCWGG	6 cut(s)	423, 936, 1044, 1563, 1847, 2816
BseDI	CCNNGG	8 cut(s)	207, 421, 934, 1042, 1562, 1889, 2245, 2894
BseGI	GGATG	8 cut(s)	1101, 1132, 1492, 1615, 2180, 2224, 2606, 2811
BseJI	GATNNNNATC	1 cut(s)	984
BseLI	CCNNNNNNNGG	7 cut(s)	97, 479, 1081, 1156, 1534, 2686, 2707
BseMI	GCAATG	3 cut(s)	634, 1143, 1779
BseMII	CTCAG	3 cut(s)	1011, 1671, 2553
BseRI	GAGGAG	4 cut(s)	980, 1275, 1952, 2859
BseSI	GKGCMC	1 cut(s)	904
BseXI	GCAGC	9 cut(s)	384, 499, 521, 758, 1771, 1774, 1777, 2782, 2879
BseYI	CCCAGC	1 cut(s)	347
Bsh1236I	CGCG	2 cut(s)	323, 2022
BshFI	GGCC	5 cut(s)	101, 1256, 1527, 2032, 2111
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	3 cut(s)	206, 344, 2452
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	5 cut(s)	173, 480, 799, 1870, 3045
BslFI	GGGAC	9 cut(s)	314, 513, 1128, 1199, 1376, 1418, 1716, 2696, 2767
BslI	CCNNNNNNNGG	7 cut(s)	97, 479, 1081, 1156, 1534, 2686, 2707
BsmAI	GTCTC	4 cut(s)	420, 1572, 2477, 2510
BsmBI	CGTCTC	1 cut(s)	420
BsmFI	GGGAC	9 cut(s)	314, 513, 1128, 1199, 1376, 1418, 1716, 2696, 2767
BsmI	GAATGC	1 cut(s)	1210
BsnI	GGCC	5 cut(s)	101, 1256, 1527, 2032, 2111
Bso31I	GGTCTC	2 cut(s)	1572, 2510
BsoBI	CYCGRG	1 cut(s)	58
Bsp119I	TTCGAA	1 cut(s)	3070
Bsp1286I	GDGCHC	6 cut(s)	91, 206, 344, 586, 904, 2452
Bsp13I	TCCGGA	1 cut(s)	3044
Bsp1407I	TGTACA	1 cut(s)	852
Bsp1720I	GCTNAGC	1 cut(s)	416
Bsp19I	CCATGG	1 cut(s)	2894
BspACI	CCGC	7 cut(s)	117, 120, 323, 2020, 2455, 2488, 2974
BspANI	GGCC	5 cut(s)	101, 1256, 1527, 2032, 2111
BspCNI	CTCAG	3 cut(s)	1012, 1672, 2554
BspEI	TCCGGA	1 cut(s)	3044
BspFNI	CGCG	2 cut(s)	323, 2022
BspHI	TCATGA	1 cut(s)	2982
BspLI	GGNNCC	8 cut(s)	262, 876, 1038, 1187, 1434, 2712, 2892, 3049
BspMI	ACCTGC	1 cut(s)	2698
BspOI	GCTAGC	1 cut(s)	2285
BspPI	GGATC	5 cut(s)	1031, 1044, 1093, 2885, 2898
BspQI	GCTCTTC	1 cut(s)	1092
BspT104I	TTCGAA	1 cut(s)	3070
BspT107I	GGYRCC	1 cut(s)	260
BspTI	CTTAAG	2 cut(s)	719, 740
BspTNI	GGTCTC	2 cut(s)	1572, 2510
BsrDI	GCAATG	3 cut(s)	634, 1143, 1779
BsrFI	RCCGGY	1 cut(s)	172
BsrGI	TGTACA	1 cut(s)	852
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	8 cut(s)	207, 421, 934, 1042, 1562, 1889, 2245, 2894
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	856
BssT1I	CCWWGG	2 cut(s)	1889, 2894
