Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Reverse (-)

5170689 .. 5172433

Gene Structure 1745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCGGGACTGCTAGCATGGGCAGCAGACGTAGTGGGAGGAGGTGGCGGGCAAGACAACGAACAAGACATCCCACTGATATTCACTCAGGACCAGCAGAAGTATGTCCTGGACTTGGATCACAAAGCATCTTCTCTCGGCCGTTCGATCCATGACCTCCGGCTCAGACTCCCTCCTTCCGACATCTCTCAGCGCCTCCCTGATCTCCACGCCCACTCCCTCGCTTCTAACGCCGCCCTTTCTCTCCAACTGAACTCCCATTCCACCACCCGCGAACAGTTCCCATTTTGTACTAATGCTGCATATGAAAGGGCTATATCCAATTGTGAAAGTAAAATACAGGAGAAAATTCAAGAGGTGGATTTGCTTAAGAGGAAGCTAATGGAGATGGACGAGAGTGAAAGGAATTTGAGAGATGAACTTGAAAATGCAGAAACCGCATTGGATGCCAGTGGATCTGGCCAATCAGATGAATCCACTGGTGACCCAAATGCGACAGTTGAAACTGAAAATGACGTAGAAGCTTCAAAGAAGGCTATACTTGAAAAGTTAGAGGAGAGGAAAAAAGACTTGAGTTCAATGGAAGTAGTAGTGAATGATTTAGAGGAAAGATGGGCAGAAATTCAAGATAATGCATTGAGTCAGCCTTTGCCAGTGCAAAGAGCGAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

24.85

Weight (kDa)

