Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Reverse (-)

5290856 .. 5293175

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATAGTTCTGAAACCGCGACACTGGCTATGCCTTGCCAACCAAATAGTGAGAGAGAGAGGAAGAGAGATGGCGGGACTGCTAGCATGGGCAGCAGACGTAGTGGGAGGAGGTGGCGGGCAAGACAACGAACAAGACATCCCACTGATATTCACTCAGGACCAGCAGAGGTATGTCCTGGACTTGGATCACAAAGCATCTTCTCTCGGCCGTTCGATCCATGACCTCCGGCTCAGACTCCCTCCTTCCGACATCTCCGAGCGCCTCCCTGATCTCCACGCCCACTCCCTCGCTTCCAACGCCGCCCTTGCTCTCCAGTTGAACTCCCATTCCACCACCCGCGAACAGGCACAGTTGAGAGAGGTGACATTGCAGGAAGAGAATGCTGCATATGAAAGGGCTATATCCAATTGTGAAAGTAAAATACAGGAGAAAATTCACGAAGCAGATTTGCTTAAGAGGAAGCTAATGGAGATGGATGAGAGTGAAAGGAATTTGAGAGATGAGCTTGAAAATGCAGAAACCGCATTGGATGCCAGTCGATCTGGCCATTCAGATGAATCCACTGGTGACCCAAATGCGACAATTGAAACTGAAAATGACGTAGAAGCTTCAAAGAAGGCTATACTTGAAAAGTTAGAGGAGAGGAAAAAAGAATTGAGTTCAATGGAAGCAGTAGTGAATGATTTAGAGGAAAGATGGGCAGAAAGTCAAGAAAATGCATTGAGTCAGCCTTCGCCAGTGCAAAGAGAGAAGATTTTGGATAAACAACTTCACAGCGTAATTGAGCAGCTAGAAGCAAAACAGGCACAAGCAGAAGGCCTGGTCAATGAATTTCATTTGAAAGAGATGGAGCTAGAAAGATTGAATGCGTTGTGGAGGAATCTTGAAAGTAGCAACATAGAAATGAATACTGCTAGAAATAGGTTTGGACGAAGCGCATCAGGAAATGGATCGATCACCACCACCTTTTGCTTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

36.88

Weight (kDa)