Bst2BI	CACGAG	1 cut(s)	856
Bst2UI	CCWGG	6 cut(s)	423, 936, 1044, 1563, 1847, 2816
Bst4CI	ACNGT	9 cut(s)	40, 333, 772, 1190, 1480, 1862, 2075, 2793, 2995
Bst6I	CTCTTC	5 cut(s)	789, 1092, 1149, 1524, 2649
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	2 cut(s)	719, 740
BstAPI	GCANNNNNTGC	1 cut(s)	2876
BstAUI	TGTACA	1 cut(s)	852
BstBAI	YACGTR	4 cut(s)	914, 2348, 2381, 3026
BstBI	TTCGAA	1 cut(s)	3070
BstC8I	GCNNGC	6 cut(s)	507, 1083, 2030, 2283, 3021, 3079
BstDEI	CTNAG	4 cut(s)	416, 1020, 1680, 2562
BstDSI	CCRYGG	1 cut(s)	2894
BstENI	CCTNNNNNAGG	1 cut(s)	2705
BstF5I	GGATG	8 cut(s)	1101, 1132, 1492, 1615, 2180, 2224, 2606, 2811
BstFNI	CGCG	2 cut(s)	323, 2022
BstH2I	RGCGCY	1 cut(s)	868
BstHHI	GCGC	2 cut(s)	867, 1747
BstMAI	GTCTC	4 cut(s)	420, 1572, 2477, 2510
BstMWI	GCNNNNNNNGC	7 cut(s)	1790, 1799, 2019, 2655, 2664, 2876, 3020
BstNI	CCWGG	6 cut(s)	423, 936, 1044, 1563, 1847, 2816
BstSCI	CCNGG	7 cut(s)	421, 478, 934, 1042, 1561, 1845, 2814
BstSLI	GKGCMC	1 cut(s)	904
BstSNI	TACGTA	1 cut(s)	2381
BstUI	CGCG	2 cut(s)	323, 2022
BstV1I	GCAGC	9 cut(s)	384, 499, 521, 758, 1771, 1774, 1777, 2782, 2879
BstV2I	GAAGAC	5 cut(s)	1301, 1362, 1856, 2531, 2665
BstX2I	RGATCY	4 cut(s)	1036, 2335, 2542, 2890
BstYI	RGATCY	4 cut(s)	1036, 2335, 2542, 2890
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	5 cut(s)	101, 1256, 1527, 2032, 2111
BtgI	CCRYGG	1 cut(s)	2894
BtgZI	GCGATG	2 cut(s)	1825, 2924
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	8 cut(s)	1101, 1132, 1492, 1615, 2180, 2224, 2606, 2811
BtsI	GCAGTG	4 cut(s)	382, 1117, 2439, 3021
BveI	ACCTGC	1 cut(s)	2698
Cac8I	GCNNGC	6 cut(s)	507, 1083, 2030, 2283, 3021, 3079
CaiI	CAGNNNCTG	3 cut(s)	983, 2090, 3037
CciI	TCATGA	1 cut(s)	2982
CfoI	GCGC	2 cut(s)	867, 1747
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	7 cut(s)	874, 1186, 1432, 2110, 2698, 2710, 3058
Csp6I	GTAC	4 cut(s)	261, 853, 1047, 1072
CviQI	GTAC	4 cut(s)	261, 853, 1047, 1072
DdeI	CTNAG	4 cut(s)	416, 1020, 1680, 2562
DraI	TTTAAA	1 cut(s)	2119
DraIII	CACNNNGTG	1 cut(s)	2447
EaeI	YGGCCR	2 cut(s)	99, 1254
Eam1104I	CTCTTC	5 cut(s)	789, 1092, 1149, 1524, 2649
EarI	CTCTTC	5 cut(s)	789, 1092, 1149, 1524, 2649
EciI	GGCGGA	1 cut(s)	2503
Ecl136II	GAGCTC	2 cut(s)	204, 342
Eco105I	TACGTA	1 cut(s)	2381
