Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000198.1

Orthogroup ID

OG0002288

Physical Location & Seq

Genomic Coordinates Forward (+)

6381 .. 13246

Gene Structure 6866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000198.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3342 bp

atgggcaacaaaatcaccgacgaactattatccaccgttcgttcaatcgtcgattccggctactccgacatggacataatccgagccctacacatggccaacaacgacgtcaccgccgcgatcaacatcatcttcgacacccccacacccaaatctaaagaaaggtcagatttcgccagcagtcccaaaatctcgagtcctgaagtcgcgaattcgaagccgaacggcgccgattgccccgccagttcaggcgatgatgtagtaggtgacgtggagagttcggccggcagcgagtggtggttggtgggttgcggcgaggtggcggggttatcgacgtgtagagggaggaggatcaagccccgagacgaagtggatttcacatttcctttgaagatttcgccgtctcccggcaaggttttcgggaggggacggccggcggcggcgtgttcggagattgtgaggttctccacgacggattccggagagattggacgaatacccaaggaatgggctcggtgtctgttgccacttgtgagagataagaaggttaaaatcgaggggcattgtaaatctgctcctgatgtcttgagcattatggacaccattctcttgtctataagtgtgtatatcaatagttctatgttccttaagcaaaagcagacctcacttaagacagccagtaattccacagaggaaacagtggttcatcctctcccgacattgtttcagttgctaggcctaactcctttccagaaggcggaatttactcctggtgacttgtacacgagaaagcgccctttagaccaaaaggacagttctgggctttgtgcctcaattatacatgcaaatatttctaaaaatccttctagaaatgaagatgaagttgaaaatgaggaatgtatttcagatgctgaggttgataacattgttggggttggagatagctctgagttagaggaaatggatcctcctgctgcacttctgtgtgaacttcgtccgtatcaaaagcaggctcttcattggatgatccaactagaaaagggaaaatgcatggatgaggcagcaatgactcttcacccttgttgggaggcatatcatcttgcagacaagagggaccgtattatatatttgaacgcattttctggtgacgcaacaacagaatttccaagcgcacttcaaatggccagaggaggaatcctagctgatgctatgggcctgggaaagacgattatgacaatagcactccttgttgctcattcaggacatggatcatcaggtagtcaacctgtgagccggtcctccagtgaagatattgaagccagtgacatgtcagaatattcatcaaaactcccaaaggcggtcacaaagttttcaggatttcataagttgatgaagcaaaaaaaaacgcttgcatatgggggcagtttgattgtatgtcctatgacccttcttggccagtggaaggcagagattgaatctcatgtgcaacctggatctgtatcagtatatgttcattatggacaaagtagaccaagggatgcgactcttttagccctaagcgatgttgtgatcactacatatggcgttttagcatcagaattttctacagagaattctaaggacaatgggggactttactcagttagttggtttagagtggttcttgatgaagcgcacaccataaaatcctctaaaagccaaatctctattgctgctgctgctttagttgctggtcgccgatggtgtcttactggcacccctatacaggcagagattgaatctcatgtgcaacctggatctgtatcagtatatgttcattatggacaaagtagaccaagggatgcgactcttttagcccaaagcgatgttgtgatcactacatatggcgttttagcatcagaattttctacagagaattctaaggacaatgggggactttactcagttagttggtttagagtggttcttgatgaagcgcacaccataaaatcctctaaaagccaaatctctattgctgctgctgctttagttgctggtcgccgatggtgtcttactggcacccctatacagaacaatctggaggacatttatagtctactccggtttttgagggtagaaccttgggcgaattgggcttggtggaataaactcatccagaaaccctttgaggagggtgatgagagagggttaaggctggttcaatctatcttaaagacgataatgttaaggagaaccaagtttagcactgatcgtgaaggcaggcctattttagtccttcctcctgctgatattcaggtggtttactgtgaactcacagaagctgaaaaagacttttatgaggccttgtttaaaagatcaaaggtgaaatttgatcaatttgttgagcaaggacgggttcttcataattatgcatccatattggaattacttttacgccttcgccaatgttgtgatcacccatttcttgtgatgagtcgaggtgatacacaagaattttcagatctgaataagcttgcaagacattttctaaaaggcagccagaattctgtggaaggggaagccaaagatgtgccttcacgggcttatgttcaggaagttgttgaagaaatgcgcaagggggaacagggagagtgtcccatatgtcttgaagcatttgaagatgcagtattgacaacttgtgctcatcgcttatgccgagaatgtctcttggcaagttggcggaattcaacttctggcttatgtccagtttgcaggaagagtctaagtaagcaagatcttattacagcaccaactgacagtcggttccatgttgatattgagaaaaactgggtggaatcatccaaaatagttattcttttgcgtgaacttgaatgtcttcgttcgtcaggctcaaagagcattgtcttcagccagtggacggcctttctggacctcctgcagatacctctttctcggagtaacattccatttttgcgcctggatgggactctgaatcaacagcagcgcgaaaaagttttaaaacagttttcagaagacagtgacattctggtgttgctaatgtcactgaaggccggaggagttggaataaatttgacagcagcatccaatgcctttgtcttggatccatggtggaatccagctgtagaggaacaagcggtcatgcgtattcatcgcatcggacaaacaaaaagtgtgatgatcaaacgatttatcgtcaagggaacagtcgaggaaagaatggaagcagtgcaagctcgtaaacagcggttaatttctggcgccttgactgaccaagaagttcgttcggctcgcatagaagaactaaagatgctttttacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

1113

Amino Acids

123.38

Weight (kDa)

6.25

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22750
fragaria_vesca	FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660
malus_domestica	MD17G1018000.v1.1
prunus_persica	Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1
pyrus_communis	pycom17g01450
rosa_chinensis	RchiOBHm_Chr2g0174191 RchiOBHm_Chr4g0410751
rosa_laevigata	RLG00000022255 RLG00000022256 RLG00000029588
rosa_multiflora	Rmu_sc0000954.1_g000002 Rmu_ssc0000198.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078340 Rroxscaffold_2G00078370 Rroxscaffold_5G00355500
rosa_rugosa	Rorug02G0575800 Rorug02G0575900 Rorug02G0576000 Rorug04G0376700
rosa_samantha	Rh2AG655200 Rh2BG666400 Rh2CG630600 Rh2DG681000 Rh4AG162800 Rh4BG161900 Rh4BG162000 Rh4DG158500 Rh7CG048600
rosa_wichuraiana	Rw2G053780 Rw4G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
Acc16I	TGCGCA	1 cut(s)	2612