5.0

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	19, 342
AciI	CCGC	6 cut(s)	17, 74, 117, 303, 340, 525
AclWI	GGATC	3 cut(s)	195, 211, 961
AcoI	YGGCCR	2 cut(s)	208, 547
AcsI	RAATTY	3 cut(s)	435, 493, 833
AfiI	CCNNNNNNNGG	2 cut(s)	184, 346
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	9 cut(s)	322, 512, 590, 615, 632, 666, 844, 868, 890
AjnI	CCWGG	2 cut(s)	177, 822
AloI	GAACNNNNNNTCC	4 cut(s)	123, 155, 314, 346
AluBI	AGCT	5 cut(s)	466, 508, 611, 793, 856
AluI	AGCT	5 cut(s)	466, 508, 611, 793, 856
AlwI	GGATC	3 cut(s)	195, 211, 961
AoxI	GGCC	3 cut(s)	208, 547, 820
ApeKI	GCWGC	3 cut(s)	92, 386, 790
ApoI	RAATTY	3 cut(s)	435, 493, 833
AspLEI	GCGC	2 cut(s)	264, 941
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	3 cut(s)	376, 581, 952
AsuNHI	GCTAGC	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	104, 373, 802
BccI	CCATC	4 cut(s)	64, 469, 693, 844
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	2 cut(s)	179, 824
BfaI	CTAG	4 cut(s)	83, 794, 857, 918
BfoI	RGCGCY	1 cut(s)	265
BfrI	CTTAAG	1 cut(s)	455
BisI	GCNGC	4 cut(s)	93, 303, 387, 791
BlsI	GCNGC	4 cut(s)	94, 304, 388, 792
Bme1390I	CCNGG	2 cut(s)	179, 824
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	179, 824
BmsI	GCATC	3 cut(s)	206, 523, 950
BmtI	GCTAGC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	956
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 346
Bse1I	ACTGG	5 cut(s)	29, 316, 537, 571, 740
Bse3DI	GCAATG	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	179, 824
BseCI	ATCGAT	1 cut(s)	956
BseGI	GGATG	3 cut(s)	138, 484, 538
BseLI	CCNNNNNNNGG	2 cut(s)	184, 346
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	170, 247
BseNI	ACTGG	5 cut(s)	29, 316, 537, 571, 740
BseRI	GAGGAG	2 cut(s)	123, 656
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	104, 373, 802
Bsh1236I	CGCG	2 cut(s)	19, 342
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	3 cut(s)	210, 549, 822
BshVI	ATCGAT	1 cut(s)	956
BsiEI	CGRYCG	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	184, 346
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	2 cut(s)	388, 874
BsnI	GGCC	3 cut(s)	210, 549, 822
Bsp143I	GATC	6 cut(s)	187, 216, 271, 542, 953, 957
BspACI	CCGC	6 cut(s)	17, 74, 117, 303, 340, 525
BspANI	GGCC	3 cut(s)	210, 549, 822
BspCNI	CTCAG	2 cut(s)	169, 246
BspDI	ATCGAT	1 cut(s)	956
BspFNI	CGCG	2 cut(s)	19, 342
BspOI	GCTAGC	1 cut(s)	86
BspPI	GGATC	3 cut(s)	195, 211, 961
BspTI	CTTAAG	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	368
BsrI	ACTGG	5 cut(s)	29, 316, 537, 571, 740
BssMI	GATC	6 cut(s)	187, 216, 271, 542, 953, 957
Bst2UI	CCWGG	2 cut(s)	179, 824
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	2 cut(s)	58, 372
BstAFI	CTTAAG	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	84, 119
BstDEI	CTNAG	2 cut(s)	156, 233
BstEII	GGTNACC	1 cut(s)	569
BstF5I	GGATG	3 cut(s)	138, 484, 538
BstFNI	CGCG	2 cut(s)	19, 342
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	264, 941
BstKTI	GATC	6 cut(s)	190, 219, 274, 545, 956, 960
BstMBI	GATC	6 cut(s)	187, 216, 271, 542, 953, 957
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 92, 299, 308, 524, 533, 806
BstNI	CCWGG	2 cut(s)	179, 824
BstPI	GGTNACC	1 cut(s)	569
BstSCI	CCNGG	2 cut(s)	177, 822
BstUI	CGCG	2 cut(s)	19, 342
BstV1I	GCAGC	3 cut(s)	104, 373, 802
BstZI	CGGCCG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	956
BsuRI	GGCC	3 cut(s)	210, 549, 822
BsuTUI	ATCGAT	1 cut(s)	956
BtsCI	GGATG	3 cut(s)	138, 484, 538
BtsIMutI	CAGTG	4 cut(s)	22, 143, 564, 747
Cac8I	GCNNGC	2 cut(s)	84, 119
CfoI	GCGC	2 cut(s)	264, 941
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	956
CviAII	CATG	2 cut(s)	87, 221
DdeI	CTNAG	2 cut(s)	156, 233
DpnI	GATC	6 cut(s)	189, 218, 273, 544, 955, 959
DpnII	GATC	6 cut(s)	187, 216, 271, 542, 953, 957
EaeI	YGGCCR	2 cut(s)	208, 547
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	58, 372
EarI	CTCTTC	2 cut(s)	58, 372
EclXI	CGGCCG	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	822
Eco47I	GGWCC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	208
Eco91I	GGTNACC	1 cut(s)	569
EcoO65I	GGTNACC	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	177, 822
EcoT22I	ATGCAT	1 cut(s)	724
FaeI	CATG	2 cut(s)	90, 224
