Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002288

Physical Location & Seq

Genomic Coordinates Forward (+)

1668401 .. 1675548

Gene Structure 7148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2073 bp

ATGTTGCGAGCCCTGAAGTCGCGAATTCGAAGCCGAACGGCAGTGATTGCCCCGCCAGTTCAGGCGATGAAGAAGTCGTCTGTGACGTGTAGAGGGAGGAGGATCAAGGCCGGAGACGAAGTGGATTTCACATTTCCTTTGAAGATTTGGCCGTCTCCCGGCAGGGTACTTTTTTTTTCGGAGGGGACGGCCGGCGTGTTCGGAGATTGTGGGGTTCTCCACGGCCGATTCCGGAGAGTGTGTATATCAACAGTTCTATGTTCCTTAAGCAAAAGCAGACCTCCCTTAAGGCGGCCAGTTTTCTTTTCCGAACAGGACAGGACAGTTCTGGGCTTTGTGCCTCAATTGTACTTGGCAAATAAGCATAAAAATCCTACTAGAAATGAAGATGAAGTTGAAAACAAGGAATGTATTTCGGATGCTGAGGTTGATAACATCGTTGGGGTTGGAGATAGCTCTGAGTTAGAGGAAATGGATCTTCCTGCTGCACTTCTGAGGGGCCGTATTATATATTTGAATGCATTTTCTGGTGACGCAACAACAGAATTTCCAAGCAAACTTCAAATGGCCAGAGGAGGAATCCTACGTTATGCTGCTATGGGCCTGGGGAAGATGATTATGACAACAGCACTCGTTGCTCATGCAGGACATGAATCATCAGGTAGTCAACCTATGAGCTGGTCCTCTGGTGAAGATATTGAAGCCAGAGACATGTCAGACCATTCATCAAAACTCCCAAAGGCGGTCACAAAGTTTTCAGGATTTCTAAGGACAATGGGGGACTTCACTCAGTGGAATAAACTCATCCAGAAACCCTTTGAGGAGGGTGATGAGAGAGGGTTAAAGCTGGTTCAATCTATCTTAAAGACGATTATGTTAAGGAGAACCAAGTTTAGCACTGATCGTGAAGGCAGGCATATTTTAGCCCTTCCTCCTGCTGATATTCATGTGGTTTACTGTGAACTCACAGAAGCTGAAAAAGACTTTTATGAGGCCTTGTTTAAAAGATCAAAGGAAGTTGTTGAAGAAATGCGCAAGGGGGAACAGGGAGAGTGTCCCATATGTCTTGAAGCATTTGAAGATGCAGTATTGACAACTTGTGCTCATCGCTTATGCCGAGAATGTCTCTTGGCAAGTTGGCGGAATTCAACTTCTGGCTTATGTCCAGTTTGCAGGAAGAGTCTAAGTAAGCAAGATCTTATTACAGCACCAACTTACAGTCGGTTCCATGTTGATATTGAGAAAAACTGGGTGGAATCATCCAACATAGTTATTCTTTTGCGTGAACTTGAATGCCTTCGTTCATCAGGCTCAAAGAGCATTGTCTTCAGCCAGTGGACGGCCTTTCTGGACCTCCTGCAGATACCTCTTTCTCGGAGTAACATTCCATTTTTGCGCCTGGATGGGACTCTGAATCAACAGCAGCGCGAAAAAGTGTTAAAACAGTTTTCAGAAGACAGTGACATTCTGGTGTTGCTAATGTCACTGAAGGCCGGAGGAGTTGGAATAAATTTGACAGCAGCATCCAATGCCTTTGTCTTGGACAGTTCTGGGCTTTGTGCCTCAATTGTACATGCAAATAAGCATAAAAATCCTACTAGAAATGAAATTGAAGTTGAAAACAAGGAATGCATTTCGGATGCTGAGGTTGATAACATCGTTGGGGTTGGAGATATGTTAGTATTTGAAATTGAAATTTTTGTTGCTAGAATTCTGTGGAAGGAGAAGCCAAAGATGAAATGCGCAAGGGGGAACAGGTATATCAAAATAATGCCTGGCTTATGGAGTAACATTCCATTTTTGCGCCTGGATGGGACTCTGAATCAACAGCAGCGTGAAAAATTGTTAAAACAGTTTTCAGAAGACAGTGACATTCTGGTGTTGCTAATGTCACTGAAGGCCAGAGGAGTTGGAATAAATTTAACAGCAGCATCCAATGCCTTTGTCTTGGGAACAGTCGAGGAGAGGATGGAAGCAGTGCAAGCTGGTAAACAGCGGTTAATTTCTGGCGCCTTGACTGACCAAGAAGTTCGTTCAGCTCGCATAGAAGAACTAAAGATGCTTTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

690

Amino Acids

77.16

Weight (kDa)

8.54

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	258 - 347	4.4e-08	SNF2-related domain
