RLG00000029588

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002288
Physical Location & Seq
Forward (+)
40788812 .. 40792074
3263 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029588

Sequence Viewer

Length: 510 bp
ATGGTATTTGTGGCTCTTATATCAGGTGTGAAGAAGGAAGCTGACACCTGTCAGGAGCTGAGAGCAGAACGTGTTGATTACGCCAGAAGAGAGATGACTACATGCGGCGAGAATTCACCGGCGACTTGTACCAGTTTAGTCTTCGGGCTATCTCAGATCCAGATCGAGCGTTCTCCTTGGAATCGTCCCCGAATTCTGTATCCTTCTCTCATCGTCATCTCGGTCATCGTTGTCCTTCTCCCCCAATTTGACTCAGCTCCTCGAATCGGATTCACCTCCGCGATTTCGAATAAGTCAATCGATTGGCTGCGGCGCATTCTTTGGGCAGAGATTGAATCTCATGTGCAACCTGGATCTGTATCAGTATATGTTCATTATGGACAAAATAATTGTGCTAAACCAACCAGAGTTGCAGTTGATAATGCCTCGGGCAGGAAAGCCAGTTTGATTAAGTTTTGCCGTAGATGGTGCAAATGGGGATTAGTTCATGGCTGTGTTTCATGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.99

Weight (kDa)