AccB1I	GGYRCC	4 cut(s)	227, 1754, 2057, 3278
AccB7I	CCANNNNNTGG	1 cut(s)	507
AccI	GTMKAC	3 cut(s)	1528, 1831, 2095
AccII	CGCG	3 cut(s)	119, 209, 3006
AccIII	TCCGGA	1 cut(s)	479
AclWI	GGATC	9 cut(s)	359, 959, 972, 1021, 1276, 1501, 1804, 3116, 3129
AcoI	YGGCCR	5 cut(s)	96, 282, 431, 1182, 1453
AcuI	CTGAAG	3 cut(s)	222, 2890, 3086
AcyI	GRCGYC	3 cut(s)	108, 228, 3279
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	9 cut(s)	94, 407, 507, 757, 1084, 1357, 1462, 1765, 2917
AflII	CTTAAG	2 cut(s)	647, 668
AflIII	ACRYGT	2 cut(s)	335, 1326
AjiI	CACGTC	2 cut(s)	271, 336
AjnI	CCWGG	5 cut(s)	769, 1215, 1489, 1792, 2976
AleI	CACNNNNGTG	1 cut(s)	982
AluBI	AGCT	6 cut(s)	945, 1202, 2321, 2512, 3140, 3254
AluI	AGCT	6 cut(s)	945, 1202, 2321, 2512, 3140, 3254
Alw21I	GWGCWC	1 cut(s)	2683
Alw26I	GTCTC	3 cut(s)	357, 408, 2708
AlwI	GGATC	9 cut(s)	359, 959, 972, 1021, 1276, 1501, 1804, 3116, 3129
AlwNI	CAGNNNCTG	2 cut(s)	911, 2321
Ama87I	CYCGRG	2 cut(s)	193, 360
Aor13HI	TCCGGA	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	2874
AspLEI	GCGC	9 cut(s)	230, 795, 1172, 1675, 1978, 2613, 2976, 3006, 3281
AspS9I	GGNCC	4 cut(s)	1114, 1213, 1296, 2929
AsuC2I	CCSGG	1 cut(s)	408
AsuII	TTCGAA	1 cut(s)	215
AvaI	CYCGRG	2 cut(s)	193, 360
AvaII	GGWCC	3 cut(s)	1114, 1296, 2929
BalI	TGGCCA	3 cut(s)	98, 1184, 1455
BamHI	GGATCC	2 cut(s)	964, 3121
BanI	GGYRCC	4 cut(s)	227, 1754, 2057, 3278
BanII	GRGCYC	2 cut(s)	88, 514
BauI	CACGAG	1 cut(s)	784
BbsI	GAAGAC	3 cut(s)	2867, 2896, 3039
Bbv12I	GWGCWC	1 cut(s)	2683
BbvCI	CCTCAGC	1 cut(s)	912
BccI	CCATC	3 cut(s)	1734, 2037, 2975
BceAI	ACGGC	4 cut(s)	241, 385, 446, 2934
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	5 cut(s)	771, 1217, 1491, 1794, 2978
BclI	TGATCA	5 cut(s)	1569, 1872, 2371, 2452, 3198
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	3 cut(s)	357, 408, 2708
BfaI	CTAG	4 cut(s)	734, 867, 1034, 1199
BfmI	CTRYAG	4 cut(s)	1605, 1908, 2936, 3141
BfoI	RGCGCY	3 cut(s)	231, 796, 3282
BfrI	CTTAAG	2 cut(s)	647, 668
BglII	AGATCT	2 cut(s)	2500, 2773
Bme1390I	CCNGG	6 cut(s)	408, 771, 1217, 1491, 1794, 2978
Bme18I	GGWCC	3 cut(s)	1114, 1296, 2929
BmeT110I	CYCGRG	2 cut(s)	193, 360
BmgBI	CACGTC	2 cut(s)	271, 336
BmgT120I	GGNCC	4 cut(s)	1114, 1213, 1296, 2929
BmiI	GGNNCC	8 cut(s)	229, 966, 1115, 1756, 2059, 2804, 3123, 3280
BmrFI	CCNGG	6 cut(s)	408, 771, 1217, 1491, 1794, 2978