zf-C3HC4_3	PF13920	349 - 396	3.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	351 - 391	3.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	351 - 392	7.3e-08	Ring finger domain
zf-C3HC4	PF00097	352 - 391	6.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	352 - 389	7.3e-09	RING-type zinc-finger
Helicase_C	PF00271	427 - 525	4.7e-13	Helicase conserved C-terminal domain
Helicase_C	PF00271	596 - 661	5.1e-06	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22750
fragaria_vesca	FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660
malus_domestica	MD17G1018000.v1.1
prunus_persica	Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1
pyrus_communis	pycom17g01450
rosa_chinensis	RchiOBHm_Chr2g0174191 RchiOBHm_Chr4g0410751
rosa_laevigata	RLG00000022255 RLG00000022256 RLG00000029588
rosa_multiflora	Rmu_sc0000954.1_g000002 Rmu_ssc0000198.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078340 Rroxscaffold_2G00078370 Rroxscaffold_5G00355500
rosa_rugosa	Rorug02G0575800 Rorug02G0575900 Rorug02G0576000 Rorug04G0376700
rosa_samantha	Rh2AG655200 Rh2BG666400 Rh2CG630600 Rh2DG681000 Rh4AG162800 Rh4BG161900 Rh4BG162000 Rh4DG158500 Rh7CG048600
rosa_wichuraiana	Rw2G053780 Rw4G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1034, 1744
AccB1I	GGYRCC	1 cut(s)	2009
AccII	CGCG	2 cut(s)	22, 1428
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	5 cut(s)	53, 292, 743, 1141, 1996
AclWI	GGATC	2 cut(s)	110, 483
AcoI	YGGCCR	5 cut(s)	149, 189, 223, 293, 567
AcsI	RAATTY	7 cut(s)	24, 545, 1144, 1510, 1695, 1710, 1918
AcuI	CTGAAG	4 cut(s)	35, 1312, 1508, 1916
AcyI	GRCGYC	1 cut(s)	2010
AdeI	CACNNNGTG	1 cut(s)	792
AfaI	GTAC	3 cut(s)	168, 350, 1572
AfiI	CCNNNNNNNGG	4 cut(s)	158, 291, 742, 1339
AflII	CTTAAG	2 cut(s)	265, 286
AflIII	ACRYGT	2 cut(s)	86, 711
AjiI	CACGTC	1 cut(s)	87
AjnI	CCWGG	4 cut(s)	603, 1398, 1774, 1806
AluBI	AGCT	6 cut(s)	456, 678, 847, 974, 1985, 2039
AluI	AGCT	6 cut(s)	456, 678, 847, 974, 1985, 2039
Alw21I	GWGCWC	1 cut(s)	1105
Alw26I	GTCTC	4 cut(s)	108, 159, 702, 1130
AlwI	GGATC	2 cut(s)	110, 483
AlwNI	CAGNNNCTG	1 cut(s)	974
Aor13HI	TCCGGA	1 cut(s)	231
ApeKI	GCWGC	6 cut(s)	485, 593, 1423, 1520, 1831, 1928
ApoI	RAATTY	7 cut(s)	24, 545, 1144, 1510, 1695, 1710, 1918
Asp700I	GAANNNNTTC	1 cut(s)	1296
AspLEI	GCGC	6 cut(s)	1035, 1398, 1428, 1745, 1806, 2012
AspS9I	GGNCC	4 cut(s)	499, 601, 681, 1351
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	3 cut(s)	542, 701, 839
