Rh2AG655200

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002288
Physical Location & Seq
Reverse (-)
87202919 .. 87209132
6214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG655200.1

Sequence Viewer

Length: 2973 bp
ATGGGCAACAAAATCAGCGACGAACTATTATCCACCGTTCGTTCAATCGTCGATTCCGGCTACTCCGACATGGACATAATCCGAGCCCTACACATGGCCAACAACGACGTCACCGCCGCGATCAACATCATCTTCGACACCCCCACACCCAAATCTAAAGAAAGGTCAGATTTCGCGAGCAGTCCCAAAATCTCGGCTCCTGAAGTCGCGAATTCGAAGCCGAACGGCGGCGATTGCCCCGCCAGTTCAGGCGATGATGTAGTAGGTGACGTGGAGAGTTCGGCCGGCAGCGAGTGGTGGTTGGTGGGTTGCGGCGAGGTGGCGGGGTTATCGACGTGTAGAGGGAGGAGGATCAAGCCCGGAGACGAAGTGGATTTCACATTTCCTTTGAAGATTTCGCCGTCTCCCGGCAAGGTTTTCGGGAGGGGACGGCCGGCGGGGGCGTGTTCGGAGATTGTGAGGTTCTCCACGACGGATTCCGGAGAGATTGGACGAATACCGAAGGAATGGGCTCGGTGTCTGTTGCCACTTGTGAGAGATAAGAAGGTTAAAATCGAGGGGCATTGTAAATCTGCTCCTGATGTCTTGAGCATTATGGACACCATTCTCTTGTCTATAAGTGTGTATATCAATAGTTCTATGTTCCTTAAGCAAAAGCAGACGTTACTTAAGGCAGCCAGTAATTCCACAGAGGAAACAGTGGTTCATCCTCTCCCGACATTGTTTCAGTTGCTAGGCCTAACTCCTTTCCAGAAGGCGGAATTTACTCCTGGTGACTTGTACACGAGAAAGCGCCCTTTAGACCAAAAGGACAGTTCTGGCCTTTGTGCCTCAATTATACATGCAAATATTTCTAAAAATCCTTCTAGAAATGAAGATGAAGTTGAAAATGAGGAATGTATTTCAGATGCTGAGGTTGATAACATTGTTGGGGTCGGAGATAGCTCTGAGTTAGAGGAAATGGATCCTCCTGCTGCACTTCTGTGTGAACTTCGTCCGTATCAAAAGCAGGCTCTTCATTGGATGATCCAACTAGAAAAGGGAAAATGCATGGATAAGGCAGCAATGACTCTTCACCCTTGTTGGGAGGCATATCATCTTGCAGACAAGAGGGATCGTATTATATATTTGAACGCATTTTCTGGTGACGCAACAACAGAATTTCCAAGTGCACTTCAAATGGCCAGAGGAGGAATCCTAGCTGATGCTATGGGCCTGGGAAAGACGATTATGACAATAGCACTCCTTGTTGCTCATTCAGGACATGGATCATCAGGTAGTCAACCTGTGAGCCGGTCCTCCAGTGAAGATATTGAAGCCAGTGACATGTCAGACCATTCATCAAAACTCCCAAAGGCGGTCACAAAGTTTTCAGGATTTCATAAGTTGATGAAGCAAAAAAAAACGCTTGCATATGGGGGCAGTTTGATTGTATGTCCTATGACCCTTCTTGGCCAGTGGAAGGCAGAGATTGAATCTCATGTGCAACCTGGATCTGTATCAGTATATGTTCATTATGGACAAAGTAGACCAAGGGACGCGACTCTTTTAGCCCAAAGCGATGTTGTGATCACTACATATGGCGTTTTAGCATCAGAATTTTCTACAGAGAATTCTAAGGACAATGGGGGACTTTACTCAGTTAGTTGGTTTAGAGTGGTTCTTGATGAAGCGCACACCATAAAATCCTCTAAAAGCCAAATCTCTATTGCTGCTGCTGCTTTAGTTGCTGGTCACCGATGGTGTCTTACTGGCACCCCTATACAGAACAATCTGGAGGACATTTATAGTCTACTCCGGTTTTTGAGGGTAGAACCTTGGGCGAATTGGGCTTGGTGGAATAAACTCATCCAGAAACCCTTTGAGGAGGGTGATCAGAGAGGGTTAAGGCTGGTTCAATCTATCTTAAAGACGATTATGTTAAGGAGAACCAAGTTTAGCACTGATCGTGAAGGCAGGCCTATTTTAGTCCTTCCTCCTGCTGATATTCAGGTGAAATTTGATCAATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCATCCATATTGGAATTACTTTTACGCCTTCGCCAATGTTGTGATCACCCATTTCTTGTGATGAGTCGAGGTGATACACAAGAATATTCAGATCTGAATAAGCTTGCAAGACATTTTCTAAAAGGCAGCCAGAATTCTGTGGAAGGAGAGGCCAAAGATGTGCCTTCACGGGCTTATGTTCAGGAAGTTGTTGAAGAAATGCGCAAGGGGGAACAGGGAGAGTGTCCCATATGTCTTGAAGCATTTGAAGATGCAGTATTGACAACTTGTGCTCATCGCTTGTGCCGAGAATGTCTCTTGGCAAGTTGGCGGAATTCAACTTCTGGCTTATGTCCAGTTTGCAGGAAGAGTCTAAGTAAGCAAGATCTTATTACAGCACCAACTGACAGTCGGTTCCATGTTGATATTGAGAAAAACTGGGTGGAATCATCCAAAATAGTTATTCTTTTGCGTGAACTTGAATGTCTTCGTTCGTCAGGCTCAAAGAGCATTGTCTTCAGCCAGTGGACGGCCTTTCTGGACCTGCTGCAGATACCTCTTTCTCGGAGTAACATTCCATTTTTGCGCCTGGATGGGACTCTGAATCAACAGCAGCGCGAAAAAGTGTTAAAACAGTTTTCAGAAGACAGTGACATTCTGGTGTTGCTAATGTCACTGAAGGCCGGAGGGGTTGGAATAAATTTGACAGCAGCATCCAATGCCTTTGTCTTGGATCCATGGTGGAATCCAGCTGTAGAGGAACAAGCGGTCATGCGTATTCATCGCATCGGACAAACAAAAAGTGTGATGATCAAACGATTTATCGTGAAGGGAACAGTCGAGGAAAGAATGGAAGCAGTGCAAGCTCGTAAACAGCGGTTAATTTCTGGCGCCTTGACTGACCAAGAAGTTCGTTCGGCTCGCATAGACGAACTAAAGATGCTTTTTACTTGA

Protein Analysis

990

Amino Acids

109.66

Weight (kDa)

6.44

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_RAD5A PF24559 6 - 48 7.8e-25 DNA repair protein RAD5A UBA domain
HIRAN PF08797 103 - 206 1.1e-14 HIRAN domain
SNF2-rel_dom PF00176 334 - 698 7.4e-67 SNF2-related domain
DEAD PF00270 404 - 594 1.1e-06 DEAD/DEAH box helicase
zf-C3HC4_3 PF13920 752 - 799 5e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 754 - 795 1.1e-07 Ring finger domain
zf-C3HC4_2 PF13923 754 - 794 4.9e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 755 - 794 1e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 755 - 792 1.1e-08 RING-type zinc-finger
Helicase_C PF00271 826 - 937 1.5e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 111
Acc16I TGCGCA 1 cut(s) 2243
Acc36I ACCTGC 1 cut(s) 2571
AccB1I GGYRCC 2 cut(s) 1754, 2909
AccI GTMKAC 2 cut(s) 1528, 1792
AccII CGCG 5 cut(s) 119, 176, 209, 1541, 2637
AccIII TCCGGA 1 cut(s) 479
AclWI GGATC 9 cut(s) 359, 959, 972, 1021, 1122, 1276, 1501, 2747, 2760
AcoI YGGCCR 5 cut(s) 96, 282, 431, 1182, 1453
AcsI RAATTY 9 cut(s) 211, 761, 1160, 1598, 1612, 1997, 2173, 2353, 2719
AcuI CTGAAG 3 cut(s) 222, 2521, 2717
AcyI GRCGYC 2 cut(s) 108, 2910
AfaI GTAC 1 cut(s) 782
AfiI CCNNNNNNNGG 8 cut(s) 94, 227, 407, 757, 1084, 1357, 1462, 2548
