Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002288

Physical Location & Seq

Genomic Coordinates Reverse (-)

34205238 .. 34208598

Gene Structure 3361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGTCTTGGTGATACACAAGAATATTGGGATCTGAATAAGCTTGCTAGACGGTTCTTAAAAGGCAGCCGGAATTCTGTGGAAGGGAAAGGCAAAGATGCGCCTTCACGGGCTTATGTTCAAGAAGTTGTTGAAGAAATACACAAGGGGGAACTGGGAGAATGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTATTGACACCTTGTGCTCATCACTTATGCCGTGAATGTCTGTTGGCAAGTTGGCAGAATATCAACTTCTGGCTTGTGTCCGGTTTGCAGGAAGAGTGTAAGCAAGCAAGATCCAATTACAGCACCGAGAGTCGGTTCCATGTTGATATTGAGAAAAACTGGGTGGAATCATCCAAAATAGTTCTTCTTTTGCATGAGCTTGAATGTCTTCGTTCATCAGGCTCAAAGAGCATTGTCTTCAGCCAGTGGACGGCCTTTCCGGACCTCTGGCAGACATCTCTTTCTCGGAGTAACATTCCGTTTCTTCGCCTGGATGGGACTCTGAATCAACAGCAGTGCGAAACACTATTAAAACAGTTTTCAGAAGACAGTGACACTCTGGTGTTGCTAATGTCACTGAAGGCCGGAGGAGTTGGAATTAATTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

208

Amino Acids

23.6

Weight (kDa)

5.3

Isoelectric Point (pI)

