Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000954.1

Orthogroup ID

OG0002288

Physical Location & Seq

Genomic Coordinates Reverse (-)

2195 .. 8194

Gene Structure 6000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000954.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2976 bp

atgggcaacaaaatcaccgacgaactattatccaccgttcgttcaatcgtcgattccggctactccgacatggacataatccgagccctacacatggccaacaacgacgtcaccgccgcgatcaacatcatcttcgacacccccacacccaaatctaaagaaaggtcagatttcgccagcagtcccaaaatctcgagtcctgaagtcgcgaattcgaagccgaacggcgccgattgccccgccagttcaggcgatgatgtagtaggtgacgtggagagttcggccggcagcgagtggtggttggtgggttgcggcgaggtggcggggttatcgacgtgtagagggaggaggatcaagccccgagacgaagtggatttcacatttcctttgaagatttcgccgtctcccggcaaggttttcgggaggggacggccggcggcggcgtgttcggagattgtgaggttctccacgacggattccggagagtgtttgatgaataatgtgtttggattgatggggttttcgcagattggacgaataccgaaggaatgggctcggtgtctgttgccacttgtgagagataagaaggttaaaatcgaggggcattgtaaatctgctcctgatgtcttgagcattatggacaccattctcttgtctataagtgtgtatatcaatagttctatgttctttaagcaaaagcagacctcacttaagacagccagtaattccacagaggaaacagtcgttcatcctctcccaacattgtttcagttgctaggcctaactcctttccagaaggcggaatttactcctggtgacttgtacacgagaaagcgccctttagaccaaaaggacagttctgggctttgtgcctcaattatacatgcaaataagcataaaaatccttctagaaatgaagatgaagttgaaaatgaggaatgtatttcagatgctgaggttgataacattgttggggttggagatagctctgagttagaggaaatggatcctcctgctgcacttctgtgtgaacttcgtccgtatcaaaagcaggctcttcattggatgatccaactagaaaagggaaaatgcatggatgaggcagcaatgactcttcacccttgttgggaggcatatcatcttgcagacaagagggaccgtattatatatttgaacgcattttctggtgacgcaacaacagaatttccaagcgcacttcaaatggccagaggaggaatcctagctgatgctatgggcctgggaaagacgattatgacaatagcactccttgttgctcattcaggacatggatcatcaggtagtcaacctgtgagccggtcctccagtgaagatattgaagccagtgacatgtcagaatattcatcaaaactcccaaaggcggcagagattgaatctcatgtgcaacctggatctgtatcagtatatgttcattatggacaaagtagaccaagggatgcgactcttttagccctaagcgatgttgtgatcactacatatggcgttttagcatcagaattttctacagagaattctaaggacaatgggggactttactcagttagttggtttagagtggttcttgatgaagcgcacaccataaaatcctctaaaagccaaatctctattgctgctgctgctttagttgctggtcgccgatggtgtcttactggcacccctatacagaacaatctggaggacatttatagtctactccggtttttgagggtagaaccttgggcgaattgggcttggtggaataaactcatccagaaaccctttgaggagggtgatgagagagggttaaggctggttcaatctatcttaaagacgattatgttaaggagaaccaagtttagcactgatcgtgaaggcaggcctattttagtccttccgcctgctgatattcaggtggtttactgtgaactcacagaaactgaaaaagacttttatgaggccttgtttaaaagatcaaaggtaaaatttgatcaatttgttgagcaaggacgggttcttcataattatgcgtccatattggaattacttttacgccttcgccaatgttgtgatcacccatttcttgtgatgagtcgaggtgatacacaagaattttcagatctgaataagcttgcaagacattttctaaaaggcagccagaattctgtggaaggggaagccaaagatgtgccttcacgggcttatgttcaggaagttgttgaagaaatgcgcaagggggaacagggagagtgtcccatatgtcttgaagcatttgaagatgcagtattgacaacttgtgctcatcgcttatgccgagaatgtctcttggcaagttggcggaattcaacttctggcttatgtccagtttgcaggaagagtctaagtaagcaagatcttgttacagcaccaactgacagtcggttccatgttgatattgagaaaaactgggtggaatcatccaaaatagttattcttttgcgtgaacttgaatgtcttcgttcgtcaggctcaaagagcattgtcttcagccagtggacggcctttctggacctcctgcagatacctctttctcggagtaacattccatttttgcgcctggatgggactctgaatcaacagcagcgcgaaaaagttttaaaacagttttcagaagacagtgacattctggtgttgctaatgtcactgaaggccggaggagttggaataaatttgacagcagcatccaatgcctttgtcttggatccatggtggaatccagctgtagaggaacaagcggtcatgcgtattcatcgcatcggacaaacaaaaagtgtgatgatcaaacgatttatcgtgaagggaacagtcgaggaaagaatggaagcagtgcaagctcgtaaacagcggttaatttctggcgccttgactgaccaagaagttcgttcggctcgcatagaagaactaaagatgctttttacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

991

Amino Acids

110.25

Weight (kDa)

5.93

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22750
fragaria_vesca	FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660
malus_domestica	MD17G1018000.v1.1
prunus_persica	Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1
pyrus_communis	pycom17g01450
rosa_chinensis	RchiOBHm_Chr2g0174191 RchiOBHm_Chr4g0410751
rosa_laevigata	RLG00000022255 RLG00000022256 RLG00000029588
rosa_multiflora	Rmu_sc0000954.1_g000002 Rmu_ssc0000198.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078340 Rroxscaffold_2G00078370 Rroxscaffold_5G00355500
rosa_rugosa	Rorug02G0575800 Rorug02G0575900 Rorug02G0576000 Rorug04G0376700
rosa_samantha	Rh2AG655200 Rh2BG666400 Rh2CG630600 Rh2DG681000 Rh4AG162800 Rh4BG161900 Rh4BG162000 Rh4DG158500 Rh7CG048600
rosa_wichuraiana	Rw2G053780 Rw4G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
Acc16I	TGCGCA	1 cut(s)	2246
AccB1I	GGYRCC	3 cut(s)	227, 1691, 2912
AccI	GTMKAC	2 cut(s)	1465, 1729
AccII	CGCG	3 cut(s)	119, 209, 2640
AccIII	TCCGGA	1 cut(s)	479
AclWI	GGATC	8 cut(s)	359, 1001, 1014, 1063, 1318, 1438, 2750, 2763
AcoI	YGGCCR	4 cut(s)	96, 282, 431, 1224
AcuI	CTGAAG	3 cut(s)	222, 2524, 2720
AcyI	GRCGYC	3 cut(s)	108, 228, 2913
AfaI	GTAC	1 cut(s)	824
AfiI	CCNNNNNNNGG	6 cut(s)	94, 407, 799, 1126, 1399, 2551