Eco130I	CCWWGG	2 cut(s)	1889, 2894
Eco24I	GRGCYC	4 cut(s)	91, 206, 344, 586
Eco31I	GGTCTC	2 cut(s)	1572, 2510
Eco32I	GATATC	1 cut(s)	1311
Eco47I	GGWCC	6 cut(s)	874, 1186, 1432, 2698, 2710, 3058
Eco53kI	GAGCTC	2 cut(s)	204, 342
Eco57I	CTGAAG	2 cut(s)	2659, 2855
Eco72I	CACGTG	1 cut(s)	2348
Eco88I	CYCGRG	1 cut(s)	58
EcoICRI	GAGCTC	2 cut(s)	204, 342
EcoNI	CCTNNNNNAGG	1 cut(s)	2705
EcoO109I	RGGNCCY	3 cut(s)	1432, 2110, 2710
EcoRI	GAATTC	3 cut(s)	567, 1266, 2311
EcoRII	CCWGG	6 cut(s)	421, 934, 1042, 1561, 1845, 2814
EcoRV	GATATC	1 cut(s)	1311
EcoT14I	CCWWGG	2 cut(s)	1889, 2894
EcoT22I	ATGCAT	2 cut(s)	1210, 2182
EcoT38I	GRGCYC	4 cut(s)	91, 206, 344, 586
ErhI	CCWWGG	2 cut(s)	1889, 2894
Esp3I	CGTCTC	1 cut(s)	420
FalI	AAGNNNNNCTT	4 cut(s)	872, 904, 1354, 1386
FaqI	GGGAC	9 cut(s)	314, 513, 1128, 1199, 1376, 1418, 1716, 2696, 2767
FauNDI	CATATG	1 cut(s)	1651
FbaI	TGATCA	3 cut(s)	2140, 2221, 2967
FblI	GTMKAC	2 cut(s)	54, 1600
FokI	GGATG	8 cut(s)	1108, 1139, 1499, 1622, 2167, 2211, 2593, 2798
FriOI	GRGCYC	4 cut(s)	91, 206, 344, 586
FspBI	CTAG	6 cut(s)	806, 1025, 1523, 2282, 2286, 2721
GlaI	GCGC	2 cut(s)	866, 1746
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	4 cut(s)	444, 1868, 2034, 2862
HaeII	RGCGCY	1 cut(s)	868
HaeIII	GGCC	5 cut(s)	101, 1256, 1527, 2032, 2111
HapII	CCGG	5 cut(s)	173, 480, 799, 1870, 3045
HhaI	GCGC	2 cut(s)	867, 1747
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	2 cut(s)	865, 1745
HinP1I	GCGC	2 cut(s)	865, 1745
HincII	GTYRAC	2 cut(s)	55, 2439
HindII	GTYRAC	2 cut(s)	55, 2439
HpaI	GTTAAC	1 cut(s)	2439
HpaII	CCGG	5 cut(s)	173, 480, 799, 1870, 3045
Hpy99I	CGWCG	3 cut(s)	56, 113, 308
HpyCH4III	ACNGT	9 cut(s)	40, 333, 772, 1190, 1480, 1862, 2075, 2793, 2995
HpyCH4IV	ACGT	9 cut(s)	111, 306, 398, 913, 1854, 2290, 2347, 2380, 3025
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1790, 1799, 2019, 2655, 2664, 2876, 3020
HpyF3I	CTNAG	4 cut(s)	416, 1020, 1680, 2562
HpySE526I	ACGT	9 cut(s)	111, 306, 398, 913, 1854, 2290, 2347, 2380, 3025
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	2 cut(s)	865, 1745
Kpn2I	TCCGGA	1 cut(s)	3044
KpnI	GGTACC	1 cut(s)	264
Ksp22I	TGATCA	3 cut(s)	2140, 2221, 2967
KspAI	GTTAAC	1 cut(s)	2439
LguI	GCTCTTC	1 cut(s)	1092
LmnI	GCTCC	6 cut(s)	209, 351, 652, 1133, 1320, 3047