BmrI	ACTGGG	1 cut(s)	2836
BmuI	ACTGGG	1 cut(s)	2836
BpiI	GAAGAC	3 cut(s)	2867, 2896, 3039
BplI	GAGNNNNNCTC	2 cut(s)	2688, 2720
BpmI	CTGGAG	2 cut(s)	1285, 2099
Bpu10I	CCTNAGC	2 cut(s)	912, 1556
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	408
BsaBI	GATNNNNATC	3 cut(s)	125, 1498, 1801
BsaHI	GRCGYC	3 cut(s)	108, 228, 3279
BsaJI	CCNNGG	6 cut(s)	501, 1216, 1532, 1835, 2120, 3125
BsaWI	WCCGGW	2 cut(s)	479, 2100
Bsc4I	CCNNNNNNNGG	9 cut(s)	94, 407, 507, 757, 1084, 1357, 1462, 1765, 2917
Bse118I	RCCGGY	3 cut(s)	284, 433, 1293
Bse3DI	GCAATG	1 cut(s)	1071
Bse8I	GATNNNNATC	3 cut(s)	125, 1498, 1801
BseAI	TCCGGA	1 cut(s)	479
BseBI	CCWGG	5 cut(s)	771, 1217, 1491, 1794, 2978
BseDI	CCNNGG	6 cut(s)	501, 1216, 1532, 1835, 2120, 3125
BseJI	GATNNNNATC	3 cut(s)	125, 1498, 1801
BseLI	CCNNNNNNNGG	9 cut(s)	94, 407, 507, 757, 1084, 1357, 1462, 1765, 2917
BseMI	GCAATG	1 cut(s)	1071
BseMII	CTCAG	4 cut(s)	903, 939, 1653, 1956
BseRI	GAGGAG	4 cut(s)	361, 1203, 2183, 3090
BseX3I	CGGCCG	2 cut(s)	282, 431
BsgI	GTGCAG	1 cut(s)	960
Bsh1236I	CGCG	3 cut(s)	119, 209, 3006
Bsh1285I	CGRYCG	2 cut(s)	285, 434
BshNI	GGYRCC	4 cut(s)	227, 1754, 2057, 3278
BsiEI	CGRYCG	2 cut(s)	285, 434
BsiHKAI	GWGCWC	1 cut(s)	2683
BsiHKCI	CYCGRG	2 cut(s)	193, 360
BsiSI	CCGG	8 cut(s)	57, 285, 408, 434, 480, 1294, 2101, 3072
BslFI	GGGAC	7 cut(s)	168, 441, 1127, 1644, 1947, 2619, 2998
BslI	CCNNNNNNNGG	9 cut(s)	94, 407, 507, 757, 1084, 1357, 1462, 1765, 2917
BsmAI	GTCTC	3 cut(s)	357, 408, 2708
BsmBI	CGTCTC	2 cut(s)	357, 408
BsmFI	GGGAC	7 cut(s)	168, 441, 1127, 1644, 1947, 2619, 2998
BsoBI	CYCGRG	2 cut(s)	193, 360
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	88, 514, 2683
Bsp13I	TCCGGA	1 cut(s)	479
Bsp1407I	TGTACA	1 cut(s)	780
Bsp19I	CCATGG	1 cut(s)	3125
Bsp68I	TCGCGA	1 cut(s)	209
BspCNI	CTCAG	4 cut(s)	904, 940, 1652, 1955
BspEI	TCCGGA	1 cut(s)	479
BspFNI	CGCG	3 cut(s)	119, 209, 3006
BspLI	GGNNCC	8 cut(s)	229, 966, 1115, 1756, 2059, 2804, 3123, 3280
BspMAI	CTGCAG	1 cut(s)	2940
BspPI	GGATC	9 cut(s)	359, 959, 972, 1021, 1276, 1501, 1804, 3116, 3129
BspQI	GCTCTTC	1 cut(s)	1020
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	4 cut(s)	227, 1754, 2057, 3278
BspTI	CTTAAG	2 cut(s)	647, 668
BsrDI	GCAATG	1 cut(s)	1071
BsrFI	RCCGGY	3 cut(s)	284, 433, 1293
BsrGI	TGTACA	1 cut(s)	780