AsuII	TTCGAA	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	681, 1351
BalI	TGGCCA	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	2009
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	3 cut(s)	1318, 1461, 1869
Bbv12I	GWGCWC	1 cut(s)	1105
BbvCI	CCTCAGC	2 cut(s)	423, 1644
BbvI	GCAGC	6 cut(s)	472, 580, 1435, 1532, 1843, 1940
BccI	CCATC	3 cut(s)	1397, 1805, 1963
BceAI	ACGGC	6 cut(s)	54, 136, 204, 238, 486, 1356
BciT130I	CCWGG	4 cut(s)	605, 1400, 1776, 1808
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	4 cut(s)	108, 159, 702, 1130
BfaI	CTAG	3 cut(s)	378, 1599, 1707
BfmI	CTRYAG	1 cut(s)	1358
BfoI	RGCGCY	1 cut(s)	2013
BfrI	CTTAAG	2 cut(s)	265, 286
BglII	AGATCT	1 cut(s)	1195
BisI	GCNGC	7 cut(s)	293, 486, 594, 1424, 1521, 1832, 1929
BlsI	GCNGC	7 cut(s)	294, 487, 595, 1425, 1522, 1833, 1930
Bme1390I	CCNGG	5 cut(s)	159, 605, 1400, 1776, 1808
Bme18I	GGWCC	2 cut(s)	681, 1351
BmgBI	CACGTC	1 cut(s)	87
BmgT120I	GGNCC	4 cut(s)	499, 601, 681, 1351
BmiI	GGNNCC	3 cut(s)	500, 1226, 2011
BmrFI	CCNGG	5 cut(s)	159, 605, 1400, 1776, 1808
BmrI	ACTGGG	1 cut(s)	1258
BmsI	GCATC	6 cut(s)	409, 1072, 1532, 1630, 1940, 2049
BmuI	ACTGGG	1 cut(s)	1258
BpiI	GAAGAC	3 cut(s)	1318, 1461, 1869
BplI	GAGNNNNNCTC	2 cut(s)	1110, 1142
Bpu10I	CCTNAGC	2 cut(s)	423, 1644
Bpu14I	TTCGAA	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	2010
BsaJI	CCNNGG	2 cut(s)	220, 604
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 226, 256
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 291, 742, 1339
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	5 cut(s)	56, 296, 1166, 1253, 1333
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	4 cut(s)	605, 1400, 1776, 1808
BseDI	CCNNGG	2 cut(s)	220, 604
BseGI	GGATG	9 cut(s)	424, 804, 1259, 1408, 1523, 1645, 1816, 1931, 1974
BseLI	CCNNNNNNNGG	4 cut(s)	158, 291, 742, 1339
BseMII	CTCAG	5 cut(s)	414, 450, 485, 803, 1635
BseNI	ACTGG	5 cut(s)	56, 296, 1166, 1253, 1333
BseRI	GAGGAG	6 cut(s)	112, 588, 836, 1512, 1920, 1976
BseX3I	CGGCCG	2 cut(s)	189, 223
BseXI	GCAGC	6 cut(s)	472, 580, 1435, 1532, 1843, 1940
BsgI	GTGCAG	1 cut(s)	471
Bsh1236I	CGCG	2 cut(s)	22, 1428
Bsh1285I	CGRYCG	2 cut(s)	192, 226
BshNI	GGYRCC	1 cut(s)	2009
BsiEI	CGRYCG	2 cut(s)	192, 226
BsiHKAI	GWGCWC	1 cut(s)	1105
BsiSI	CCGG	5 cut(s)	111, 159, 192, 232, 1494
BslFI	GGGAC	5 cut(s)	199, 794, 1041, 1420, 1828
BslI	CCNNNNNNNGG	4 cut(s)	158, 291, 742, 1339
BsmAI	GTCTC	4 cut(s)	108, 159, 702, 1130