AflII	CTTAAG	1 cut(s)	710
AflIII	ACRYGT	2 cut(s)	335, 1368
AjiI	CACGTC	2 cut(s)	271, 336
AjnI	CCWGG	4 cut(s)	811, 1257, 1426, 2610
AleI	CACNNNNGTG	1 cut(s)	1024
AluBI	AGCT	5 cut(s)	987, 1244, 2146, 2774, 2888
AluI	AGCT	5 cut(s)	987, 1244, 2146, 2774, 2888
Alw21I	GWGCWC	1 cut(s)	2317
Alw26I	GTCTC	3 cut(s)	357, 408, 2342
AlwI	GGATC	8 cut(s)	359, 1001, 1014, 1063, 1318, 1438, 2750, 2763
AlwNI	CAGNNNCTG	2 cut(s)	953, 1955
Ama87I	CYCGRG	2 cut(s)	193, 360
Aor13HI	TCCGGA	1 cut(s)	479
ApeKI	GCWGC	9 cut(s)	288, 1016, 1103, 1649, 1652, 1655, 2169, 2635, 2732
Asp700I	GAANNNNTTC	1 cut(s)	2508
AspLEI	GCGC	8 cut(s)	230, 837, 1214, 1612, 2247, 2610, 2640, 2915
AspS9I	GGNCC	4 cut(s)	1156, 1255, 1338, 2563
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	9 cut(s)	7, 103, 278, 827, 1109, 1199, 1820, 2081, 2126
AsuII	TTCGAA	1 cut(s)	215
AvaI	CYCGRG	2 cut(s)	193, 360
AvaII	GGWCC	3 cut(s)	1156, 1338, 2563
BalI	TGGCCA	2 cut(s)	98, 1226
BamHI	GGATCC	2 cut(s)	1006, 2755
BanI	GGYRCC	3 cut(s)	227, 1691, 2912
BanII	GRGCYC	2 cut(s)	88, 556
BauI	CACGAG	1 cut(s)	826
BbsI	GAAGAC	3 cut(s)	2501, 2530, 2673
Bbv12I	GWGCWC	1 cut(s)	2317
BbvCI	CCTCAGC	1 cut(s)	954
BbvI	GCAGC	9 cut(s)	300, 1003, 1115, 1636, 1639, 1642, 2181, 2647, 2744
BccI	CCATC	3 cut(s)	508, 1671, 2609
BceAI	ACGGC	4 cut(s)	241, 385, 446, 2568
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	4 cut(s)	813, 1259, 1428, 2612
BclI	TGATCA	4 cut(s)	1506, 2005, 2086, 2832
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	3 cut(s)	357, 408, 2342
BfaI	CTAG	4 cut(s)	776, 909, 1076, 1241
BfmI	CTRYAG	3 cut(s)	1542, 2570, 2775
BfoI	RGCGCY	3 cut(s)	231, 838, 2916
BfrI	CTTAAG	1 cut(s)	710
BglII	AGATCT	2 cut(s)	2134, 2407
Bme1390I	CCNGG	5 cut(s)	408, 813, 1259, 1428, 2612
Bme18I	GGWCC	3 cut(s)	1156, 1338, 2563
BmeT110I	CYCGRG	2 cut(s)	193, 360
BmgBI	CACGTC	2 cut(s)	271, 336
BmgT120I	GGNCC	4 cut(s)	1156, 1255, 1338, 2563
BmiI	GGNNCC	7 cut(s)	229, 1008, 1157, 1693, 2438, 2757, 2914
BmrFI	CCNGG	5 cut(s)	408, 813, 1259, 1428, 2612
BmrI	ACTGGG	1 cut(s)	2470
BmsI	GCATC	8 cut(s)	940, 1237, 1465, 1538, 2284, 2744, 2817, 2952
BmuI	ACTGGG	1 cut(s)	2470
BpiI	GAAGAC	3 cut(s)	2501, 2530, 2673
BplI	GAGNNNNNCTC	2 cut(s)	2322, 2354
BpmI	CTGGAG	2 cut(s)	1327, 1733
Bpu10I	CCTNAGC	2 cut(s)	954, 1493
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	649