AflII CTTAAG 2 cut(s) 647, 668
AflIII ACRYGT 2 cut(s) 335, 1326
AjiI CACGTC 2 cut(s) 271, 336
AjnI CCWGG 4 cut(s) 769, 1215, 1489, 2607
AleI CACNNNNGTG 1 cut(s) 982
AluBI AGCT 5 cut(s) 945, 1202, 2143, 2771, 2885
AluI AGCT 5 cut(s) 945, 1202, 2143, 2771, 2885
Alw21I GWGCWC 2 cut(s) 1174, 2314
Alw26I GTCTC 3 cut(s) 357, 408, 2339
Alw44I GTGCAC 1 cut(s) 1170
AlwI GGATC 9 cut(s) 359, 959, 972, 1021, 1122, 1276, 1501, 2747, 2760
AlwNI CAGNNNCTG 1 cut(s) 911
Aor13HI TCCGGA 1 cut(s) 479
ApaLI GTGCAC 1 cut(s) 1170
ApoI RAATTY 9 cut(s) 211, 761, 1160, 1598, 1612, 1997, 2173, 2353, 2719
Asp700I GAANNNNTTC 1 cut(s) 2505
AspLEI GCGC 6 cut(s) 795, 1675, 2244, 2607, 2637, 2912
AspS9I GGNCC 3 cut(s) 1213, 1296, 2560
AsuC2I CCSGG 2 cut(s) 360, 408
AsuII TTCGAA 1 cut(s) 215
AvaII GGWCC 2 cut(s) 1296, 2560
BaeGI GKGCMC 1 cut(s) 1174
BalI TGGCCA 3 cut(s) 98, 1184, 1455
BamHI GGATCC 2 cut(s) 964, 2752
BanI GGYRCC 2 cut(s) 1754, 2909
BanII GRGCYC 2 cut(s) 88, 514
BauI CACGAG 1 cut(s) 784
BbsI GAAGAC 3 cut(s) 2498, 2527, 2670
Bbv12I GWGCWC 2 cut(s) 1174, 2314
BbvCI CCTCAGC 1 cut(s) 912
BccI CCATC 2 cut(s) 1734, 2606
BceAI ACGGC 4 cut(s) 241, 385, 446, 2565
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 4 cut(s) 771, 1217, 1491, 2609
BclI TGATCA 5 cut(s) 1569, 1873, 2002, 2083, 2829
BcnI CCSGG 2 cut(s) 360, 408
BcoDI GTCTC 3 cut(s) 357, 408, 2339
BfaI CTAG 4 cut(s) 734, 867, 1034, 1199
BfmI CTRYAG 3 cut(s) 1605, 2567, 2772
BfoI RGCGCY 2 cut(s) 796, 2913
BfrI CTTAAG 2 cut(s) 647, 668
BfuAI ACCTGC 1 cut(s) 2571
BglII AGATCT 2 cut(s) 2131, 2404
Bme1390I CCNGG 6 cut(s) 360, 408, 771, 1217, 1491, 2609
Bme18I GGWCC 2 cut(s) 1296, 2560
BmgBI CACGTC 2 cut(s) 271, 336
BmgT120I GGNCC 3 cut(s) 1213, 1296, 2560
BmiI GGNNCC 6 cut(s) 198, 966, 1756, 2435, 2754, 2911
BmrFI CCNGG 6 cut(s) 360, 408, 771, 1217, 1491, 2609
BmrI ACTGGG 1 cut(s) 2467
BmsI GCATC 8 cut(s) 898, 1195, 1601, 2051, 2281, 2741, 2814, 2949
BmuI ACTGGG 1 cut(s) 2467
BpiI GAAGAC 3 cut(s) 2498, 2527, 2670
BplI GAGNNNNNCTC 2 cut(s) 2319, 2351
BpmI CTGGAG 2 cut(s) 1285, 1796
Bpu10I CCTNAGC 1 cut(s) 912
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 607
BpuMI CCSGG 2 cut(s) 360, 408
BsaBI GATNNNNATC 2 cut(s) 125, 1498
BsaHI GRCGYC 2 cut(s) 108, 2910
