Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002288

Physical Location & Seq

Genomic Coordinates Reverse (-)

70066417 .. 70066795

Gene Structure 379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0575900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGTCATGGCCGGAAACACTTTTCTTCTCTCAGAGATTTTCTTAGTAAAGGCTATGGTTCTTGCTCCACATCAATACGCCTATTTGTTTTTGATCCGGAGACTTTCACGTTTCCAAAAGATTTCAGGAAGACTTGCTCTCCACCATTGCCTCGTCTCAAAGAACTTGAGGTTGACATTGTCGACAACCATCCATCAGAGAAAATAGATTCTGAATTCTGGGACTCCTTGCAGTGGATGGCACCTTATGCAGCCCTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

87

Amino Acids

10.07

Weight (kDa)

6.26

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22750
fragaria_vesca	FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660
malus_domestica	MD17G1018000.v1.1
prunus_persica	Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1
pyrus_communis	pycom17g01450
rosa_chinensis	RchiOBHm_Chr2g0174191 RchiOBHm_Chr4g0410751
rosa_laevigata	RLG00000022255 RLG00000022256 RLG00000029588
rosa_multiflora	Rmu_sc0000954.1_g000002 Rmu_ssc0000198.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078340 Rroxscaffold_2G00078370 Rroxscaffold_5G00355500
rosa_rugosa	Rorug02G0575800 Rorug02G0575900 Rorug02G0576000 Rorug04G0376700
rosa_samantha	Rh2AG655200 Rh2BG666400 Rh2CG630600 Rh2DG681000 Rh4AG162800 Rh4BG161900 Rh4BG162000 Rh4DG158500 Rh7CG048600
rosa_wichuraiana	Rw2G053780 Rw4G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	97
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	95, 161
AlwI	GGATC	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	137
BccI	CCATC	3 cut(s)	198, 202, 232
BcoDI	GTCTC	2 cut(s)	95, 161
BfaI	CTAG	1 cut(s)	262
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	146
BseAI	TCCGGA	1 cut(s)	97
BseGI	GGATG	2 cut(s)	190, 243
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	12
BshNI	GGYRCC	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	13, 98
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	95, 161
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	12
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	45
BspEI	TCCGGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	146
BssMI	GATC	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	32, 44, 257
BstF5I	GGATG	2 cut(s)	190, 243
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	2 cut(s)	95, 161
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	190, 243
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	239
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	4 cut(s)	12, 54, 254, 261
CviKI_1	RGCY	4 cut(s)	12, 54, 254, 261
DdeI	CTNAG	3 cut(s)	32, 44, 257
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	215
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	1 cut(s)	11
FaiI	YATR	3 cut(s)	9, 57, 249
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	2 cut(s)	177, 250
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	262
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	12
HapII	CCGG	2 cut(s)	13, 98
Hin1II	CATG	1 cut(s)	11
HincII	GTYRAC	2 cut(s)	175, 184
HindII	GTYRAC	2 cut(s)	175, 184
HinfI	GANTC	3 cut(s)	4, 209, 224
HpaII	CCGG	2 cut(s)	13, 98
Hpy166II	GTNNAC	2 cut(s)	175, 184
Hpy188I	TCNGA	3 cut(s)	35, 199, 214
Hpy188III	TCNNGA	2 cut(s)	98, 127
Hpy8I	GTNNAC	2 cut(s)	175, 184
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	232, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	3 cut(s)	32, 44, 257
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	11
Kpn2I	TCCGGA	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	4 cut(s)	26, 111, 112, 205
MaeI	CTAG	1 cut(s)	262
MaeII	ACGT	1 cut(s)	110
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	2 cut(s)	18, 142
MluCI	AATT	1 cut(s)	215
MlyI	GAGTC	2 cut(s)	13, 218
MnlI	CCTC	2 cut(s)	162, 163
MroI	TCCGGA	1 cut(s)	97
MspI	CCGG	2 cut(s)	13, 98
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	209
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	2 cut(s)	12, 218
PpsI	GAGTC	2 cut(s)	12, 218
PspN4I	GGNNCC	1 cut(s)	243
PsyI	GACNNNGTC	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	182
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	94
SchI	GAGTC	2 cut(s)	13, 218
SetI	ASST	4 cut(s)	113, 174, 247, 263
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	262
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	209
TscAI	CASTG	1 cut(s)	239
TseI	GCWGC	1 cut(s)	251
TspRI	CASTG	1 cut(s)	239
Tth111I	GACNNNGTC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.