9.26

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 281
AciI CCGC 3 cut(s) 105, 279, 310
AclWI GGATC 2 cut(s) 151, 361
AcsI RAATTY 2 cut(s) 112, 192
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 266, 432
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 1 cut(s) 335
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 3 cut(s) 41, 58, 257
AluI AGCT 3 cut(s) 41, 58, 257
AlwI GGATC 2 cut(s) 151, 361
AlwNI CAGNNNCTG 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 427
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 2 cut(s) 112, 192
AspLEI GCGC 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 108, 265
AsuII TTCGAA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 427
BbsI GAAGAC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 294
BccI CCATC 1 cut(s) 459
BceAI ACGGC 1 cut(s) 444
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 210
BfuI GTATCC 1 cut(s) 210
BisI GCNGC 3 cut(s) 106, 308, 311
BlsI GCNGC 3 cut(s) 107, 309, 312
Bme1390I CCNGG 1 cut(s) 351
BmeT110I CYCGRG 1 cut(s) 427
BmrFI CCNGG 1 cut(s) 351
BoxI GACNNNNGTC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 133
Bpu14I TTCGAA 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 300
BsaBI GATNNNNATC 2 cut(s) 161, 358
BsaJI CCNNGG 2 cut(s) 176, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 432
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 132, 441
Bse8I GATNNNNATC 2 cut(s) 161, 358
BseBI CCWGG 1 cut(s) 351
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 176, 426
BseJI GATNNNNATC 2 cut(s) 161, 358
BseLI CCNNNNNNNGG 2 cut(s) 266, 432
BseMII CTCAG 3 cut(s) 50, 167, 267
BseNI ACTGG 2 cut(s) 132, 441
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 281
BshVI ATCGAT 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 427
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 266, 432
BsmFI GGGAC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 427
Bsp119I TTCGAA 1 cut(s) 287
Bsp143I GATC 3 cut(s) 156, 162, 353
BspACI CCGC 3 cut(s) 105, 279, 310
BspCNI CTCAG 3 cut(s) 51, 166, 266
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 1 cut(s) 281
BspPI GGATC 2 cut(s) 151, 361
BspT104I TTCGAA 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 2 cut(s) 132, 441
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 176, 426
BssMI GATC 3 cut(s) 156, 162, 353
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 287
BstDEI CTNAG 3 cut(s) 59, 153, 253
BstENI CCTNNNNNAGG 1 cut(s) 430
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 3 cut(s) 159, 165, 356
BstMBI GATC 3 cut(s) 156, 162, 353
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 105
BstPAI GACNNNNGTC 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 349
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 156, 353
BstYI RGATCY 2 cut(s) 156, 353
Bsu15I ATCGAT 1 cut(s) 300
BsuI GTATCC 1 cut(s) 210
BsuTUI ATCGAT 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 118
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 1 cut(s) 129
CviAII CATG 4 cut(s) 102, 341, 488, 501
CviJI RGCY 8 cut(s) 14, 41, 58, 148, 257, 307, 440, 492
CviKI_1 RGCY 8 cut(s) 14, 41, 58, 148, 257, 307, 440, 492
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 3 cut(s) 59, 153, 253
DpnI GATC 3 cut(s) 158, 164, 355
DpnII GATC 3 cut(s) 156, 162, 353
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 427
EcoNI CCTNNNNNAGG 1 cut(s) 430
EcoRI GAATTC 2 cut(s) 112, 192
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 4 cut(s) 105, 344, 491, 504
FaiI YATR 8 cut(s) 20, 103, 342, 367, 369, 378, 489, 502
FaqI GGGAC 1 cut(s) 171
FatI CATG 4 cut(s) 101, 340, 487, 500
Fnu4HI GCNGC 3 cut(s) 106, 308, 311
Fsp4HI GCNGC 3 cut(s) 106, 308, 311
GlaI GCGC 1 cut(s) 314
GluI GCNGC 3 cut(s) 106, 308, 311
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 315
Hin1II CATG 4 cut(s) 105, 344, 491, 504
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 5 cut(s) 181, 251, 264, 270, 335
HpaII CCGG 1 cut(s) 119
HphI GGTGA 2 cut(s) 108, 265
Hpy188I TCNGA 2 cut(s) 156, 269
Hpy188III TCNNGA 2 cut(s) 53, 160
HpyAV CCTTC 3 cut(s) 28, 213, 245
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 3 cut(s) 346, 413, 471
HpyF3I CTNAG 3 cut(s) 59, 153, 253
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 4 cut(s) 105, 344, 491, 504
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 3 cut(s) 156, 162, 353
LmnI GCTCC 2 cut(s) 55, 262
Lsp1109I GCAGC 1 cut(s) 294
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 503
MalI GATC 3 cut(s) 158, 164, 355
MboI GATC 3 cut(s) 156, 162, 353
MboII GAAGA 3 cut(s) 43, 99, 133
MflI RGATCY 2 cut(s) 156, 353
MluCI AATT 4 cut(s) 112, 192, 245, 388
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 3 cut(s) 270, 286, 436
MseI TTAA 1 cut(s) 450
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 1 cut(s) 281
NdeII GATC 3 cut(s) 156, 162, 353
NlaIII CATG 4 cut(s) 105, 344, 491, 504
NspI RCATGY 1 cut(s) 105
NspV TTCGAA 1 cut(s) 287
PctI GAATGC 1 cut(s) 315
PfeI GAWTC 4 cut(s) 181, 264, 270, 335
PkrI GCNGC 3 cut(s) 107, 309, 312
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PshAI GACNNNNGTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 2 cut(s) 156, 353
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 3 cut(s) 106, 308, 311
Sau3AI GATC 3 cut(s) 156, 162, 353
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 351
SetI ASST 8 cut(s) 28, 43, 50, 60, 73, 259, 278, 352
SfuI TTCGAA 1 cut(s) 287
SgrAI CRCCGGYG 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 492
Sse9I AATT 4 cut(s) 112, 192, 245, 388
SsiI CCGC 3 cut(s) 105, 279, 310
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 1 cut(s) 176
TaiI ACGT 1 cut(s) 73
TaqI TCGA 4 cut(s) 165, 262, 287, 300
TaqII GACCGA 1 cut(s) 211
TasI AATT 4 cut(s) 112, 192, 245, 388
TauI GCSGC 2 cut(s) 108, 313
TfiI GAWTC 4 cut(s) 181, 264, 270, 335
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TseI GCWGC 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 362, 476, 489
XagI CCTNNNNNAGG 1 cut(s) 430
XapI RAATTY 2 cut(s) 112, 192
XceI RCATGY 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.