BsaJI CCNNGG 4 cut(s) 1216, 1532, 1817, 2756
BsaWI WCCGGW 2 cut(s) 479, 1797
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 8 cut(s) 94, 227, 407, 757, 1084, 1357, 1462, 2548
Bse118I RCCGGY 3 cut(s) 284, 433, 1293
Bse1I ACTGG 9 cut(s) 243, 678, 1302, 1320, 1456, 1756, 2375, 2462, 2542
Bse3DI GCAATG 1 cut(s) 1071
Bse8I GATNNNNATC 2 cut(s) 125, 1498
BseAI TCCGGA 1 cut(s) 479
BseBI CCWGG 4 cut(s) 771, 1217, 1491, 2609
BseDI CCNNGG 4 cut(s) 1216, 1532, 1817, 2756
BseGI GGATG 7 cut(s) 706, 1029, 1848, 2042, 2468, 2617, 2732
BseJI GATNNNNATC 2 cut(s) 125, 1498
BseLI CCNNNNNNNGG 8 cut(s) 94, 227, 407, 757, 1084, 1357, 1462, 2548
BseMI GCAATG 1 cut(s) 1071
BseMII CTCAG 3 cut(s) 903, 939, 1653
BseNI ACTGG 9 cut(s) 243, 678, 1302, 1320, 1456, 1756, 2375, 2462, 2542
BseRI GAGGAG 3 cut(s) 361, 1203, 1880
BseSI GKGCMC 1 cut(s) 1174
BseX3I CGGCCG 2 cut(s) 282, 431
BsgI GTGCAG 1 cut(s) 960
Bsh1236I CGCG 5 cut(s) 119, 176, 209, 1541, 2637
Bsh1285I CGRYCG 2 cut(s) 285, 434
BshNI GGYRCC 2 cut(s) 1754, 2909
BsiEI CGRYCG 2 cut(s) 285, 434
BsiHKAI GWGCWC 2 cut(s) 1174, 2314
BsiSI CCGG 9 cut(s) 57, 285, 360, 408, 434, 480, 1294, 1798, 2703
BslFI GGGAC 6 cut(s) 168, 441, 1550, 1644, 2250, 2629
BslI CCNNNNNNNGG 8 cut(s) 94, 227, 407, 757, 1084, 1357, 1462, 2548
BsmAI GTCTC 3 cut(s) 357, 408, 2339
BsmBI CGTCTC 2 cut(s) 357, 408
BsmFI GGGAC 6 cut(s) 168, 441, 1550, 1644, 2250, 2629
Bsp119I TTCGAA 1 cut(s) 215
Bsp1286I GDGCHC 4 cut(s) 88, 514, 1174, 2314
Bsp13I TCCGGA 1 cut(s) 479
Bsp1407I TGTACA 1 cut(s) 780
Bsp19I CCATGG 1 cut(s) 2756
Bsp68I TCGCGA 2 cut(s) 176, 209
BspCNI CTCAG 3 cut(s) 904, 940, 1652
BspEI TCCGGA 1 cut(s) 479
BspFNI CGCG 5 cut(s) 119, 176, 209, 1541, 2637
BspLI GGNNCC 6 cut(s) 198, 966, 1756, 2435, 2754, 2911
BspMAI CTGCAG 1 cut(s) 2571
BspMI ACCTGC 1 cut(s) 2571
BspPI GGATC 9 cut(s) 359, 959, 972, 1021, 1122, 1276, 1501, 2747, 2760
BspQI GCTCTTC 1 cut(s) 1020
BspT104I TTCGAA 1 cut(s) 215
BspT107I GGYRCC 2 cut(s) 1754, 2909
BspTI CTTAAG 2 cut(s) 647, 668
BsrDI GCAATG 1 cut(s) 1071
BsrFI RCCGGY 3 cut(s) 284, 433, 1293
BsrGI TGTACA 1 cut(s) 780
BsrI ACTGG 9 cut(s) 243, 678, 1302, 1320, 1456, 1756, 2375, 2462, 2542
BssAI RCCGGY 3 cut(s) 284, 433, 1293
BssECI CCNNGG 4 cut(s) 1216, 1532, 1817, 2756
BssNI GRCGYC 2 cut(s) 108, 2910