BpuMI	CCSGG	1 cut(s)	408
BsaBI	GATNNNNATC	2 cut(s)	125, 1435
BsaHI	GRCGYC	3 cut(s)	108, 228, 2913
BsaJI	CCNNGG	4 cut(s)	1258, 1469, 1754, 2759
BsaWI	WCCGGW	2 cut(s)	479, 1734
Bsc4I	CCNNNNNNNGG	6 cut(s)	94, 407, 799, 1126, 1399, 2551
Bse118I	RCCGGY	3 cut(s)	284, 433, 1335
Bse1I	ACTGG	8 cut(s)	243, 720, 1344, 1362, 1693, 2378, 2465, 2545
Bse3DI	GCAATG	1 cut(s)	1113
Bse8I	GATNNNNATC	2 cut(s)	125, 1435
BseAI	TCCGGA	1 cut(s)	479
BseBI	CCWGG	4 cut(s)	813, 1259, 1428, 2612
BseDI	CCNNGG	4 cut(s)	1258, 1469, 1754, 2759
BseGI	GGATG	8 cut(s)	748, 1071, 1102, 1480, 1785, 2471, 2620, 2735
BseJI	GATNNNNATC	2 cut(s)	125, 1435
BseLI	CCNNNNNNNGG	6 cut(s)	94, 407, 799, 1126, 1399, 2551
BseMI	GCAATG	1 cut(s)	1113
BseMII	CTCAG	3 cut(s)	945, 981, 1590
BseNI	ACTGG	8 cut(s)	243, 720, 1344, 1362, 1693, 2378, 2465, 2545
BseRI	GAGGAG	4 cut(s)	361, 1245, 1817, 2724
BseX3I	CGGCCG	2 cut(s)	282, 431
BseXI	GCAGC	9 cut(s)	300, 1003, 1115, 1636, 1639, 1642, 2181, 2647, 2744
BsgI	GTGCAG	1 cut(s)	1002
Bsh1236I	CGCG	3 cut(s)	119, 209, 2640
Bsh1285I	CGRYCG	2 cut(s)	285, 434
BshNI	GGYRCC	3 cut(s)	227, 1691, 2912
BsiEI	CGRYCG	2 cut(s)	285, 434
BsiHKAI	GWGCWC	1 cut(s)	2317
BsiHKCI	CYCGRG	2 cut(s)	193, 360
BsiSI	CCGG	8 cut(s)	57, 285, 408, 434, 480, 1336, 1735, 2706
BslFI	GGGAC	6 cut(s)	168, 441, 1169, 1581, 2253, 2632
BslI	CCNNNNNNNGG	6 cut(s)	94, 407, 799, 1126, 1399, 2551
BsmAI	GTCTC	3 cut(s)	357, 408, 2342
BsmBI	CGTCTC	2 cut(s)	357, 408
BsmFI	GGGAC	6 cut(s)	168, 441, 1169, 1581, 2253, 2632
BsoBI	CYCGRG	2 cut(s)	193, 360
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	88, 556, 2317
Bsp13I	TCCGGA	1 cut(s)	479
Bsp1407I	TGTACA	1 cut(s)	822
Bsp19I	CCATGG	1 cut(s)	2759
Bsp68I	TCGCGA	1 cut(s)	209
BspCNI	CTCAG	3 cut(s)	946, 982, 1589
BspEI	TCCGGA	1 cut(s)	479
BspFNI	CGCG	3 cut(s)	119, 209, 2640
BspLI	GGNNCC	7 cut(s)	229, 1008, 1157, 1693, 2438, 2757, 2914
BspMAI	CTGCAG	1 cut(s)	2574
BspPI	GGATC	8 cut(s)	359, 1001, 1014, 1063, 1318, 1438, 2750, 2763
BspQI	GCTCTTC	1 cut(s)	1062
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	3 cut(s)	227, 1691, 2912
BspTI	CTTAAG	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	1113
BsrFI	RCCGGY	3 cut(s)	284, 433, 1335
BsrGI	TGTACA	1 cut(s)	822
BsrI	ACTGG	8 cut(s)	243, 720, 1344, 1362, 1693, 2378, 2465, 2545
BssAI	RCCGGY	3 cut(s)	284, 433, 1335