63.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	53 - 80	7.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	54 - 82	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	54 - 81	3e-06	Ring finger domain
zf-RING_UBOX	PF13445	55 - 84	3e-09	RING-type zinc-finger
zf-C3HC4	PF00097	55 - 84	1.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4	PF15227	55 - 85	8.2e-06	zinc finger of C3HC4-type, RING
Helicase_C	PF00271	126 - 207	7.9e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22750
fragaria_vesca	FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660
malus_domestica	MD17G1018000.v1.1
prunus_persica	Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1
pyrus_communis	pycom17g01450
rosa_chinensis	RchiOBHm_Chr2g0174191 RchiOBHm_Chr4g0410751
rosa_laevigata	RLG00000022255 RLG00000022256 RLG00000029588
rosa_multiflora	Rmu_sc0000954.1_g000002 Rmu_ssc0000198.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078340 Rroxscaffold_2G00078370 Rroxscaffold_5G00355500
rosa_rugosa	Rorug02G0575800 Rorug02G0575900 Rorug02G0576000 Rorug04G0376700
rosa_samantha	Rh2AG655200 Rh2BG666400 Rh2CG630600 Rh2DG681000 Rh4AG162800 Rh4BG161900 Rh4BG162000 Rh4DG158500 Rh7CG048600
rosa_wichuraiana	Rw2G053780 Rw4G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	454
AclWI	GGATC	2 cut(s)	39, 300
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	2 cut(s)	418, 614
AdeI	CACNNNGTG	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	327, 445
AgsI	TTSAA	6 cut(s)	122, 134, 179, 188, 398, 622
AjnI	CCWGG	1 cut(s)	504
AleI	CACNNNNGTG	1 cut(s)	575
AluBI	AGCT	2 cut(s)	43, 394
AluI	AGCT	2 cut(s)	43, 394
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	39, 300
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	2 cut(s)	447, 597
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	73
AseI	ATTAAT	1 cut(s)	615
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	457
BbsI	GAAGAC	3 cut(s)	395, 424, 567
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	2 cut(s)	210, 462
BciT130I	CCWGG	1 cut(s)	506
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	2 cut(s)	164, 364
BmsI	GCATC	2 cut(s)	88, 181
BmuI	ACTGGG	2 cut(s)	164, 364
BpiI	GAAGAC	3 cut(s)	395, 424, 567
BsaWI	WCCGGW	2 cut(s)	275, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 445
Bse1I	ACTGG	3 cut(s)	159, 359, 439
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	506
BseGI	GGATG	2 cut(s)	365, 514
BseLI	CCNNNNNNNGG	2 cut(s)	327, 445
BseNI	ACTGG	3 cut(s)	159, 359, 439
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	1 cut(s)	78
BshFI	GGCC	2 cut(s)	449, 599
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	4 cut(s)	70, 276, 455, 600
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	2 cut(s)	327, 445
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	449, 599
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	31, 305
BspANI	GGCC	2 cut(s)	449, 599
BspEI	TCCGGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	2 cut(s)	39, 300
BsrI	ACTGG	3 cut(s)	159, 359, 439
BssMI	GATC	2 cut(s)	31, 305
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	3 cut(s)	54, 552, 566
Bst6I	CTCTTC	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	45, 300
BstF5I	GGATG	2 cut(s)	365, 514
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	2 cut(s)	34, 308
BstMBI	GATC	2 cut(s)	31, 305
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	3 cut(s)	395, 424, 567
BstX2I	RGATCY	2 cut(s)	31, 305
BstYI	RGATCY	2 cut(s)	31, 305
BsuRI	GGCC	2 cut(s)	449, 599
BtsCI	GGATG	2 cut(s)	365, 514
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	4 cut(s)	446, 536, 571, 590
Cac8I	GCNNGC	2 cut(s)	45, 300
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	457
CviAII	CATG	2 cut(s)	335, 389
CviJI	RGCY	9 cut(s)	43, 69, 113, 268, 394, 417, 438, 449, 599
CviKI_1	RGCY	9 cut(s)	43, 69, 113, 268, 394, 417, 438, 449, 599
DpnI	GATC	2 cut(s)	33, 307
DpnII	GATC	2 cut(s)	31, 305
DraIII	CACNNNGTG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	457
Eco57I	CTGAAG	2 cut(s)	418, 614
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	504
FaeI	CATG	2 cut(s)	338, 392
FaiI	YATR	5 cut(s)	117, 172, 223, 336, 390
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	2 cut(s)	334, 388
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	2 cut(s)	352, 521
Fsp4HI	GCNGC	1 cut(s)	67
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	449, 599
HapII	CCGG	4 cut(s)	70, 276, 455, 600
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	338, 392
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	5 cut(s)	4, 325, 362, 514, 520
HpaII	CCGG	4 cut(s)	70, 276, 455, 600
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	4 cut(s)	36, 483, 519, 559
Hpy188III	TCNNGA	3 cut(s)	122, 176, 455
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	3 cut(s)	77, 114, 589
HpyCH4III	ACNGT	3 cut(s)	54, 552, 566
HpyCH4V	TGCA	3 cut(s)	194, 283, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	338, 392
HspAI	GCGC	1 cut(s)	101
Kpn2I	TCCGGA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	31, 305
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	2 cut(s)	88, 181
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	3 cut(s)	485, 566, 588
MalI	GATC	2 cut(s)	33, 307
MboI	GATC	2 cut(s)	31, 305
MboII	GAAGA	8 cut(s)	146, 200, 299, 371, 395, 424, 491, 572
MflI	RGATCY	2 cut(s)	31, 305
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	5 cut(s)	73, 310, 612, 616, 622
MlyI	GAGTC	3 cut(s)	13, 334, 508
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	2 cut(s)	470, 596
MroI	TCCGGA	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	3 cut(s)	59, 545, 615
MslI	CAYNNNNRTG	1 cut(s)	575
MspI	CCGG	4 cut(s)	70, 276, 455, 600
MspR9I	CCNGG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	423
NdeII	GATC	2 cut(s)	31, 305
NlaIII	CATG	2 cut(s)	338, 392
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	2 cut(s)	566, 588
OliI	CACNNNNGTG	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	362, 520
PkrI	GCNGC	1 cut(s)	68
PleI	GAGTC	3 cut(s)	12, 333, 508
PpsI	GAGTC	3 cut(s)	12, 333, 508
PshBI	ATTAAT	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	31, 305
RseI	CAYNNNNRTG	1 cut(s)	575
SaqAI	TTAA	3 cut(s)	59, 545, 615
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	2 cut(s)	31, 305
Sau96I	GGNCC	1 cut(s)	457
SchI	GAGTC	3 cut(s)	13, 334, 508
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	4 cut(s)	45, 208, 396, 462
SfaNI	GCATC	2 cut(s)	88, 181
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	5 cut(s)	73, 310, 612, 616, 622
SspI	AATATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	54, 552, 566
TasI	AATT	5 cut(s)	73, 310, 612, 616, 622
TfiI	GAWTC	2 cut(s)	362, 520
Tru1I	TTAA	3 cut(s)	59, 545, 615
Tru9I	TTAA	3 cut(s)	59, 545, 615
TscAI	CASTG	4 cut(s)	446, 536, 571, 597
TseFI	GTSAC	2 cut(s)	566, 588
TseI	GCWGC	1 cut(s)	66
Tsp45I	GTSAC	2 cut(s)	566, 588
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	4 cut(s)	446, 536, 571, 597
VpaK11BI	GGWCC	1 cut(s)	457
VspI	ATTAAT	1 cut(s)	615
XapI	RAATTY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.