BssSI CACGAG 1 cut(s) 784
BssT1I CCWWGG 3 cut(s) 1532, 1817, 2756
Bst2BI CACGAG 1 cut(s) 784
Bst2UI CCWGG 4 cut(s) 771, 1217, 1491, 2609
Bst4CI ACNGT 7 cut(s) 37, 700, 815, 2429, 2655, 2669, 2857
Bst6I CTCTTC 3 cut(s) 1020, 1077, 2381
BstACI GRCGYC 2 cut(s) 108, 2910
BstAFI CTTAAG 2 cut(s) 647, 668
BstAPI GCANNNNNTGC 1 cut(s) 2738
BstAUI TGTACA 1 cut(s) 780
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 9 cut(s) 178, 286, 435, 1011, 1410, 1958, 2145, 2883, 2941
BstDEI CTNAG 5 cut(s) 912, 948, 1617, 1639, 2393
BstDSI CCRYGG 1 cut(s) 2756
BstEII GGTNACC 1 cut(s) 1733
BstF5I GGATG 7 cut(s) 706, 1029, 1848, 2042, 2468, 2617, 2732
BstFNI CGCG 5 cut(s) 119, 176, 209, 1541, 2637
BstH2I RGCGCY 2 cut(s) 796, 2913
BstHHI GCGC 6 cut(s) 795, 1675, 2244, 2607, 2637, 2912
BstMAI GTCTC 3 cut(s) 357, 408, 2339
BstMCI CGRYCG 2 cut(s) 285, 434
BstMWI GCNNNNNNNGC 7 cut(s) 234, 1718, 1727, 1829, 2526, 2738, 2882
BstNI CCWGG 4 cut(s) 771, 1217, 1491, 2609
BstNSI RCATGY 2 cut(s) 845, 1330
BstPI GGTNACC 1 cut(s) 1733
BstSCI CCNGG 6 cut(s) 358, 406, 769, 1215, 1489, 2607
BstSFI CTRYAG 3 cut(s) 1605, 2567, 2772
BstSLI GKGCMC 1 cut(s) 1174
BstUI CGCG 5 cut(s) 119, 176, 209, 1541, 2637
BstV2I GAAGAC 3 cut(s) 2498, 2527, 2670
BstX2I RGATCY 5 cut(s) 964, 1493, 2131, 2404, 2752
BstYI RGATCY 5 cut(s) 964, 1493, 2131, 2404, 2752
BstZI CGGCCG 2 cut(s) 282, 431
BtgI CCRYGG 1 cut(s) 2756
BtgZI GCGATG 4 cut(s) 267, 1575, 2300, 2786
BtrI CACGTC 2 cut(s) 271, 336
BtsCI GGATG 7 cut(s) 706, 1029, 1848, 2042, 2468, 2617, 2732
BtsI GCAGTG 1 cut(s) 2883
BtsIMutI CAGTG 9 cut(s) 705, 1309, 1327, 1463, 1941, 2549, 2674, 2693, 2883
BtuMI TCGCGA 2 cut(s) 176, 209
BveI ACCTGC 1 cut(s) 2571
Cac8I GCNNGC 9 cut(s) 178, 286, 435, 1011, 1410, 1958, 2145, 2883, 2941
CaiI CAGNNNCTG 1 cut(s) 911
CfoI GCGC 6 cut(s) 795, 1675, 2244, 2607, 2637, 2912
Cfr10I RCCGGY 3 cut(s) 284, 433, 1293
Cfr13I GGNCC 3 cut(s) 1213, 1296, 2560
CseI GACGC 2 cut(s) 1157, 1547
Csp6I GTAC 1 cut(s) 781
CviQI GTAC 1 cut(s) 781
DdeI CTNAG 5 cut(s) 912, 948, 1617, 1639, 2393
DinI GGCGCC 1 cut(s) 2911
EaeI YGGCCR 5 cut(s) 96, 282, 431, 1182, 1453
EagI CGGCCG 2 cut(s) 282, 431
Eam1104I CTCTTC 3 cut(s) 1020, 1077, 2381
EarI CTCTTC 3 cut(s) 1020, 1077, 2381
EciI GGCGGA 2 cut(s) 773, 2365