BssECI	CCNNGG	4 cut(s)	1258, 1469, 1754, 2759
BssNI	GRCGYC	3 cut(s)	108, 228, 2913
BssSI	CACGAG	1 cut(s)	826
BssT1I	CCWWGG	3 cut(s)	1469, 1754, 2759
Bst2BI	CACGAG	1 cut(s)	826
Bst2UI	CCWGG	4 cut(s)	813, 1259, 1428, 2612
Bst4CI	ACNGT	9 cut(s)	37, 742, 857, 1160, 1940, 2432, 2658, 2672, 2860
Bst6I	CTCTTC	3 cut(s)	1062, 1119, 2384
BstACI	GRCGYC	3 cut(s)	108, 228, 2913
BstAFI	CTTAAG	1 cut(s)	710
BstAPI	GCANNNNNTGC	1 cut(s)	2741
BstAUI	TGTACA	1 cut(s)	822
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	9 cut(s)	178, 286, 435, 1053, 1895, 1917, 2148, 2886, 2944
BstDEI	CTNAG	6 cut(s)	954, 990, 1493, 1554, 1576, 2396
BstDSI	CCRYGG	1 cut(s)	2759
BstF5I	GGATG	8 cut(s)	748, 1071, 1102, 1480, 1785, 2471, 2620, 2735
BstFNI	CGCG	3 cut(s)	119, 209, 2640
BstH2I	RGCGCY	3 cut(s)	231, 838, 2916
BstHHI	GCGC	8 cut(s)	230, 837, 1214, 1612, 2247, 2610, 2640, 2915
BstMAI	GTCTC	3 cut(s)	357, 408, 2342
BstMCI	CGRYCG	2 cut(s)	285, 434
BstMWI	GCNNNNNNNGC	7 cut(s)	234, 1655, 1664, 1766, 2529, 2741, 2885
BstNI	CCWGG	4 cut(s)	813, 1259, 1428, 2612
BstNSI	RCATGY	2 cut(s)	887, 1372
BstSCI	CCNGG	5 cut(s)	406, 811, 1257, 1426, 2610
BstSFI	CTRYAG	3 cut(s)	1542, 2570, 2775
BstUI	CGCG	3 cut(s)	119, 209, 2640
BstV1I	GCAGC	9 cut(s)	300, 1003, 1115, 1636, 1639, 1642, 2181, 2647, 2744
BstV2I	GAAGAC	3 cut(s)	2501, 2530, 2673
BstX2I	RGATCY	5 cut(s)	1006, 1430, 2134, 2407, 2755
BstYI	RGATCY	5 cut(s)	1006, 1430, 2134, 2407, 2755
BstZI	CGGCCG	2 cut(s)	282, 431
BtgI	CCRYGG	1 cut(s)	2759
BtgZI	GCGATG	4 cut(s)	267, 1512, 2303, 2789
BtrI	CACGTC	2 cut(s)	271, 336
BtsCI	GGATG	8 cut(s)	748, 1071, 1102, 1480, 1785, 2471, 2620, 2735
BtsI	GCAGTG	1 cut(s)	2886
BtsIMutI	CAGTG	7 cut(s)	1351, 1369, 1878, 2552, 2677, 2696, 2886
BtuMI	TCGCGA	1 cut(s)	209
Cac8I	GCNNGC	9 cut(s)	178, 286, 435, 1053, 1895, 1917, 2148, 2886, 2944
CaiI	CAGNNNCTG	2 cut(s)	953, 1955
CfoI	GCGC	8 cut(s)	230, 837, 1214, 1612, 2247, 2610, 2640, 2915
Cfr10I	RCCGGY	3 cut(s)	284, 433, 1335
Cfr13I	GGNCC	4 cut(s)	1156, 1255, 1338, 2563
CseI	GACGC	2 cut(s)	1199, 2034
Csp6I	GTAC	1 cut(s)	823
CviQI	GTAC	1 cut(s)	823
DdeI	CTNAG	6 cut(s)	954, 990, 1493, 1554, 1576, 2396
DinI	GGCGCC	2 cut(s)	229, 2914
DraI	TTTAAA	2 cut(s)	1984, 2652
EaeI	YGGCCR	4 cut(s)	96, 282, 431, 1224
EagI	CGGCCG	2 cut(s)	282, 431
Eam1104I	CTCTTC	3 cut(s)	1062, 1119, 2384
EarI	CTCTTC	3 cut(s)	1062, 1119, 2384