FaiI	YATR	9 cut(s)	31, 88, 174, 222, 391, 393, 404, 626, 902
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	86, 220
FauI	CCCGC	3 cut(s)	67, 110, 347
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	4 cut(s)	93, 303, 387, 791
FokI	GGATG	3 cut(s)	125, 491, 545
Fsp4HI	GCNGC	4 cut(s)	93, 303, 387, 791
FspBI	CTAG	4 cut(s)	83, 794, 857, 918
GlaI	GCGC	2 cut(s)	263, 940
GluI	GCNGC	4 cut(s)	93, 303, 387, 791
GsuI	CTGGAG	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	3 cut(s)	210, 549, 822
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	2 cut(s)	264, 941
Hin1II	CATG	2 cut(s)	90, 224
Hin6I	GCGC	2 cut(s)	262, 939
HinP1I	GCGC	2 cut(s)	262, 939
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	4 cut(s)	237, 560, 727, 883
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	3 cut(s)	376, 581, 952
Hpy188I	TCNGA	6 cut(s)	12, 236, 250, 259, 556, 983
Hpy188III	TCNNGA	5 cut(s)	158, 440, 713, 887, 945
HpyAV	CCTTC	4 cut(s)	255, 613, 744, 812
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	2 cut(s)	99, 603
HpyCH4V	TGCA	5 cut(s)	373, 389, 518, 722, 745
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 92, 299, 308, 524, 533, 806
HpyF3I	CTNAG	2 cut(s)	156, 233
HpySE526I	ACGT	2 cut(s)	99, 603
Hsp92II	CATG	2 cut(s)	90, 224
HspAI	GCGC	2 cut(s)	262, 939
Kzo9I	GATC	6 cut(s)	187, 216, 271, 542, 953, 957
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	3 cut(s)	104, 373, 802
LweI	GCATC	3 cut(s)	206, 523, 950
MaeI	CTAG	4 cut(s)	83, 794, 857, 918
MaeII	ACGT	2 cut(s)	99, 603
MaeIII	GTNAC	2 cut(s)	364, 569
MalI	GATC	6 cut(s)	189, 218, 273, 544, 955, 959
MboI	GATC	6 cut(s)	187, 216, 271, 542, 953, 957
MboII	GAAGA	4 cut(s)	75, 192, 389, 766
MfeI	CAATTG	2 cut(s)	409, 585
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	7 cut(s)	409, 435, 493, 585, 656, 783, 833
MluNI	TGGCCA	1 cut(s)	549
MlyI	GAGTC	2 cut(s)	231, 736
MmeI	TCCRAC	2 cut(s)	273, 321
Mox20I	TGGCCA	1 cut(s)	549
Mph1103I	ATGCAT	1 cut(s)	724
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	2 cut(s)	555, 905
Msp20I	TGGCCA	1 cut(s)	549
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	2 cut(s)	179, 824
MunI	CAATTG	2 cut(s)	409, 585
Mva1269I	GAATGC	2 cut(s)	388, 874
MvaI	CCWGG	2 cut(s)	179, 824
MvnI	CGCG	2 cut(s)	19, 342
MwoI	GCNNNNNNNGC	7 cut(s)	25, 92, 299, 308, 524, 533, 806
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	6 cut(s)	187, 216, 271, 542, 953, 957
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	90, 224
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	364, 569
NsiI	ATGCAT	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	822
PctI	GAATGC	2 cut(s)	388, 874
PfeI	GAWTC	2 cut(s)	560, 883
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	4 cut(s)	94, 304, 388, 792
PleI	GAGTC	2 cut(s)	231, 735
PpsI	GAGTC	2 cut(s)	231, 735
Psp6I	CCWGG	2 cut(s)	177, 822
PspEI	GGTNACC	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	177, 822
PspPI	GGNCC	1 cut(s)	160
RseI	CAYNNNNRTG	2 cut(s)	555, 905
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	4 cut(s)	93, 303, 387, 791
Sau3AI	GATC	6 cut(s)	187, 216, 271, 542, 953, 957
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	231, 736
ScrFI	CCNGG	2 cut(s)	179, 824
SfaNI	GCATC	3 cut(s)	206, 523, 950
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	555, 905
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	7 cut(s)	409, 435, 493, 585, 656, 783, 833
SseBI	AGGCCT	1 cut(s)	822
SsiI	CCGC	6 cut(s)	17, 74, 117, 303, 340, 525
SspMI	CTAG	4 cut(s)	83, 794, 857, 918
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	2 cut(s)	177, 822
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	2 cut(s)	102, 606
TaqI	TCGA	3 cut(s)	215, 541, 956
TasI	AATT	7 cut(s)	409, 435, 493, 585, 656, 783, 833
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	560, 883
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	4 cut(s)	29, 150, 571, 747
TseFI	GTSAC	2 cut(s)	364, 569
TseI	GCWGC	3 cut(s)	92, 386, 790
Tsp45I	GTSAC	2 cut(s)	364, 569
TspDTI	ATGAA	5 cut(s)	408, 573, 827, 846, 923
TspRI	CASTG	4 cut(s)	29, 150, 571, 747
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	3 cut(s)	435, 493, 833
XspI	CTAG	4 cut(s)	83, 794, 857, 918
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.