EclXI CGGCCG 2 cut(s) 282, 431
Eco130I CCWWGG 3 cut(s) 1532, 1817, 2756
Eco147I AGGCCT 2 cut(s) 738, 1960
Eco24I GRGCYC 2 cut(s) 88, 514
Eco47I GGWCC 2 cut(s) 1296, 2560
Eco52I CGGCCG 2 cut(s) 282, 431
Eco57I CTGAAG 3 cut(s) 222, 2521, 2717
Eco91I GGTNACC 1 cut(s) 1733
EcoO65I GGTNACC 1 cut(s) 1733
EcoRI GAATTC 4 cut(s) 211, 1612, 2173, 2353
EcoRII CCWGG 4 cut(s) 769, 1215, 1489, 2607
EcoT14I CCWWGG 3 cut(s) 1532, 1817, 2756
EcoT22I ATGCAT 2 cut(s) 1052, 2044
EcoT38I GRGCYC 2 cut(s) 88, 514
EgeI GGCGCC 1 cut(s) 2911
EheI GGCGCC 1 cut(s) 2911
ErhI CCWWGG 3 cut(s) 1532, 1817, 2756
Esp3I CGTCTC 2 cut(s) 357, 408
FaqI GGGAC 6 cut(s) 168, 441, 1550, 1644, 2250, 2629
FauI CCCGC 3 cut(s) 247, 316, 430
FauNDI CATATG 3 cut(s) 1414, 1579, 2270
FbaI TGATCA 5 cut(s) 1569, 1873, 2002, 2083, 2829
FblI GTMKAC 2 cut(s) 1528, 1792
FokI GGATG 7 cut(s) 693, 1036, 1835, 2029, 2455, 2624, 2719
FriOI GRGCYC 2 cut(s) 88, 514
FspBI CTAG 4 cut(s) 734, 867, 1034, 1199
FspI TGCGCA 1 cut(s) 2243
GlaI GCGC 6 cut(s) 794, 1674, 2243, 2606, 2636, 2911
GsuI CTGGAG 2 cut(s) 1285, 1796
HaeII RGCGCY 2 cut(s) 796, 2913
HapII CCGG 9 cut(s) 57, 285, 360, 408, 434, 480, 1294, 1798, 2703
HgaI GACGC 2 cut(s) 1157, 1547
HhaI GCGC 6 cut(s) 795, 1675, 2244, 2607, 2637, 2912
Hin1I GRCGYC 2 cut(s) 108, 2910
Hin6I GCGC 6 cut(s) 793, 1673, 2242, 2605, 2635, 2910
HinP1I GCGC 6 cut(s) 793, 1673, 2242, 2605, 2635, 2910
HincII GTYRAC 1 cut(s) 1283
HindII GTYRAC 1 cut(s) 1283
HindIII AAGCTT 1 cut(s) 2141
HpaII CCGG 9 cut(s) 57, 285, 360, 408, 434, 480, 1294, 1798, 2703
Hpy166II GTNNAC 9 cut(s) 783, 989, 1172, 1283, 1529, 1793, 2495, 2547, 2891
Hpy8I GTNNAC 9 cut(s) 783, 989, 1172, 1283, 1529, 1793, 2495, 2547, 2891
Hpy99I CGWCG 5 cut(s) 23, 53, 110, 337, 475
HpyCH4III ACNGT 7 cut(s) 37, 700, 815, 2429, 2655, 2669, 2857
HpyCH4IV ACGT 4 cut(s) 108, 270, 335, 662
HpyF10VI GCNNNNNNNGC 7 cut(s) 234, 1718, 1727, 1829, 2526, 2738, 2882
HpyF3I CTNAG 5 cut(s) 912, 948, 1617, 1639, 2393
HpySE526I ACGT 4 cut(s) 108, 270, 335, 662
Hsp92I GRCGYC 2 cut(s) 108, 2910
HspAI GCGC 6 cut(s) 793, 1673, 2242, 2605, 2635, 2910
KasI GGCGCC 1 cut(s) 2909
Kpn2I TCCGGA 1 cut(s) 479
KroI GCCGGC 2 cut(s) 284, 433
KroNI GCCGGC 2 cut(s) 286, 435
Ksp22I TGATCA 5 cut(s) 1569, 1873, 2002, 2083, 2829
