Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002288

Physical Location & Seq

Genomic Coordinates Reverse (-)

31716316 .. 31722990

Gene Structure 6675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGGTTGGTTCTACACAGTACACCGTACACACGAGCCATACAAAGACAAAAACCTATTGGGCTGAATGTCGTTTGGGAGTGAATGTGGGATTTGGGGAAGTGAAAGACAATGAGTGGGGGAGAAACAAGAGAGGATTGGCAGTTGTGGCGGGCGGGTGGAATAAACTCATCCAGAAACCCTTTGAGGAGGGTGATGAGAGAGGGTTAAAGCTGGTTCAATCTATCTTGAAGACGATTATGTTAGGGAGAACCAAGTTTAGCATTGATCGTGAAGGCCGGCAGCCGGATTCTGTGGAAGGGGAAGCCAAAGATGCGCCTTCACGGGCTTATTATCAAGAAGTTGTTGAAGAAATACACAAGGGGGAACAGGGAGAATGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTATTGACACCTTGTGTTCATCACTTATGCCGTGAATGTCTCTTGGCAAGTTGGCAGAATTTTGACTTCTGGCTTGTGTCCGGTTTGCAGGAGGAGTGTAAGCAAGCAAGATCCAATTACAGCACCGAGAGTCAGTTCTATGTTGATATTGAGAAAAACTGGGTGGAATCATCCAAAATAGTTCTTCTTCTTTTGTACTACGAAGATGCCGAGATTCGGAGCCACGACTTCAATTTCGAAATCAAGCAACCGCACATCAATGTCCAGTTCGACGATGACGGAGGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044764 GO:0045003 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

233

Amino Acids

26.66

Weight (kDa)