BsmBI	CGTCTC	2 cut(s)	108, 159
BsmFI	GGGAC	5 cut(s)	199, 794, 1041, 1420, 1828
BsmI	GAATGC	3 cut(s)	523, 1298, 1634
Bsp119I	TTCGAA	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	13, 1105
Bsp13I	TCCGGA	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	1570
Bsp143I	GATC	5 cut(s)	102, 475, 901, 1007, 1195
Bsp68I	TCGCGA	1 cut(s)	22
BspACI	CCGC	5 cut(s)	53, 292, 743, 1141, 1996
BspCNI	CTCAG	5 cut(s)	415, 451, 486, 802, 1636
BspEI	TCCGGA	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	22, 1428
BspLI	GGNNCC	3 cut(s)	500, 1226, 2011
BspMAI	CTGCAG	1 cut(s)	1362
BspPI	GGATC	2 cut(s)	110, 483
BspT104I	TTCGAA	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	2009
BspTI	CTTAAG	2 cut(s)	265, 286
BsrFI	RCCGGY	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	1570
BsrI	ACTGG	5 cut(s)	56, 296, 1166, 1253, 1333
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	220, 604
BssMI	GATC	5 cut(s)	102, 475, 901, 1007, 1195
BssNI	GRCGYC	1 cut(s)	2010
Bst2UI	CCWGG	4 cut(s)	605, 1400, 1776, 1808
Bst6I	CTCTTC	1 cut(s)	1172
BstACI	GRCGYC	1 cut(s)	2010
BstAFI	CTTAAG	2 cut(s)	265, 286
BstAPI	GCANNNNNTGC	4 cut(s)	47, 635, 1529, 1937
BstAUI	TGTACA	1 cut(s)	1570
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	5 cut(s)	9, 193, 914, 1983, 2041
BstDEI	CTNAG	7 cut(s)	423, 459, 494, 767, 789, 1184, 1644
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	9 cut(s)	424, 804, 1259, 1408, 1523, 1645, 1816, 1931, 1974
BstFNI	CGCG	2 cut(s)	22, 1428
BstH2I	RGCGCY	1 cut(s)	2013
BstHHI	GCGC	6 cut(s)	1035, 1398, 1428, 1745, 1806, 2012
BstKTI	GATC	5 cut(s)	105, 478, 904, 1010, 1198
BstMAI	GTCTC	4 cut(s)	108, 159, 702, 1130
BstMBI	GATC	5 cut(s)	102, 475, 901, 1007, 1195
BstMCI	CGRYCG	2 cut(s)	192, 226
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 635, 1317, 1529, 1937, 1982
BstNI	CCWGG	4 cut(s)	605, 1400, 1776, 1808
BstNSI	RCATGY	2 cut(s)	715, 1577
BstSCI	CCNGG	5 cut(s)	157, 603, 1398, 1774, 1806
BstSFI	CTRYAG	1 cut(s)	1358
BstUI	CGCG	2 cut(s)	22, 1428
BstV1I	GCAGC	6 cut(s)	472, 580, 1435, 1532, 1843, 1940
BstV2I	GAAGAC	3 cut(s)	1318, 1461, 1869
BstX2I	RGATCY	2 cut(s)	475, 1195
BstYI	RGATCY	2 cut(s)	475, 1195
BstZI	CGGCCG	2 cut(s)	189, 223
BtgI	CCRYGG	1 cut(s)	220
BtgZI	GCGATG	2 cut(s)	80, 1091
BtrI	CACGTC	1 cut(s)	87
BtsCI	GGATG	9 cut(s)	424, 804, 1259, 1408, 1523, 1645, 1816, 1931, 1974
BtsI	GCAGTG	2 cut(s)	48, 1983
BtsIMutI	CAGTG	9 cut(s)	48, 797, 897, 1340, 1465, 1484, 1873, 1892, 1983
BtuMI	TCGCGA	1 cut(s)	22