EciI	GGCGGA	3 cut(s)	815, 1902, 2368
EclXI	CGGCCG	2 cut(s)	282, 431
Eco130I	CCWWGG	3 cut(s)	1469, 1754, 2759
Eco147I	AGGCCT	3 cut(s)	780, 1897, 1976
Eco24I	GRGCYC	2 cut(s)	88, 556
Eco47I	GGWCC	3 cut(s)	1156, 1338, 2563
Eco52I	CGGCCG	2 cut(s)	282, 431
Eco57I	CTGAAG	3 cut(s)	222, 2524, 2720
Eco88I	CYCGRG	2 cut(s)	193, 360
EcoRI	GAATTC	4 cut(s)	211, 1549, 2176, 2356
EcoRII	CCWGG	4 cut(s)	811, 1257, 1426, 2610
EcoT14I	CCWWGG	3 cut(s)	1469, 1754, 2759
EcoT22I	ATGCAT	1 cut(s)	1094
EcoT38I	GRGCYC	2 cut(s)	88, 556
EgeI	GGCGCC	2 cut(s)	229, 2914
EheI	GGCGCC	2 cut(s)	229, 2914
ErhI	CCWWGG	3 cut(s)	1469, 1754, 2759
Esp3I	CGTCTC	2 cut(s)	357, 408
FaqI	GGGAC	6 cut(s)	168, 441, 1169, 1581, 2253, 2632
FauI	CCCGC	2 cut(s)	247, 316
FauNDI	CATATG	2 cut(s)	1516, 2273
FbaI	TGATCA	4 cut(s)	1506, 2005, 2086, 2832
FblI	GTMKAC	2 cut(s)	1465, 1729
FokI	GGATG	8 cut(s)	735, 1078, 1109, 1487, 1772, 2458, 2627, 2722
FriOI	GRGCYC	2 cut(s)	88, 556
FspBI	CTAG	4 cut(s)	776, 909, 1076, 1241
FspI	TGCGCA	1 cut(s)	2246
GlaI	GCGC	8 cut(s)	229, 836, 1213, 1611, 2246, 2609, 2639, 2914
GsuI	CTGGAG	2 cut(s)	1327, 1733
HaeII	RGCGCY	3 cut(s)	231, 838, 2916
HapII	CCGG	8 cut(s)	57, 285, 408, 434, 480, 1336, 1735, 2706
HgaI	GACGC	2 cut(s)	1199, 2034
HhaI	GCGC	8 cut(s)	230, 837, 1214, 1612, 2247, 2610, 2640, 2915
Hin1I	GRCGYC	3 cut(s)	108, 228, 2913
Hin6I	GCGC	8 cut(s)	228, 835, 1212, 1610, 2245, 2608, 2638, 2913
HinP1I	GCGC	8 cut(s)	228, 835, 1212, 1610, 2245, 2608, 2638, 2913
HincII	GTYRAC	1 cut(s)	1325
HindII	GTYRAC	1 cut(s)	1325
HindIII	AAGCTT	1 cut(s)	2144
HpaII	CCGG	8 cut(s)	57, 285, 408, 434, 480, 1336, 1735, 2706
HphI	GGTGA	9 cut(s)	7, 103, 278, 827, 1109, 1199, 1820, 2081, 2126
Hpy99I	CGWCG	5 cut(s)	23, 53, 110, 337, 475
HpyCH4III	ACNGT	9 cut(s)	37, 742, 857, 1160, 1940, 2432, 2658, 2672, 2860
HpyCH4IV	ACGT	3 cut(s)	108, 270, 335
HpyF10VI	GCNNNNNNNGC	7 cut(s)	234, 1655, 1664, 1766, 2529, 2741, 2885
HpyF3I	CTNAG	6 cut(s)	954, 990, 1493, 1554, 1576, 2396
HpySE526I	ACGT	3 cut(s)	108, 270, 335
Hsp92I	GRCGYC	3 cut(s)	108, 228, 2913
HspAI	GCGC	8 cut(s)	228, 835, 1212, 1610, 2245, 2608, 2638, 2913
KasI	GGCGCC	2 cut(s)	227, 2912
Kpn2I	TCCGGA	1 cut(s)	479
KroI	GCCGGC	2 cut(s)	284, 433
KroNI	GCCGGC	2 cut(s)	286, 435
Ksp22I	TGATCA	4 cut(s)	1506, 2005, 2086, 2832
LguI	GCTCTTC	1 cut(s)	1062