Lsp1109I	GCAGC	9 cut(s)	384, 499, 521, 758, 1771, 1774, 1777, 2782, 2879
LweI	GCATC	8 cut(s)	970, 1210, 1267, 1600, 2189, 2419, 2879, 3087
MaeI	CTAG	6 cut(s)	806, 1025, 1523, 2282, 2286, 2721
MaeII	ACGT	9 cut(s)	111, 306, 398, 913, 1854, 2290, 2347, 2380, 3025
MaeIII	GTNAC	9 cut(s)	16, 112, 474, 845, 1010, 1352, 2726, 2807, 2829
MflI	RGATCY	4 cut(s)	1036, 2335, 2542, 2890
MhlI	GDGCHC	6 cut(s)	91, 206, 344, 586, 904, 2452
MlsI	TGGCCA	2 cut(s)	101, 1256
MluNI	TGGCCA	2 cut(s)	101, 1256
MlyI	GAGTC	7 cut(s)	50, 808, 977, 1135, 1510, 2575, 2749
MmeI	TCCRAC	5 cut(s)	93, 473, 812, 1126, 2830
Mox20I	TGGCCA	2 cut(s)	101, 1256
Mph1103I	ATGCAT	2 cut(s)	1210, 2182
MroI	TCCGGA	1 cut(s)	3044
MroXI	GAANNNNTTC	1 cut(s)	2643
MscI	TGGCCA	2 cut(s)	101, 1256
MslI	CAYNNNNRTG	3 cut(s)	1054, 2175, 2816
Msp20I	TGGCCA	2 cut(s)	101, 1256
MspA1I	CMGCKG	2 cut(s)	512, 2054
MspCI	CTTAAG	2 cut(s)	719, 740
MspI	CCGG	5 cut(s)	173, 480, 799, 1870, 3045
MspR9I	CCNGG	7 cut(s)	423, 480, 936, 1044, 1563, 1847, 2816
Mva1269I	GAATGC	1 cut(s)	1210
MvaI	CCWGG	6 cut(s)	423, 936, 1044, 1563, 1847, 2816
MvnI	CGCG	2 cut(s)	323, 2022
MwoI	GCNNNNNNNGC	7 cut(s)	1790, 1799, 2019, 2655, 2664, 2876, 3020
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	2894
NdeI	CATATG	1 cut(s)	1651
NheI	GCTAGC	1 cut(s)	2281
NlaIV	GGNNCC	8 cut(s)	262, 876, 1038, 1187, 1434, 2712, 2892, 3049
NmeAIII	GCCGAG	2 cut(s)	323, 2270
NmuCI	GTSAC	6 cut(s)	112, 474, 845, 1010, 2807, 2829
NsiI	ATGCAT	2 cut(s)	1210, 2182
NspV	TTCGAA	1 cut(s)	3070
OliI	CACNNNNGTG	1 cut(s)	1054
PagI	TCATGA	1 cut(s)	2982
PciSI	GCTCTTC	1 cut(s)	1092
PcsI	WCGNNNNNNNCGW	1 cut(s)	3031
PctI	GAATGC	1 cut(s)	1210
PdmI	GAANNNNTTC	1 cut(s)	2643
PfeI	GAWTC	7 cut(s)	187, 548, 1684, 2603, 2639, 2761, 2902
PleI	GAGTC	7 cut(s)	50, 808, 976, 1135, 1510, 2574, 2749
PmaCI	CACGTG	1 cut(s)	2348
PmlI	CACGTG	1 cut(s)	2348
PpsI	GAGTC	7 cut(s)	50, 808, 976, 1135, 1510, 2574, 2749
Ppu21I	YACGTR	4 cut(s)	914, 2348, 2381, 3026
PpuMI	RGGWCCY	2 cut(s)	1432, 2710
Psp124BI	GAGCTC	2 cut(s)	206, 344
Psp5II	RGGWCCY	2 cut(s)	1432, 2710
Psp6I	CCWGG	6 cut(s)	421, 934, 1042, 1561, 1845, 2814
PspCI	CACGTG	1 cut(s)	2348
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	6 cut(s)	421, 934, 1042, 1561, 1845, 2814