BssAI	RCCGGY	3 cut(s)	284, 433, 1293
BssECI	CCNNGG	6 cut(s)	501, 1216, 1532, 1835, 2120, 3125
BssNI	GRCGYC	3 cut(s)	108, 228, 3279
BssSI	CACGAG	1 cut(s)	784
BssT1I	CCWWGG	5 cut(s)	501, 1532, 1835, 2120, 3125
Bst2BI	CACGAG	1 cut(s)	784
Bst2UI	CCWGG	5 cut(s)	771, 1217, 1491, 1794, 2978
Bst4CI	ACNGT	9 cut(s)	37, 700, 815, 1118, 2306, 2798, 3024, 3038, 3226
Bst6I	CTCTTC	3 cut(s)	1020, 1077, 2750
BstACI	GRCGYC	3 cut(s)	108, 228, 3279
BstAFI	CTTAAG	2 cut(s)	647, 668
BstAPI	GCANNNNNTGC	1 cut(s)	3107
BstAUI	TGTACA	1 cut(s)	780
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	9 cut(s)	178, 286, 435, 1011, 1410, 2261, 2514, 3252, 3310
BstDEI	CTNAG	8 cut(s)	912, 948, 1556, 1617, 1639, 1920, 1942, 2762
BstDSI	CCRYGG	1 cut(s)	3125
BstFNI	CGCG	3 cut(s)	119, 209, 3006
BstH2I	RGCGCY	3 cut(s)	231, 796, 3282
BstHHI	GCGC	9 cut(s)	230, 795, 1172, 1675, 1978, 2613, 2976, 3006, 3281
BstMAI	GTCTC	3 cut(s)	357, 408, 2708
BstMCI	CGRYCG	2 cut(s)	285, 434
BstMWI	GCNNNNNNNGC	9 cut(s)	234, 1718, 1727, 2021, 2030, 2132, 2895, 3107, 3251
BstNI	CCWGG	5 cut(s)	771, 1217, 1491, 1794, 2978
BstNSI	RCATGY	2 cut(s)	845, 1330
BstSCI	CCNGG	6 cut(s)	406, 769, 1215, 1489, 1792, 2976
BstSFI	CTRYAG	4 cut(s)	1605, 1908, 2936, 3141
BstUI	CGCG	3 cut(s)	119, 209, 3006
BstV2I	GAAGAC	3 cut(s)	2867, 2896, 3039
BstX2I	RGATCY	6 cut(s)	964, 1493, 1796, 2500, 2773, 3121
BstYI	RGATCY	6 cut(s)	964, 1493, 1796, 2500, 2773, 3121
BstZI	CGGCCG	2 cut(s)	282, 431
BtgI	CCRYGG	1 cut(s)	3125
BtgZI	GCGATG	5 cut(s)	267, 1575, 1878, 2669, 3155
BtrI	CACGTC	2 cut(s)	271, 336
BtsI	GCAGTG	1 cut(s)	3252
BtsIMutI	CAGTG	9 cut(s)	705, 1309, 1327, 1463, 2244, 2918, 3043, 3062, 3252
BtuMI	TCGCGA	1 cut(s)	209
Cac8I	GCNNGC	9 cut(s)	178, 286, 435, 1011, 1410, 2261, 2514, 3252, 3310
CaiI	CAGNNNCTG	2 cut(s)	911, 2321
CfoI	GCGC	9 cut(s)	230, 795, 1172, 1675, 1978, 2613, 2976, 3006, 3281
Cfr10I	RCCGGY	3 cut(s)	284, 433, 1293
Cfr13I	GGNCC	4 cut(s)	1114, 1213, 1296, 2929
CseI	GACGC	1 cut(s)	1157
Csp6I	GTAC	1 cut(s)	781
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	8 cut(s)	912, 948, 1556, 1617, 1639, 1920, 1942, 2762
DinI	GGCGCC	2 cut(s)	229, 3280
DraI	TTTAAA	2 cut(s)	2350, 3018
EaeI	YGGCCR	5 cut(s)	96, 282, 431, 1182, 1453
EagI	CGGCCG	2 cut(s)	282, 431
Eam1104I	CTCTTC	3 cut(s)	1020, 1077, 2750
EarI	CTCTTC	3 cut(s)	1020, 1077, 2750
EciI	GGCGGA	2 cut(s)	773, 2734