LguI GCTCTTC 1 cut(s) 1020
LmnI GCTCC 2 cut(s) 202, 580
LweI GCATC 8 cut(s) 898, 1195, 1601, 2051, 2281, 2741, 2814, 2949
MaeI CTAG 4 cut(s) 734, 867, 1034, 1199
MaeII ACGT 4 cut(s) 108, 270, 335, 662
MflI RGATCY 5 cut(s) 964, 1493, 2131, 2404, 2752
MhlI GDGCHC 4 cut(s) 88, 514, 1174, 2314
MlsI TGGCCA 3 cut(s) 98, 1184, 1455
MluNI TGGCCA 3 cut(s) 98, 1184, 1455
Mly113I GGCGCC 1 cut(s) 2910
MlyI GAGTC 5 cut(s) 1063, 1537, 2113, 2398, 2611
MmeI TCCRAC 4 cut(s) 90, 916, 1054, 2692
Mox20I TGGCCA 3 cut(s) 98, 1184, 1455
Mph1103I ATGCAT 2 cut(s) 1052, 2044
MroI TCCGGA 1 cut(s) 479
MroNI GCCGGC 2 cut(s) 284, 433
MroXI GAANNNNTTC 1 cut(s) 2505
MscI TGGCCA 3 cut(s) 98, 1184, 1455
MseI TTAA 8 cut(s) 549, 648, 669, 1886, 1907, 1922, 2648, 2900
MslI CAYNNNNRTG 3 cut(s) 982, 2037, 2678
Msp20I TGGCCA 3 cut(s) 98, 1184, 1455
MspA1I CMGCKG 2 cut(s) 2771, 2896
MspCI CTTAAG 2 cut(s) 647, 668
MspI CCGG 9 cut(s) 57, 285, 360, 408, 434, 480, 1294, 1798, 2703
MspR9I CCNGG 6 cut(s) 360, 408, 771, 1217, 1491, 2609
MvaI CCWGG 4 cut(s) 771, 1217, 1491, 2609
MvnI CGCG 5 cut(s) 119, 176, 209, 1541, 2637
MwoI GCNNNNNNNGC 7 cut(s) 234, 1718, 1727, 1829, 2526, 2738, 2882
NaeI GCCGGC 2 cut(s) 286, 435
NarI GGCGCC 1 cut(s) 2910
NciI CCSGG 2 cut(s) 360, 408
NcoI CCATGG 1 cut(s) 2756
NdeI CATATG 3 cut(s) 1414, 1579, 2270
NgoMIV GCCGGC 2 cut(s) 284, 433
NlaIV GGNNCC 6 cut(s) 198, 966, 1756, 2435, 2754, 2911
NmeAIII GCCGAG 2 cut(s) 173, 2351
NmuCI GTSAC 9 cut(s) 109, 266, 773, 1145, 1322, 1360, 1733, 2669, 2691
NruI TCGCGA 2 cut(s) 176, 209
NsbI TGCGCA 1 cut(s) 2243
NsiI ATGCAT 2 cut(s) 1052, 2044
NspI RCATGY 2 cut(s) 845, 1330
NspV TTCGAA 1 cut(s) 215
OliI CACNNNNGTG 1 cut(s) 982
PceI AGGCCT 2 cut(s) 738, 1960
PciI ACATGT 1 cut(s) 1326
PciSI GCTCTTC 1 cut(s) 1020
PcsI WCGNNNNNNNCGW 1 cut(s) 2323
PdiI GCCGGC 2 cut(s) 286, 435
PdmI GAANNNNTTC 1 cut(s) 2505
PfeI GAWTC 7 cut(s) 53, 476, 1194, 1475, 2465, 2623, 2764
PleI GAGTC 5 cut(s) 1063, 1537, 2112, 2397, 2611
PluTI GGCGCC 1 cut(s) 2913
PpsI GAGTC 5 cut(s) 1063, 1537, 2112, 2397, 2611
PscI ACATGT 1 cut(s) 1326
Psp6I CCWGG 4 cut(s) 769, 1215, 1489, 2607
PspEI GGTNACC 1 cut(s) 1733
PspGI CCWGG 4 cut(s) 769, 1215, 1489, 2607
PspN4I GGNNCC 6 cut(s) 198, 966, 1756, 2435, 2754, 2911
PspPI GGNCC 3 cut(s) 1213, 1296, 2560