PspN4I	GGNNCC	8 cut(s)	262, 876, 1038, 1187, 1434, 2712, 2892, 3049
PspPI	GGNCC	7 cut(s)	874, 1186, 1432, 2110, 2698, 2710, 3058
PspPPI	RGGWCCY	2 cut(s)	1432, 2710
PstNI	CAGNNNCTG	3 cut(s)	983, 2090, 3037
PsuI	RGATCY	4 cut(s)	1036, 2335, 2542, 2890
PvuII	CAGCTG	2 cut(s)	512, 2054
RsaI	GTAC	4 cut(s)	262, 854, 1048, 1073
RsaNI	GTAC	4 cut(s)	261, 853, 1047, 1072
RseI	CAYNNNNRTG	3 cut(s)	1054, 2175, 2816
SacI	GAGCTC	2 cut(s)	206, 344
SalI	GTCGAC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	1092
Sau96I	GGNCC	7 cut(s)	874, 1186, 1432, 2110, 2698, 2710, 3058
SchI	GAGTC	7 cut(s)	50, 808, 977, 1135, 1510, 2575, 2749
ScrFI	CCNGG	7 cut(s)	423, 480, 936, 1044, 1563, 1847, 2816
SduI	GDGCHC	6 cut(s)	91, 206, 344, 586, 904, 2452
SfaNI	GCATC	8 cut(s)	970, 1210, 1267, 1600, 2189, 2419, 2879, 3087
SfuI	TTCGAA	1 cut(s)	3070
SinI	GGWCC	6 cut(s)	874, 1186, 1432, 2698, 2710, 3058
SmiMI	CAYNNNNRTG	3 cut(s)	1054, 2175, 2816
SmlI	CTYRAG	3 cut(s)	719, 740, 2494
SmoI	CTYRAG	3 cut(s)	719, 740, 2494
SnaBI	TACGTA	1 cut(s)	2381
SsiI	CCGC	7 cut(s)	117, 120, 323, 2020, 2455, 2488, 2974
SspI	AATATT	1 cut(s)	1673
SspMI	CTAG	6 cut(s)	806, 1025, 1523, 2282, 2286, 2721
SstI	GAGCTC	2 cut(s)	206, 344
StyD4I	CCNGG	7 cut(s)	421, 478, 934, 1042, 1561, 1845, 2814
StyI	CCWWGG	2 cut(s)	1889, 2894
TaaI	ACNGT	9 cut(s)	40, 333, 772, 1190, 1480, 1862, 2075, 2793, 2995
TaiI	ACGT	9 cut(s)	114, 309, 401, 916, 1857, 2293, 2350, 2383, 3028
TaqI	TCGA	3 cut(s)	54, 2913, 3070
TaqII	GACCGA	1 cut(s)	1618
TatI	WGTACW	1 cut(s)	852
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	7 cut(s)	187, 548, 1684, 2603, 2639, 2761, 2902
TseFI	GTSAC	6 cut(s)	112, 474, 845, 1010, 2807, 2829
TseI	GCWGC	9 cut(s)	372, 509, 512, 746, 1784, 1787, 1790, 2770, 2867
Tsp45I	GTSAC	6 cut(s)	112, 474, 845, 1010, 2807, 2829
TspDTI	ATGAA	6 cut(s)	966, 1079, 1574, 2159, 2927, 2999
TspGWI	ACGGA	4 cut(s)	35, 462, 1059, 3071
Vha464I	CTTAAG	2 cut(s)	719, 740
VpaK11BI	GGWCC	6 cut(s)	874, 1186, 1432, 2698, 2710, 3058
XagI	CCTNNNNNAGG	1 cut(s)	2705
XmiI	GTMKAC	2 cut(s)	54, 1600
XmnI	GAANNNNTTC	1 cut(s)	2643
XspI	CTAG	6 cut(s)	806, 1025, 1523, 2282, 2286, 2721
ZraI	GACGTC	1 cut(s)	112
Zsp2I	ATGCAT	2 cut(s)	1210, 2182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.