EclXI	CGGCCG	2 cut(s)	282, 431
Eco130I	CCWWGG	5 cut(s)	501, 1532, 1835, 2120, 3125
Eco147I	AGGCCT	3 cut(s)	738, 2263, 2342
Eco24I	GRGCYC	2 cut(s)	88, 514
Eco47I	GGWCC	3 cut(s)	1114, 1296, 2929
Eco52I	CGGCCG	2 cut(s)	282, 431
Eco57I	CTGAAG	3 cut(s)	222, 2890, 3086
Eco88I	CYCGRG	2 cut(s)	193, 360
EcoRI	GAATTC	5 cut(s)	211, 1612, 1915, 2542, 2722
EcoRII	CCWGG	5 cut(s)	769, 1215, 1489, 1792, 2976
EcoT14I	CCWWGG	5 cut(s)	501, 1532, 1835, 2120, 3125
EcoT22I	ATGCAT	2 cut(s)	1052, 2413
EcoT38I	GRGCYC	2 cut(s)	88, 514
EgeI	GGCGCC	2 cut(s)	229, 3280
EheI	GGCGCC	2 cut(s)	229, 3280
ErhI	CCWWGG	5 cut(s)	501, 1532, 1835, 2120, 3125
Esp3I	CGTCTC	2 cut(s)	357, 408
FaqI	GGGAC	7 cut(s)	168, 441, 1127, 1644, 1947, 2619, 2998
FauI	CCCGC	2 cut(s)	247, 316
FauNDI	CATATG	4 cut(s)	1414, 1579, 1882, 2639
FbaI	TGATCA	5 cut(s)	1569, 1872, 2371, 2452, 3198
FblI	GTMKAC	3 cut(s)	1528, 1831, 2095
FriOI	GRGCYC	2 cut(s)	88, 514
FspBI	CTAG	4 cut(s)	734, 867, 1034, 1199
FspI	TGCGCA	1 cut(s)	2612
GlaI	GCGC	9 cut(s)	229, 794, 1171, 1674, 1977, 2612, 2975, 3005, 3280
GsuI	CTGGAG	2 cut(s)	1285, 2099
HaeII	RGCGCY	3 cut(s)	231, 796, 3282
HapII	CCGG	8 cut(s)	57, 285, 408, 434, 480, 1294, 2101, 3072
HgaI	GACGC	1 cut(s)	1157
HhaI	GCGC	9 cut(s)	230, 795, 1172, 1675, 1978, 2613, 2976, 3006, 3281
Hin1I	GRCGYC	3 cut(s)	108, 228, 3279
Hin6I	GCGC	9 cut(s)	228, 793, 1170, 1673, 1976, 2611, 2974, 3004, 3279
HinP1I	GCGC	9 cut(s)	228, 793, 1170, 1673, 1976, 2611, 2974, 3004, 3279
HincII	GTYRAC	1 cut(s)	1283
HindII	GTYRAC	1 cut(s)	1283
HindIII	AAGCTT	1 cut(s)	2510
HpaII	CCGG	8 cut(s)	57, 285, 408, 434, 480, 1294, 2101, 3072
Hpy99I	CGWCG	5 cut(s)	23, 53, 110, 337, 475
HpyCH4III	ACNGT	9 cut(s)	37, 700, 815, 1118, 2306, 2798, 3024, 3038, 3226
HpyCH4IV	ACGT	3 cut(s)	108, 270, 335
HpyF10VI	GCNNNNNNNGC	9 cut(s)	234, 1718, 1727, 2021, 2030, 2132, 2895, 3107, 3251
HpyF3I	CTNAG	8 cut(s)	912, 948, 1556, 1617, 1639, 1920, 1942, 2762
HpySE526I	ACGT	3 cut(s)	108, 270, 335
Hsp92I	GRCGYC	3 cut(s)	108, 228, 3279
HspAI	GCGC	9 cut(s)	228, 793, 1170, 1673, 1976, 2611, 2974, 3004, 3279
KasI	GGCGCC	2 cut(s)	227, 3278
Kpn2I	TCCGGA	1 cut(s)	479
KroI	GCCGGC	2 cut(s)	284, 433
KroNI	GCCGGC	2 cut(s)	286, 435
Ksp22I	TGATCA	5 cut(s)	1569, 1872, 2371, 2452, 3198
LguI	GCTCTTC	1 cut(s)	1020
LmnI	GCTCC	1 cut(s)	580
MaeI	CTAG	4 cut(s)	734, 867, 1034, 1199