Cac8I	GCNNGC	5 cut(s)	9, 193, 914, 1983, 2041
CaiI	CAGNNNCTG	1 cut(s)	974
CfoI	GCGC	6 cut(s)	1035, 1398, 1428, 1745, 1806, 2012
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	4 cut(s)	499, 601, 681, 1351
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	3 cut(s)	167, 349, 1571
CviAII	CATG	6 cut(s)	641, 650, 712, 947, 1229, 1574
CviQI	GTAC	3 cut(s)	167, 349, 1571
DdeI	CTNAG	7 cut(s)	423, 459, 494, 767, 789, 1184, 1644
DinI	GGCGCC	1 cut(s)	2011
DpnI	GATC	5 cut(s)	104, 477, 903, 1009, 1197
DpnII	GATC	5 cut(s)	102, 475, 901, 1007, 1195
DraI	TTTAAA	1 cut(s)	1003
DraIII	CACNNNGTG	1 cut(s)	792
EaeI	YGGCCR	5 cut(s)	149, 189, 223, 293, 567
EagI	CGGCCG	2 cut(s)	189, 223
Eam1104I	CTCTTC	1 cut(s)	1172
EarI	CTCTTC	1 cut(s)	1172
EciI	GGCGGA	1 cut(s)	1156
EclXI	CGGCCG	2 cut(s)	189, 223
Eco147I	AGGCCT	1 cut(s)	995
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	681, 1351
Eco52I	CGGCCG	2 cut(s)	189, 223
Eco57I	CTGAAG	4 cut(s)	35, 1312, 1508, 1916
EcoRI	GAATTC	3 cut(s)	24, 1144, 1710
EcoRII	CCWGG	4 cut(s)	603, 1398, 1774, 1806
EcoT22I	ATGCAT	2 cut(s)	523, 1634
EcoT38I	GRGCYC	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	2011
EheI	GGCGCC	1 cut(s)	2011
Esp3I	CGTCTC	2 cut(s)	108, 159
FaeI	CATG	6 cut(s)	644, 653, 715, 950, 1232, 1577
FaqI	GGGAC	5 cut(s)	199, 794, 1041, 1420, 1828
FatI	CATG	6 cut(s)	640, 649, 711, 946, 1228, 1573
FauI	CCCGC	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	1061
Fnu4HI	GCNGC	7 cut(s)	293, 486, 594, 1424, 1521, 1832, 1929
FokI	GGATG	9 cut(s)	431, 791, 1246, 1415, 1510, 1652, 1823, 1918, 1981
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	7 cut(s)	293, 486, 594, 1424, 1521, 1832, 1929
FspBI	CTAG	3 cut(s)	378, 1599, 1707
FspI	TGCGCA	2 cut(s)	1034, 1744
GlaI	GCGC	6 cut(s)	1034, 1397, 1427, 1744, 1805, 2011
GluI	GCNGC	7 cut(s)	293, 486, 594, 1424, 1521, 1832, 1929
HaeII	RGCGCY	1 cut(s)	2013
HapII	CCGG	5 cut(s)	111, 159, 192, 232, 1494
HgaI	GACGC	1 cut(s)	542
HhaI	GCGC	6 cut(s)	1035, 1398, 1428, 1745, 1806, 2012
Hin1I	GRCGYC	1 cut(s)	2010
Hin1II	CATG	6 cut(s)	644, 653, 715, 950, 1232, 1577
Hin6I	GCGC	6 cut(s)	1033, 1396, 1426, 1743, 1804, 2010
HinP1I	GCGC	6 cut(s)	1033, 1396, 1426, 1743, 1804, 2010
HincII	GTYRAC	1 cut(s)	668
HindII	GTYRAC	1 cut(s)	668
HinfI	GANTC	9 cut(s)	228, 579, 653, 1180, 1256, 1408, 1414, 1816, 1822
HpaII	CCGG	5 cut(s)	111, 159, 192, 232, 1494
HphI	GGTGA	3 cut(s)	542, 701, 839
Hpy166II	GTNNAC	6 cut(s)	668, 955, 962, 1286, 1338, 1991