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	9 cut(s)	300, 1003, 1115, 1636, 1639, 1642, 2181, 2647, 2744
LweI	GCATC	8 cut(s)	940, 1237, 1465, 1538, 2284, 2744, 2817, 2952
MaeI	CTAG	4 cut(s)	776, 909, 1076, 1241
MaeII	ACGT	3 cut(s)	108, 270, 335
MaeIII	GTNAC	9 cut(s)	109, 266, 815, 1187, 1364, 2413, 2591, 2672, 2694
MflI	RGATCY	5 cut(s)	1006, 1430, 2134, 2407, 2755
MhlI	GDGCHC	3 cut(s)	88, 556, 2317
MlsI	TGGCCA	2 cut(s)	98, 1226
MluNI	TGGCCA	2 cut(s)	98, 1226
Mly113I	GGCGCC	2 cut(s)	228, 2913
MlyI	GAGTC	6 cut(s)	205, 1105, 1474, 2116, 2401, 2614
MmeI	TCCRAC	4 cut(s)	90, 958, 1096, 2695
Mox20I	TGGCCA	2 cut(s)	98, 1226
Mph1103I	ATGCAT	1 cut(s)	1094
MroI	TCCGGA	1 cut(s)	479
MroNI	GCCGGC	2 cut(s)	284, 433
MroXI	GAANNNNTTC	1 cut(s)	2508
MscI	TGGCCA	2 cut(s)	98, 1226
MseI	TTAA	9 cut(s)	591, 690, 711, 1823, 1844, 1859, 1983, 2651, 2903
MslI	CAYNNNNRTG	3 cut(s)	1024, 2040, 2681
Msp20I	TGGCCA	2 cut(s)	98, 1226
MspA1I	CMGCKG	2 cut(s)	2774, 2899
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	8 cut(s)	57, 285, 408, 434, 480, 1336, 1735, 2706
MspR9I	CCNGG	5 cut(s)	408, 813, 1259, 1428, 2612
MvaI	CCWGG	4 cut(s)	813, 1259, 1428, 2612
MvnI	CGCG	3 cut(s)	119, 209, 2640
MwoI	GCNNNNNNNGC	7 cut(s)	234, 1655, 1664, 1766, 2529, 2741, 2885
NaeI	GCCGGC	2 cut(s)	286, 435
NarI	GGCGCC	2 cut(s)	228, 2913
NciI	CCSGG	1 cut(s)	408
NcoI	CCATGG	1 cut(s)	2759
NdeI	CATATG	2 cut(s)	1516, 2273
NgoMIV	GCCGGC	2 cut(s)	284, 433
NlaIV	GGNNCC	7 cut(s)	229, 1008, 1157, 1693, 2438, 2757, 2914
NmeAIII	GCCGAG	1 cut(s)	2354
NmuCI	GTSAC	7 cut(s)	109, 266, 815, 1187, 1364, 2672, 2694
NruI	TCGCGA	1 cut(s)	209
NsbI	TGCGCA	1 cut(s)	2246
NsiI	ATGCAT	1 cut(s)	1094
NspI	RCATGY	2 cut(s)	887, 1372
NspV	TTCGAA	1 cut(s)	215
OliI	CACNNNNGTG	1 cut(s)	1024
PaeR7I	CTCGAG	1 cut(s)	193
PceI	AGGCCT	3 cut(s)	780, 1897, 1976
PciI	ACATGT	1 cut(s)	1368
PciSI	GCTCTTC	1 cut(s)	1062
PcsI	WCGNNNNNNNCGW	1 cut(s)	2326
PdiI	GCCGGC	2 cut(s)	286, 435
PdmI	GAANNNNTTC	1 cut(s)	2508
PfeI	GAWTC	7 cut(s)	53, 476, 1236, 1412, 2468, 2626, 2767
PleI	GAGTC	6 cut(s)	204, 1105, 1474, 2115, 2400, 2614
PluTI	GGCGCC	2 cut(s)	231, 2916
PpsI	GAGTC	6 cut(s)	204, 1105, 1474, 2115, 2400, 2614
PscI	ACATGT	1 cut(s)	1368
Psp6I	CCWGG	4 cut(s)	811, 1257, 1426, 2610
PspGI	CCWGG	4 cut(s)	811, 1257, 1426, 2610
PspN4I	GGNNCC	7 cut(s)	229, 1008, 1157, 1693, 2438, 2757, 2914