MaeII	ACGT	3 cut(s)	108, 270, 335
MaeIII	GTNAC	9 cut(s)	109, 266, 773, 1145, 1322, 1360, 2957, 3038, 3060
MflI	RGATCY	6 cut(s)	964, 1493, 1796, 2500, 2773, 3121
MhlI	GDGCHC	3 cut(s)	88, 514, 2683
MlsI	TGGCCA	3 cut(s)	98, 1184, 1455
MluNI	TGGCCA	3 cut(s)	98, 1184, 1455
Mly113I	GGCGCC	2 cut(s)	228, 3279
MlyI	GAGTC	7 cut(s)	205, 1063, 1537, 1840, 2482, 2767, 2980
MmeI	TCCRAC	4 cut(s)	90, 916, 1054, 3061
Mox20I	TGGCCA	3 cut(s)	98, 1184, 1455
Mph1103I	ATGCAT	2 cut(s)	1052, 2413
MroI	TCCGGA	1 cut(s)	479
MroNI	GCCGGC	2 cut(s)	284, 433
MroXI	GAANNNNTTC	1 cut(s)	2874
MscI	TGGCCA	3 cut(s)	98, 1184, 1455
MseI	TTAA	9 cut(s)	549, 648, 669, 2189, 2210, 2225, 2349, 3017, 3269
MslI	CAYNNNNRTG	3 cut(s)	982, 2406, 3047
Msp20I	TGGCCA	3 cut(s)	98, 1184, 1455
MspA1I	CMGCKG	2 cut(s)	3140, 3265
MspCI	CTTAAG	2 cut(s)	647, 668
MspI	CCGG	8 cut(s)	57, 285, 408, 434, 480, 1294, 2101, 3072
MspR9I	CCNGG	6 cut(s)	408, 771, 1217, 1491, 1794, 2978
MvaI	CCWGG	5 cut(s)	771, 1217, 1491, 1794, 2978
MvnI	CGCG	3 cut(s)	119, 209, 3006
MwoI	GCNNNNNNNGC	9 cut(s)	234, 1718, 1727, 2021, 2030, 2132, 2895, 3107, 3251
NaeI	GCCGGC	2 cut(s)	286, 435
NarI	GGCGCC	2 cut(s)	228, 3279
NciI	CCSGG	1 cut(s)	408
NcoI	CCATGG	1 cut(s)	3125
NdeI	CATATG	4 cut(s)	1414, 1579, 1882, 2639
NgoMIV	GCCGGC	2 cut(s)	284, 433
NlaIV	GGNNCC	8 cut(s)	229, 966, 1115, 1756, 2059, 2804, 3123, 3280
NmeAIII	GCCGAG	1 cut(s)	2720
NmuCI	GTSAC	8 cut(s)	109, 266, 773, 1145, 1322, 1360, 3038, 3060
NruI	TCGCGA	1 cut(s)	209
NsbI	TGCGCA	1 cut(s)	2612
NsiI	ATGCAT	2 cut(s)	1052, 2413
NspI	RCATGY	2 cut(s)	845, 1330
NspV	TTCGAA	1 cut(s)	215
OliI	CACNNNNGTG	1 cut(s)	982
PaeR7I	CTCGAG	1 cut(s)	193
PceI	AGGCCT	3 cut(s)	738, 2263, 2342
PciI	ACATGT	1 cut(s)	1326
PciSI	GCTCTTC	1 cut(s)	1020
PcsI	WCGNNNNNNNCGW	1 cut(s)	2692
PdiI	GCCGGC	2 cut(s)	286, 435
PdmI	GAANNNNTTC	1 cut(s)	2874
PfeI	GAWTC	8 cut(s)	53, 476, 1194, 1475, 1778, 2834, 2992, 3133
PflMI	CCANNNNNTGG	1 cut(s)	507
PleI	GAGTC	7 cut(s)	204, 1063, 1537, 1840, 2481, 2766, 2980
PluTI	GGCGCC	2 cut(s)	231, 3282
PpsI	GAGTC	7 cut(s)	204, 1063, 1537, 1840, 2481, 2766, 2980
PscI	ACATGT	1 cut(s)	1326
Psp6I	CCWGG	5 cut(s)	769, 1215, 1489, 1792, 2976
PspGI	CCWGG	5 cut(s)	769, 1215, 1489, 1792, 2976
PspN4I	GGNNCC	8 cut(s)	229, 966, 1115, 1756, 2059, 2804, 3123, 3280
PspPI	GGNCC	4 cut(s)	1114, 1213, 1296, 2929