5.03

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	126 - 154	4.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	126 - 153	8.9e-06	Ring finger domain
zf-RING_UBOX	PF13445	127 - 156	1.1e-08	RING-type zinc-finger
zf-C3HC4	PF00097	127 - 155	4.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22750
fragaria_vesca	FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660 FvH4_6g52660
malus_domestica	MD17G1018000.v1.1
prunus_persica	Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1 Prupe.3G300100_v2.0.a1
pyrus_communis	pycom17g01450
rosa_chinensis	RchiOBHm_Chr2g0174191 RchiOBHm_Chr4g0410751
rosa_laevigata	RLG00000022255 RLG00000022256 RLG00000029588
rosa_multiflora	Rmu_sc0000954.1_g000002 Rmu_ssc0000198.1_g000002
rosa_roxburghii	Rroxscaffold_2G00078340 Rroxscaffold_2G00078370 Rroxscaffold_5G00355500
rosa_rugosa	Rorug02G0575800 Rorug02G0575900 Rorug02G0576000 Rorug04G0376700
rosa_samantha	Rh2AG655200 Rh2BG666400 Rh2CG630600 Rh2DG681000 Rh4AG162800 Rh4BG161900 Rh4BG162000 Rh4DG158500 Rh7CG048600
rosa_wichuraiana	Rw2G053780 Rw4G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 152, 156, 662
AclWI	GGATC	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	469
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	3 cut(s)	23, 30, 608
AfiI	CCNNNNNNNGG	2 cut(s)	286, 627
AgsI	TTSAA	6 cut(s)	221, 232, 350, 395, 404, 643
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	516
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AspLEI	GCGC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	206
AsuII	TTCGAA	1 cut(s)	648
BauI	CACGAG	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	295
BceAI	ACGGC	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	455
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	632
BmrI	ACTGGG	1 cut(s)	580
BmsI	GCATC	3 cut(s)	304, 397, 607
BmuI	ACTGGG	1 cut(s)	580
BpiI	GAAGAC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	648
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 627
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	575, 676
BseGI	GGATG	2 cut(s)	171, 581
BseLI	CCNNNNNNNGG	2 cut(s)	286, 627
BseNI	ACTGG	2 cut(s)	575, 676
BseRI	GAGGAG	2 cut(s)	203, 518
BseXI	GCAGC	1 cut(s)	295
BshFI	GGCC	1 cut(s)	279
BsiSI	CCGG	3 cut(s)	280, 287, 492
BslI	CCNNNNNNNGG	2 cut(s)	286, 627
BsmAI	GTCTC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	648
Bsp143I	GATC	2 cut(s)	268, 521
BspACI	CCGC	4 cut(s)	5, 152, 156, 662
BspANI	GGCC	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	632
BspPI	GGATC	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	575, 676
BssAI	RCCGGY	1 cut(s)	279
BssMI	GATC	2 cut(s)	268, 521
BssSI	CACGAG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	21, 28
BstBI	TTCGAA	1 cut(s)	648
BstC8I	GCNNGC	3 cut(s)	154, 281, 516
BstF5I	GGATG	2 cut(s)	171, 581
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	2 cut(s)	271, 524
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	2 cut(s)	268, 521
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 314
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	171, 581
Cac8I	GCNNGC	3 cut(s)	154, 281, 516
CfoI	GCGC	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	279
Csp6I	GTAC	3 cut(s)	22, 29, 607
CviJI	RGCY	9 cut(s)	39, 65, 214, 279, 286, 308, 329, 484, 633
CviKI_1	RGCY	9 cut(s)	39, 65, 214, 279, 286, 308, 329, 484, 633
CviQI	GTAC	3 cut(s)	22, 29, 607
DpnI	GATC	2 cut(s)	270, 523
DpnII	GATC	2 cut(s)	268, 521
DraIII	CACNNNGTG	1 cut(s)	425
FaiI	YATR	5 cut(s)	42, 242, 388, 439, 552
FauI	CCCGC	2 cut(s)	145, 149
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	2 cut(s)	158, 568
Fsp4HI	GCNGC	1 cut(s)	284
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	3 cut(s)	280, 287, 492
HhaI	GCGC	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	4 cut(s)	290, 541, 578, 625
HpaII	CCGG	3 cut(s)	280, 287, 492
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	24, 31
Hpy188I	TCNGA	1 cut(s)	630
Hpy188III	TCNNGA	5 cut(s)	175, 229, 272, 338, 392
Hpy8I	GTNNAC	2 cut(s)	24, 31
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	3 cut(s)	269, 293, 330
HpyCH4III	ACNGT	2 cut(s)	21, 28
HpyCH4V	TGCA	2 cut(s)	410, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 314
HspAI	GCGC	1 cut(s)	317
KroI	GCCGGC	1 cut(s)	279
KroNI	GCCGGC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	268, 521
LmnI	GCTCC	1 cut(s)	630
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	3 cut(s)	304, 397, 607
MalI	GATC	2 cut(s)	270, 523
MboI	GATC	2 cut(s)	268, 521
MboII	GAAGA	6 cut(s)	244, 362, 416, 587, 590, 626
MflI	RGATCY	1 cut(s)	521
MluCI	AATT	3 cut(s)	469, 526, 643
MlyI	GAGTC	1 cut(s)	550
MnlI	CCTC	6 cut(s)	128, 181, 184, 197, 496, 686
MroNI	GCCGGC	1 cut(s)	279
MseI	TTAA	2 cut(s)	209, 700
MslI	CAYNNNNRTG	1 cut(s)	669
MspI	CCGG	3 cut(s)	280, 287, 492
MwoI	GCNNNNNNNGC	2 cut(s)	149, 314
NaeI	GCCGGC	1 cut(s)	281
NdeII	GATC	2 cut(s)	268, 521
NgoMIV	GCCGGC	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	632
NmeAIII	GCCGAG	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PdiI	GCCGGC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	290, 578, 625
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	521
RsaI	GTAC	3 cut(s)	23, 30, 608
RsaNI	GTAC	3 cut(s)	22, 29, 607
RseI	CAYNNNNRTG	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	209, 700
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	268, 521
SchI	GAGTC	1 cut(s)	550
SetI	ASST	4 cut(s)	59, 216, 424, 697
SfaNI	GCATC	3 cut(s)	304, 397, 607
SfuI	TTCGAA	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	669
Sse9I	AATT	3 cut(s)	469, 526, 643
SsiI	CCGC	4 cut(s)	5, 152, 156, 662
TaaI	ACNGT	2 cut(s)	21, 28
TaqI	TCGA	2 cut(s)	648, 681
TasI	AATT	3 cut(s)	469, 526, 643
TatI	WGTACW	2 cut(s)	21, 606
TfiI	GAWTC	3 cut(s)	290, 578, 625
Tru1I	TTAA	2 cut(s)	209, 700
Tru9I	TTAA	2 cut(s)	209, 700
TseI	GCWGC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	419
XapI	RAATTY	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.