Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002288

Physical Location & Seq

Genomic Coordinates Reverse (-)

41282084 .. 41283694

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG162800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGTCGAGATGATACACAAGAATATTCGGATCTGAATAAGCTTGCTAGACGGTTCTTAAAAGGCAGCCGGAATTCTGTGGAAGGGGAAGCCAAAGATGCGCCTTCACGGCTTATGTTCAAGAAGTTGTTGAAGAAATACACAAGGGGGAACAGGGAGAATAATTTCGATTTCTGGCTTGTGTCCGGTTTGCAGGAGTGTAAGCAAGCAAGATCCAATTACAGCACCAAGAGTCAGTTCTATGTTGATATTGAGAAAAACTGGGTGGAATCATCCAAAATAGTTCTTCTTCTTTTGTGTGAGCTTGAATGTCTTCGTTCATCAGGCTCAAAGAGCATTGTCTTCAGCCAGTGGACGGCCTTTCTGGACCTCCTGCACATTTATCTTTCTCGGAGTAACATTCCTGACATTCTGGTGGTTGCTAATGTCACTGAAGGCCGGAGGAGTTGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

151

Amino Acids

17.57

Weight (kDa)

9.32

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22750
fragaria_vesca	FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660
malus_domestica	MD17G1018000.v1.1
prunus_persica	Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1
pyrus_communis	pycom17g01450
rosa_chinensis	RchiOBHm_Chr2g0174191 RchiOBHm_Chr4g0410751
rosa_laevigata	RLG00000022255 RLG00000022256 RLG00000029588
rosa_multiflora	Rmu_sc0000954.1_g000002 Rmu_ssc0000198.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078340 Rroxscaffold_2G00078370 Rroxscaffold_5G00355500
rosa_rugosa	Rorug02G0575800 Rorug02G0575900 Rorug02G0576000 Rorug04G0376700
rosa_samantha	Rh2AG655200 Rh2BG666400 Rh2CG630600 Rh2DG681000 Rh4AG162800 Rh4BG161900 Rh4BG162000 Rh4DG158500 Rh7CG048600
rosa_wichuraiana	Rw2G053780 Rw4G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	39, 207
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	2 cut(s)	328, 453
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	121, 133, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	2 cut(s)	43, 304
AluI	AGCT	2 cut(s)	43, 304
AlwI	GGATC	2 cut(s)	39, 207
AoxI	GGCC	2 cut(s)	357, 436
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	73
Asp700I	GAANNNNTTC	2 cut(s)	164, 312
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	305, 334
BbvI	GCAGC	1 cut(s)	78
BceAI	ACGGC	2 cut(s)	125, 372
BfaI	CTAG	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	271
BpiI	GAAGAC	2 cut(s)	305, 334
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	2 cut(s)	266, 349
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseNI	ACTGG	2 cut(s)	266, 349
BseXI	GCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	359, 438
BsiSI	CCGG	3 cut(s)	70, 186, 439
BslI	CCNNNNNNNGG	1 cut(s)	355
BsnI	GGCC	2 cut(s)	359, 438
Bsp143I	GATC	2 cut(s)	31, 212
BspANI	GGCC	2 cut(s)	359, 438
BspPI	GGATC	2 cut(s)	39, 207
BsrI	ACTGG	2 cut(s)	266, 349
BssMI	GATC	2 cut(s)	31, 212
Bst4CI	ACNGT	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	45, 207
BstF5I	GGATG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	2 cut(s)	34, 215
BstMBI	GATC	2 cut(s)	31, 212
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 109, 333
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	2 cut(s)	305, 334
BstX2I	RGATCY	2 cut(s)	31, 212
BstYI	RGATCY	2 cut(s)	31, 212
BsuRI	GGCC	2 cut(s)	359, 438
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	2 cut(s)	356, 429
Cac8I	GCNNGC	2 cut(s)	45, 207
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	367
DpnI	GATC	2 cut(s)	33, 214
DpnII	GATC	2 cut(s)	31, 212
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	328, 453
EcoRI	GAATTC	1 cut(s)	73
FaiI	YATR	2 cut(s)	116, 243
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	1 cut(s)	67
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	359, 438
HapII	CCGG	3 cut(s)	70, 186, 439
HhaI	GCGC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	4, 232, 269
HpaII	CCGG	3 cut(s)	70, 186, 439
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	3 cut(s)	31, 36, 393
Hpy188III	TCNNGA	4 cut(s)	8, 121, 365, 404
Hpy8I	GTNNAC	1 cut(s)	354
HpyAV	CCTTC	3 cut(s)	77, 114, 428
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	193, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 109, 333
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	2 cut(s)	31, 212
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	395, 427
MalI	GATC	2 cut(s)	33, 214
MboI	GATC	2 cut(s)	31, 212
MboII	GAAGA	5 cut(s)	145, 278, 281, 305, 334
MflI	RGATCY	2 cut(s)	31, 212
MluCI	AATT	4 cut(s)	73, 163, 217, 451
MlyI	GAGTC	2 cut(s)	13, 241
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	2 cut(s)	380, 435
MroXI	GAANNNNTTC	2 cut(s)	164, 312
MseI	TTAA	2 cut(s)	59, 454
MslI	CAYNNNNRTG	1 cut(s)	413
MspI	CCGG	3 cut(s)	70, 186, 439
MwoI	GCNNNNNNNGC	3 cut(s)	98, 109, 333
NdeII	GATC	2 cut(s)	31, 212
NmuCI	GTSAC	1 cut(s)	427
PdmI	GAANNNNTTC	2 cut(s)	164, 312
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	68
PleI	GAGTC	2 cut(s)	12, 240
PpsI	GAGTC	2 cut(s)	12, 240
PspPI	GGNCC	1 cut(s)	367
PsuI	RGATCY	2 cut(s)	31, 212
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	59, 454
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	2 cut(s)	31, 212
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	2 cut(s)	13, 241
SetI	ASST	3 cut(s)	45, 306, 372
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	4 cut(s)	73, 163, 217, 451
SspI	AATATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	7, 168
TasI	AATT	4 cut(s)	73, 163, 217, 451
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	59, 454
Tru9I	TTAA	2 cut(s)	59, 454
TscAI	CASTG	2 cut(s)	356, 436
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	356, 436
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	1 cut(s)	73
XmnI	GAANNNNTTC	2 cut(s)	164, 312
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.