Hpy188III	TCNNGA	7 cut(s)	21, 232, 759, 808, 905, 1067, 1349
Hpy8I	GTNNAC	6 cut(s)	668, 955, 962, 1286, 1338, 1991
HpyAV	CCTTC	6 cut(s)	902, 938, 1307, 1483, 1714, 1891
HpyCH4IV	ACGT	2 cut(s)	86, 586
HpyCH4V	TGCA	9 cut(s)	488, 521, 644, 1085, 1173, 1360, 1577, 1632, 1981
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 635, 1317, 1529, 1937, 1982
HpyF3I	CTNAG	7 cut(s)	423, 459, 494, 767, 789, 1184, 1644
HpySE526I	ACGT	2 cut(s)	86, 586
Hsp92I	GRCGYC	1 cut(s)	2010
Hsp92II	CATG	6 cut(s)	644, 653, 715, 950, 1232, 1577
HspAI	GCGC	6 cut(s)	1033, 1396, 1426, 1743, 1804, 2010
KasI	GGCGCC	1 cut(s)	2009
Kpn2I	TCCGGA	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	102, 475, 901, 1007, 1195
Lsp1109I	GCAGC	6 cut(s)	472, 580, 1435, 1532, 1843, 1940
LweI	GCATC	6 cut(s)	409, 1072, 1532, 1630, 1940, 2049
MaeI	CTAG	3 cut(s)	378, 1599, 1707
MaeII	ACGT	2 cut(s)	86, 586
MaeIII	GTNAC	9 cut(s)	82, 530, 745, 1379, 1460, 1482, 1787, 1868, 1890
MalI	GATC	5 cut(s)	104, 477, 903, 1009, 1197
MboI	GATC	5 cut(s)	102, 475, 901, 1007, 1195
MfeI	CAATTG	2 cut(s)	344, 1566
MflI	RGATCY	2 cut(s)	475, 1195
MhlI	GDGCHC	2 cut(s)	13, 1105
MlsI	TGGCCA	1 cut(s)	569
MluNI	TGGCCA	1 cut(s)	569
Mly113I	GGCGCC	1 cut(s)	2010
MlyI	GAGTC	3 cut(s)	1189, 1402, 1810
MmeI	TCCRAC	5 cut(s)	427, 1287, 1483, 1648, 1891
Mox20I	TGGCCA	1 cut(s)	569
Mph1103I	ATGCAT	2 cut(s)	523, 1634
MroI	TCCGGA	1 cut(s)	231
MroNI	GCCGGC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	1296
MscI	TGGCCA	1 cut(s)	569
MslI	CAYNNNNRTG	2 cut(s)	1469, 1877
Msp20I	TGGCCA	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	1996
MspCI	CTTAAG	2 cut(s)	265, 286
MspI	CCGG	5 cut(s)	111, 159, 192, 232, 1494
MspR9I	CCNGG	5 cut(s)	159, 605, 1400, 1776, 1808
MunI	CAATTG	2 cut(s)	344, 1566
Mva1269I	GAATGC	3 cut(s)	523, 1298, 1634
MvaI	CCWGG	4 cut(s)	605, 1400, 1776, 1808
MvnI	CGCG	2 cut(s)	22, 1428
MwoI	GCNNNNNNNGC	6 cut(s)	47, 635, 1317, 1529, 1937, 1982
NaeI	GCCGGC	1 cut(s)	193
NarI	GGCGCC	1 cut(s)	2010
NciI	CCSGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	1061
NdeII	GATC	5 cut(s)	102, 475, 901, 1007, 1195
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	6 cut(s)	644, 653, 715, 950, 1232, 1577
NlaIV	GGNNCC	3 cut(s)	500, 1226, 2011
NmeAIII	GCCGAG	1 cut(s)	1142
NmuCI	GTSAC	7 cut(s)	82, 530, 745, 1460, 1482, 1868, 1890
NruI	TCGCGA	1 cut(s)	22
NsbI	TGCGCA	2 cut(s)	1034, 1744
NsiI	ATGCAT	2 cut(s)	523, 1634
NspI	RCATGY	2 cut(s)	715, 1577