4.63

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	273
AciI	CCGC	5 cut(s)	5, 48, 234, 271, 438
AclWI	GGATC	3 cut(s)	126, 142, 463
AcoI	YGGCCR	2 cut(s)	139, 460
AcsI	RAATTY	3 cut(s)	348, 406, 621
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	7 cut(s)	353, 425, 503, 528, 545, 579, 626
AjnI	CCWGG	1 cut(s)	108
AloI	GAACNNNNNNTCC	4 cut(s)	54, 86, 245, 277
AluBI	AGCT	2 cut(s)	379, 524
AluI	AGCT	2 cut(s)	379, 524
AlwI	GGATC	3 cut(s)	126, 142, 463
AoxI	GGCC	2 cut(s)	139, 460
ApeKI	GCWGC	2 cut(s)	23, 299
ApoI	RAATTY	3 cut(s)	348, 406, 621
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	494
AsuNHI	GCTAGC	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	35, 286
BccI	CCATC	2 cut(s)	382, 606
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	110
BfaI	CTAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	196
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	24, 234, 300
BlsI	GCNGC	3 cut(s)	25, 235, 301
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	137, 436
BmtI	GCTAGC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	592
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	3 cut(s)	450, 484, 653
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	69, 451
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	3 cut(s)	101, 178, 203
BseNI	ACTGG	3 cut(s)	450, 484, 653
BseRI	GAGGAG	2 cut(s)	54, 569
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	35, 286
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	141, 462
BsiEI	CGRYCG	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	141, 462
Bsp143I	GATC	4 cut(s)	118, 147, 202, 455
BspACI	CCGC	5 cut(s)	5, 48, 234, 271, 438
BspANI	GGCC	2 cut(s)	141, 462
BspCNI	CTCAG	3 cut(s)	100, 177, 202
BspFNI	CGCG	1 cut(s)	273
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	3 cut(s)	126, 142, 463
BspTI	CTTAAG	1 cut(s)	368
BsrI	ACTGG	3 cut(s)	450, 484, 653
BssMI	GATC	4 cut(s)	118, 147, 202, 455
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	279, 499
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	15, 50
BstDEI	CTNAG	3 cut(s)	87, 164, 189
BstEII	GGTNACC	1 cut(s)	482
BstF5I	GGATG	2 cut(s)	69, 451
BstFNI	CGCG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	4 cut(s)	121, 150, 205, 458
BstMBI	GATC	4 cut(s)	118, 147, 202, 455
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 230, 437, 446
BstNI	CCWGG	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	35, 286
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BstZI	CGGCCG	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	141, 462
BtsCI	GGATG	2 cut(s)	69, 451
BtsIMutI	CAGTG	4 cut(s)	74, 457, 477, 660
Cac8I	GCNNGC	2 cut(s)	15, 50
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	2 cut(s)	18, 152
CviJI	RGCY	8 cut(s)	141, 163, 314, 379, 462, 524, 536, 646
CviKI_1	RGCY	8 cut(s)	141, 163, 314, 379, 462, 524, 536, 646
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	3 cut(s)	87, 164, 189
DpnI	GATC	4 cut(s)	120, 149, 204, 457
DpnII	GATC	4 cut(s)	118, 147, 202, 455
EaeI	YGGCCR	2 cut(s)	139, 460
EagI	CGGCCG	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	139
Eco91I	GGTNACC	1 cut(s)	482
EcoO65I	GGTNACC	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	637
FaeI	CATG	2 cut(s)	21, 155
FaiI	YATR	7 cut(s)	19, 105, 153, 304, 306, 317, 539
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	17, 151
FauI	CCCGC	2 cut(s)	41, 278
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	24, 234, 300
FokI	GGATG	2 cut(s)	56, 458
Fsp4HI	GCNGC	3 cut(s)	24, 234, 300
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	24, 234, 300
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	141, 462
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	21, 155
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	3 cut(s)	168, 473, 640
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	494
Hpy188I	TCNGA	3 cut(s)	167, 181, 469
Hpy188III	TCNNGA	3 cut(s)	89, 353, 626
HpyAV	CCTTC	2 cut(s)	186, 526
HpyCH4III	ACNGT	2 cut(s)	279, 499
HpyCH4IV	ACGT	2 cut(s)	30, 516
HpyCH4V	TGCA	4 cut(s)	302, 431, 635, 658
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 230, 437, 446
HpyF3I	CTNAG	3 cut(s)	87, 164, 189
HpySE526I	ACGT	2 cut(s)	30, 516
Hsp92II	CATG	2 cut(s)	21, 155
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	118, 147, 202, 455
Lsp1109I	GCAGC	2 cut(s)	35, 286
LweI	GCATC	2 cut(s)	137, 436
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	2 cut(s)	30, 516
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	4 cut(s)	120, 149, 204, 457
MboI	GATC	4 cut(s)	118, 147, 202, 455
MboII	GAAGA	1 cut(s)	123
MfeI	CAATTG	1 cut(s)	322
MflI	RGATCY	1 cut(s)	455
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	4 cut(s)	322, 348, 406, 621
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	162, 649
MmeI	TCCRAC	2 cut(s)	204, 271
Mox20I	TGGCCA	1 cut(s)	462
Mph1103I	ATGCAT	1 cut(s)	637
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	462
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	4 cut(s)	23, 230, 437, 446
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	4 cut(s)	118, 147, 202, 455
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	21, 155
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	482
NsiI	ATGCAT	1 cut(s)	637
PfeI	GAWTC	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	25, 235, 301
PleI	GAGTC	2 cut(s)	162, 648
PpsI	GAGTC	2 cut(s)	162, 648
Psp6I	CCWGG	1 cut(s)	108
PspEI	GGTNACC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	455
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	24, 234, 300
Sau3AI	GATC	4 cut(s)	118, 147, 202, 455
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	2 cut(s)	162, 649
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	7 cut(s)	33, 46, 159, 360, 381, 519, 526
SfaNI	GCATC	2 cut(s)	137, 436
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	368, 571
SmoI	CTYRAG	2 cut(s)	368, 571
Sse9I	AATT	4 cut(s)	322, 348, 406, 621
SsiI	CCGC	5 cut(s)	5, 48, 234, 271, 438
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	279, 499
TaiI	ACGT	2 cut(s)	33, 519
TaqI	TCGA	1 cut(s)	146
TasI	AATT	4 cut(s)	322, 348, 406, 621
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	4 cut(s)	81, 457, 484, 660
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	2 cut(s)	23, 299
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	321, 432, 486
TspRI	CASTG	4 cut(s)	81, 457, 484, 660
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	3 cut(s)	348, 406, 621
XspI	CTAG	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.