Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002288

Physical Location & Seq

Genomic Coordinates Reverse (-)

70065702 .. 70066037

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0575800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAGATTTGGCGGGGTTGAAGACGCTACTTGCATAAATAAGTGGTTGAGTTTTGCAGTTAATAGAAACGTCAAAGAGTTGGATATCAGCATTAGTCCGAGGCTCAGAAGCGATTCGAAGCACTACTACTACTTGTCTCAGAACCTTATTGATACGAAATCTATAACTACTCTAACTTTGGGGTACATAAGAATAAAAGACCCCGATAAAGTTACAAATCTTCCATCATTGAAAACTATGTTCCTAAAAGATGTGGGGTTTGAGGATTTGAAAGCTTTCTTGAGCTTAATTTCCGGGTGTCCTTCCATTGAGTATTTGTCAATGCTTTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

111

Amino Acids

12.6

Weight (kDa)

8.45

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	9 - 111	2e-07	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	13 - 110	3.6e-09	FBD-associated F-box protein At5g56370, LRR repeats
LRR_2	PF07723	76 - 101	1.3e-06	Leucine Rich Repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22750
fragaria_vesca	FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660
malus_domestica	MD17G1018000.v1.1
prunus_persica	Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1
pyrus_communis	pycom17g01450
rosa_chinensis	RchiOBHm_Chr2g0174191 RchiOBHm_Chr4g0410751
rosa_laevigata	RLG00000022255 RLG00000022256 RLG00000029588
rosa_multiflora	Rmu_sc0000954.1_g000002 Rmu_ssc0000198.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078340 Rroxscaffold_2G00078370 Rroxscaffold_5G00355500
rosa_rugosa	Rorug02G0575800 Rorug02G0575900 Rorug02G0576000 Rorug04G0376700
rosa_samantha	Rh2AG655200 Rh2BG666400 Rh2CG630600 Rh2DG681000 Rh4AG162800 Rh4BG161900 Rh4BG162000 Rh4DG158500 Rh7CG048600
rosa_wichuraiana	Rw2G053780 Rw4G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	20, 232, 271
AluBI	AGCT	2 cut(s)	275, 285
AluI	AGCT	2 cut(s)	275, 285
Alw26I	GTCTC	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	112, 275
AsuC2I	CCSGG	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	27
BccI	CCATC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	118, 152
BsiSI	CCGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	116
BspACI	CCGC	1 cut(s)	12
BspCNI	CTCAG	2 cut(s)	117, 151
BspT104I	TTCGAA	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	116
BstDEI	CTNAG	2 cut(s)	104, 138
BstMAI	GTCTC	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	27
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	1 cut(s)	330
CviJI	RGCY	3 cut(s)	103, 275, 285
CviKI_1	RGCY	3 cut(s)	103, 275, 285
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	104, 138
Eco32I	GATATC	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	85
FaeI	CATG	1 cut(s)	333
FaiI	YATR	5 cut(s)	35, 164, 188, 239, 331
FatI	CATG	1 cut(s)	329
FauI	CCCGC	1 cut(s)	5
HapII	CCGG	1 cut(s)	294
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	294
Hpy188I	TCNGA	3 cut(s)	99, 107, 141
Hpy188III	TCNNGA	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	312
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	33, 56
HpyF3I	CTNAG	2 cut(s)	104, 138
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	333
LpnPI	CCDG	1 cut(s)	307
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	211
MboII	GAAGA	2 cut(s)	32, 212
MluCI	AATT	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	2 cut(s)	93, 256
MroXI	GAANNNNTTC	2 cut(s)	112, 275
MseI	TTAA	2 cut(s)	60, 287
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	295
NciI	CCSGG	1 cut(s)	295
NlaIII	CATG	1 cut(s)	333
NspV	TTCGAA	1 cut(s)	116
PdmI	GAANNNNTTC	2 cut(s)	112, 275
PfeI	GAWTC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	60, 287
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	4 cut(s)	72, 147, 277, 287
SfuI	TTCGAA	1 cut(s)	116
SgeI	CNNG	8 cut(s)	25, 42, 111, 145, 215, 292, 306, 307
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	293
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	60, 287
Tru9I	TTAA	2 cut(s)	60, 287
TspDTI	ATGAA	1 cut(s)	318
XmnI	GAANNNNTTC	2 cut(s)	112, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.