NspV	TTCGAA	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	995
PciI	ACATGT	1 cut(s)	711
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 1114
PctI	GAATGC	3 cut(s)	523, 1298, 1634
PdiI	GCCGGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	1296
PfeI	GAWTC	6 cut(s)	228, 579, 653, 1256, 1414, 1822
PkrI	GCNGC	7 cut(s)	294, 487, 595, 1425, 1522, 1833, 1930
PleI	GAGTC	3 cut(s)	1188, 1402, 1810
PluTI	GGCGCC	1 cut(s)	2013
PpsI	GAGTC	3 cut(s)	1188, 1402, 1810
PscI	ACATGT	1 cut(s)	711
Psp6I	CCWGG	4 cut(s)	603, 1398, 1774, 1806
PspGI	CCWGG	4 cut(s)	603, 1398, 1774, 1806
PspN4I	GGNNCC	3 cut(s)	500, 1226, 2011
PspPI	GGNCC	4 cut(s)	499, 601, 681, 1351
PstI	CTGCAG	1 cut(s)	1362
PstNI	CAGNNNCTG	1 cut(s)	974
PsuI	RGATCY	2 cut(s)	475, 1195
RruI	TCGCGA	1 cut(s)	22
RsaI	GTAC	3 cut(s)	168, 350, 1572
RsaNI	GTAC	3 cut(s)	167, 349, 1571
RseI	CAYNNNNRTG	2 cut(s)	1469, 1877
SatI	GCNGC	7 cut(s)	293, 486, 594, 1424, 1521, 1832, 1929
Sau3AI	GATC	5 cut(s)	102, 475, 901, 1007, 1195
Sau96I	GGNCC	4 cut(s)	499, 601, 681, 1351
SchI	GAGTC	3 cut(s)	1189, 1402, 1810
ScrFI	CCNGG	5 cut(s)	159, 605, 1400, 1776, 1808
SduI	GDGCHC	2 cut(s)	13, 1105
SfaNI	GCATC	6 cut(s)	409, 1072, 1532, 1630, 1940, 2049
SfcI	CTRYAG	1 cut(s)	1358
SfoI	GGCGCC	1 cut(s)	2011
SfuI	TTCGAA	1 cut(s)	28
SinI	GGWCC	2 cut(s)	681, 1351
SmiMI	CAYNNNNRTG	2 cut(s)	1469, 1877
SmlI	CTYRAG	2 cut(s)	265, 286
SmoI	CTYRAG	2 cut(s)	265, 286
SseBI	AGGCCT	1 cut(s)	995
SsiI	CCGC	5 cut(s)	53, 292, 743, 1141, 1996
SspDI	GGCGCC	1 cut(s)	2009
SspMI	CTAG	3 cut(s)	378, 1599, 1707
StuI	AGGCCT	1 cut(s)	995
StyD4I	CCNGG	5 cut(s)	157, 603, 1398, 1774, 1806
TaiI	ACGT	2 cut(s)	89, 589
TaqI	TCGA	2 cut(s)	28, 1959
TatI	WGTACW	2 cut(s)	348, 1570
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	6 cut(s)	228, 579, 653, 1256, 1414, 1822
TscAI	CASTG	9 cut(s)	48, 797, 904, 1340, 1465, 1491, 1873, 1899, 1983
TseFI	GTSAC	7 cut(s)	82, 530, 745, 1460, 1482, 1868, 1890
TseI	GCWGC	6 cut(s)	485, 593, 1423, 1520, 1831, 1928
Tsp45I	GTSAC	7 cut(s)	82, 530, 745, 1460, 1482, 1868, 1890
TspDTI	ATGAA	9 cut(s)	83, 399, 405, 666, 714, 935, 1293, 1620, 1751
TspRI	CASTG	9 cut(s)	48, 797, 904, 1340, 1465, 1491, 1873, 1899, 1983
Vha464I	CTTAAG	2 cut(s)	265, 286
VpaK11BI	GGWCC	2 cut(s)	681, 1351
XapI	RAATTY	7 cut(s)	24, 545, 1144, 1510, 1695, 1710, 1918
XceI	RCATGY	2 cut(s)	715, 1577
XmnI	GAANNNNTTC	1 cut(s)	1296
XspI	CTAG	3 cut(s)	378, 1599, 1707
Zsp2I	ATGCAT	2 cut(s)	523, 1634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.