PstI	CTGCAG	1 cut(s)	2940
PstNI	CAGNNNCTG	2 cut(s)	911, 2321
PsuI	RGATCY	6 cut(s)	964, 1493, 1796, 2500, 2773, 3121
PvuII	CAGCTG	1 cut(s)	3140
RruI	TCGCGA	1 cut(s)	209
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
RseI	CAYNNNNRTG	3 cut(s)	982, 2406, 3047
SapI	GCTCTTC	1 cut(s)	1020
SaqAI	TTAA	9 cut(s)	549, 648, 669, 2189, 2210, 2225, 2349, 3017, 3269
Sau96I	GGNCC	4 cut(s)	1114, 1213, 1296, 2929
SchI	GAGTC	7 cut(s)	205, 1063, 1537, 1840, 2482, 2767, 2980
ScrFI	CCNGG	6 cut(s)	408, 771, 1217, 1491, 1794, 2978
SduI	GDGCHC	3 cut(s)	88, 514, 2683
SfcI	CTRYAG	4 cut(s)	1605, 1908, 2936, 3141
SfoI	GGCGCC	2 cut(s)	229, 3280
Sfr274I	CTCGAG	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	3 cut(s)	1114, 1296, 2929
SlaI	CTCGAG	1 cut(s)	193
SmiMI	CAYNNNNRTG	3 cut(s)	982, 2406, 3047
SmlI	CTYRAG	4 cut(s)	193, 586, 647, 668
SmoI	CTYRAG	4 cut(s)	193, 586, 647, 668
SseBI	AGGCCT	3 cut(s)	738, 2263, 2342
SspDI	GGCGCC	2 cut(s)	227, 3278
SspI	AATATT	2 cut(s)	850, 1337
SspMI	CTAG	4 cut(s)	734, 867, 1034, 1199
StuI	AGGCCT	3 cut(s)	738, 2263, 2342
StyD4I	CCNGG	6 cut(s)	406, 769, 1215, 1489, 1792, 2976
StyI	CCWWGG	5 cut(s)	501, 1532, 1835, 2120, 3125
TaaI	ACNGT	9 cut(s)	37, 700, 815, 1118, 2306, 2798, 3024, 3038, 3226
TaiI	ACGT	3 cut(s)	111, 273, 338
TaqI	TCGA	8 cut(s)	51, 135, 194, 215, 332, 555, 2476, 3228
TatI	WGTACW	1 cut(s)	780
TauI	GCSGC	4 cut(s)	119, 315, 440, 443
TfiI	GAWTC	8 cut(s)	53, 476, 1194, 1475, 1778, 2834, 2992, 3133
Tru1I	TTAA	9 cut(s)	549, 648, 669, 2189, 2210, 2225, 2349, 3017, 3269
Tru9I	TTAA	9 cut(s)	549, 648, 669, 2189, 2210, 2225, 2349, 3017, 3269
TscAI	CASTG	9 cut(s)	705, 1309, 1327, 1463, 2251, 2918, 3043, 3069, 3252
TseFI	GTSAC	8 cut(s)	109, 266, 773, 1145, 1322, 1360, 3038, 3060
Tsp45I	GTSAC	8 cut(s)	109, 266, 773, 1145, 1322, 1360, 3038, 3060
TspGWI	ACGGA	2 cut(s)	488, 987
TspRI	CASTG	9 cut(s)	705, 1309, 1327, 1463, 2251, 2918, 3043, 3069, 3252
Van91I	CCANNNNNTGG	1 cut(s)	507
Vha464I	CTTAAG	2 cut(s)	647, 668
VpaK11BI	GGWCC	3 cut(s)	1114, 1296, 2929
XbaI	TCTAGA	1 cut(s)	866
XceI	RCATGY	2 cut(s)	845, 1330
XhoI	CTCGAG	1 cut(s)	193
XmiI	GTMKAC	3 cut(s)	1528, 1831, 2095
XmnI	GAANNNNTTC	1 cut(s)	2874
XspI	CTAG	4 cut(s)	734, 867, 1034, 1199
ZraI	GACGTC	1 cut(s)	109
Zsp2I	ATGCAT	2 cut(s)	1052, 2413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.