PspPI	GGNCC	4 cut(s)	1156, 1255, 1338, 2563
PstI	CTGCAG	1 cut(s)	2574
PstNI	CAGNNNCTG	2 cut(s)	953, 1955
PsuI	RGATCY	5 cut(s)	1006, 1430, 2134, 2407, 2755
PvuII	CAGCTG	1 cut(s)	2774
RruI	TCGCGA	1 cut(s)	209
RsaI	GTAC	1 cut(s)	824
RsaNI	GTAC	1 cut(s)	823
RseI	CAYNNNNRTG	3 cut(s)	1024, 2040, 2681
SapI	GCTCTTC	1 cut(s)	1062
SaqAI	TTAA	9 cut(s)	591, 690, 711, 1823, 1844, 1859, 1983, 2651, 2903
Sau96I	GGNCC	4 cut(s)	1156, 1255, 1338, 2563
SchI	GAGTC	6 cut(s)	205, 1105, 1474, 2116, 2401, 2614
ScrFI	CCNGG	5 cut(s)	408, 813, 1259, 1428, 2612
SduI	GDGCHC	3 cut(s)	88, 556, 2317
SfaNI	GCATC	8 cut(s)	940, 1237, 1465, 1538, 2284, 2744, 2817, 2952
SfcI	CTRYAG	3 cut(s)	1542, 2570, 2775
SfoI	GGCGCC	2 cut(s)	229, 2914
Sfr274I	CTCGAG	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	3 cut(s)	1156, 1338, 2563
SlaI	CTCGAG	1 cut(s)	193
SmiMI	CAYNNNNRTG	3 cut(s)	1024, 2040, 2681
SmlI	CTYRAG	3 cut(s)	193, 628, 710
SmoI	CTYRAG	3 cut(s)	193, 628, 710
SseBI	AGGCCT	3 cut(s)	780, 1897, 1976
SspDI	GGCGCC	2 cut(s)	227, 2912
SspI	AATATT	1 cut(s)	1379
SspMI	CTAG	4 cut(s)	776, 909, 1076, 1241
StuI	AGGCCT	3 cut(s)	780, 1897, 1976
StyD4I	CCNGG	5 cut(s)	406, 811, 1257, 1426, 2610
StyI	CCWWGG	3 cut(s)	1469, 1754, 2759
TaaI	ACNGT	9 cut(s)	37, 742, 857, 1160, 1940, 2432, 2658, 2672, 2860
TaiI	ACGT	3 cut(s)	111, 273, 338
TaqI	TCGA	8 cut(s)	51, 135, 194, 215, 332, 597, 2110, 2862
TatI	WGTACW	1 cut(s)	822
TauI	GCSGC	5 cut(s)	119, 315, 440, 443, 1403
TfiI	GAWTC	7 cut(s)	53, 476, 1236, 1412, 2468, 2626, 2767
Tru1I	TTAA	9 cut(s)	591, 690, 711, 1823, 1844, 1859, 1983, 2651, 2903
Tru9I	TTAA	9 cut(s)	591, 690, 711, 1823, 1844, 1859, 1983, 2651, 2903
TscAI	CASTG	7 cut(s)	1351, 1369, 1885, 2552, 2677, 2703, 2886
TseFI	GTSAC	7 cut(s)	109, 266, 815, 1187, 1364, 2672, 2694
TseI	GCWGC	9 cut(s)	288, 1016, 1103, 1649, 1652, 1655, 2169, 2635, 2732
Tsp45I	GTSAC	7 cut(s)	109, 266, 815, 1187, 1364, 2672, 2694
TspGWI	ACGGA	2 cut(s)	488, 1029
TspRI	CASTG	7 cut(s)	1351, 1369, 1885, 2552, 2677, 2703, 2886
Vha464I	CTTAAG	1 cut(s)	710
VpaK11BI	GGWCC	3 cut(s)	1156, 1338, 2563
XbaI	TCTAGA	1 cut(s)	908
XceI	RCATGY	2 cut(s)	887, 1372
XhoI	CTCGAG	1 cut(s)	193
XmiI	GTMKAC	2 cut(s)	1465, 1729
XmnI	GAANNNNTTC	1 cut(s)	2508
XspI	CTAG	4 cut(s)	776, 909, 1076, 1241
ZraI	GACGTC	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.