PstI CTGCAG 1 cut(s) 2571
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 5 cut(s) 964, 1493, 2131, 2404, 2752
PvuII CAGCTG 1 cut(s) 2771
RruI TCGCGA 2 cut(s) 176, 209
RsaI GTAC 1 cut(s) 782
RsaNI GTAC 1 cut(s) 781
RseI CAYNNNNRTG 3 cut(s) 982, 2037, 2678
SapI GCTCTTC 1 cut(s) 1020
SaqAI TTAA 8 cut(s) 549, 648, 669, 1886, 1907, 1922, 2648, 2900
Sau96I GGNCC 3 cut(s) 1213, 1296, 2560
SchI GAGTC 5 cut(s) 1063, 1537, 2113, 2398, 2611
ScrFI CCNGG 6 cut(s) 360, 408, 771, 1217, 1491, 2609
SduI GDGCHC 4 cut(s) 88, 514, 1174, 2314
SfaNI GCATC 8 cut(s) 898, 1195, 1601, 2051, 2281, 2741, 2814, 2949
SfcI CTRYAG 3 cut(s) 1605, 2567, 2772
SfoI GGCGCC 1 cut(s) 2911
SfuI TTCGAA 1 cut(s) 215
SinI GGWCC 2 cut(s) 1296, 2560
SmiMI CAYNNNNRTG 3 cut(s) 982, 2037, 2678
SmlI CTYRAG 3 cut(s) 586, 647, 668
SmoI CTYRAG 3 cut(s) 586, 647, 668
SseBI AGGCCT 2 cut(s) 738, 1960
SspDI GGCGCC 1 cut(s) 2909
SspI AATATT 2 cut(s) 850, 2126
SspMI CTAG 4 cut(s) 734, 867, 1034, 1199
StuI AGGCCT 2 cut(s) 738, 1960
StyD4I CCNGG 6 cut(s) 358, 406, 769, 1215, 1489, 2607
StyI CCWWGG 3 cut(s) 1532, 1817, 2756
TaaI ACNGT 7 cut(s) 37, 700, 815, 2429, 2655, 2669, 2857
TaiI ACGT 4 cut(s) 111, 273, 338, 665
TaqI TCGA 7 cut(s) 51, 135, 215, 332, 555, 2107, 2859
TatI WGTACW 1 cut(s) 780
TauI GCSGC 3 cut(s) 119, 231, 315
TfiI GAWTC 7 cut(s) 53, 476, 1194, 1475, 2465, 2623, 2764
Tru1I TTAA 8 cut(s) 549, 648, 669, 1886, 1907, 1922, 2648, 2900
Tru9I TTAA 8 cut(s) 549, 648, 669, 1886, 1907, 1922, 2648, 2900
TscAI CASTG 9 cut(s) 705, 1309, 1327, 1463, 1948, 2549, 2674, 2700, 2883
TseFI GTSAC 9 cut(s) 109, 266, 773, 1145, 1322, 1360, 1733, 2669, 2691
Tsp45I GTSAC 9 cut(s) 109, 266, 773, 1145, 1322, 1360, 1733, 2669, 2691
TspGWI ACGGA 2 cut(s) 488, 987
TspRI CASTG 9 cut(s) 705, 1309, 1327, 1463, 1948, 2549, 2674, 2700, 2883
Vha464I CTTAAG 2 cut(s) 647, 668
VneI GTGCAC 1 cut(s) 1170
VpaK11BI GGWCC 2 cut(s) 1296, 2560
XapI RAATTY 9 cut(s) 211, 761, 1160, 1598, 1612, 1997, 2173, 2353, 2719
XbaI TCTAGA 1 cut(s) 866
XceI RCATGY 2 cut(s) 845, 1330
XmiI GTMKAC 2 cut(s) 1528, 1792
XmnI GAANNNNTTC 1 cut(s) 2505
XspI CTAG 4 cut(s) 734, 867, 1034, 1199
ZraI GACGTC 1 cut(s) 109
Zsp2I ATGCAT 2 cut(s) 1052, 2044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.