Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006534

Physical Location & Seq

Genomic Coordinates Forward (+)

8008871 .. 8010538

Gene Structure 1668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGACAAATAACATGTGTCCGTGTTTCGTACACACTGAAAAACCGCAAAAAAGTAATCACGAATTCAATTCAGAAACAACCGATCCGGTTCAAAAACAATTTATTCCTCTTTTTGTATACTTTTCCGGGTCAAAAACCTTTTTTAATTTTCCCTCCAAATCTTTTAACAAGTCAAATCAAATGCAGCTCCATTTCTCTCCACTCCCACCTACTCTCCTTCTCTCTCTATTTATTCAGATCATGAAAGCCTTCGCCTTCCCATCTCTCTTCTTCCCTCCCCAAATCTTCAACCTCTTCCCTTTCTGCAGCCCGAAATCCATGGCCTCCTTCAAGCCCTCCATTCCCCCCACCAGTGACTCTTCTACCTCCGGCGAGGTCCACGTCATCATGGGTCCCATGTTCGCCGGCAAAACCACCGCCCTACTCCGCCGGATCAAGTCGGAGGGAAACAGCGGCAGGAACGTGGCGATGATAAAATCGAGTAAGGATACGAGATACGCCATCGATTCGGTTGTGACTCATGATGGGGTGAAGTTTCCGTGCTGGGCACTGCCTAATCTGTCGTCGTTTCGGCAGAATTTTGGTGGAGATGCTTATGACAAGCTTGATGTTATTGGTATCGATGAGGCTCAGTTTTTTGAAGATCTGTACGATTTCTGCTGCACGGCTGCTGATCACGATGGAAAAACTGTAATTGTTGCAGGCTTGGATGGTGATTACTTGAGGAGGAGCTTTGGCTCGGTGCTTGACGTAATACCACTTGCTGATTCTGTGACCAAGTTGACGGCTCGATGTGAAATGTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACGGAGGAGACCAGGACAGAACTGATTGGCGGAGCTGATGTCTACATGCCTGTGTGTCGCCAACATTATGTCAACGGACAAGTTCTCATTAAAACTGCAAGAAGTGTAGTGGAGTCCCATATATTTAAGAGTGTGAGTGACACATTTTCTGAAGCAACTCCAGTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

335

Amino Acids

37.23

Weight (kDa)

8.03

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	124 - 301	4.4e-53	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07800
fragaria_vesca	FvH4_4g05640 FvH4_6g41260
malus_domestica	MD06G1090400.v1.1 MD09G1121200.v1.1 MD09G1181000.v1.1 MD11G1248000.v1.1 MD17G1112200.v1.1
prunus_persica	Prupe.3G202500_v2.0.a1 Prupe.3G202500_v2.0.a1
pyrus_communis	pycom06g08620 pycom09g04560 pycom09g09840 pycom17g10390
rosa_chinensis	RchiOBHm_Chr2g0156811
rosa_laevigata	RLG00000020944
rosa_multiflora	Rmu_co8442271.1_g000002 Rmu_sc0022865.1_g000002 Rmu_ssc0000286.1_g000021
rosa_roxburghii	Rroxscaffold_2G00092700
rosa_rugosa	Rorug02G0456300
rosa_samantha	Rh2AG522000 Rh2BG535400 Rh2CG506900 Rh2DG544400
rosa_wichuraiana	Rw2G043100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	117, 876
AciI	CCGC	5 cut(s)	44, 417, 427, 453, 864
AclWI	GGATC	2 cut(s)	77, 440
AcsI	RAATTY	2 cut(s)	62, 577
AcuI	CTGAAG	1 cut(s)	1005
AfaI	GTAC	2 cut(s)	30, 650
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	5 cut(s)	67, 92, 289, 331, 641
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	845
AluBI	AGCT	5 cut(s)	187, 604, 732, 815, 869
AluI	AGCT	5 cut(s)	187, 604, 732, 815, 869
Alw26I	GTCTC	1 cut(s)	836
AlwI	GGATC	2 cut(s)	77, 440
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	4 cut(s)	184, 306, 660, 668
ApoI	RAATTY	2 cut(s)	62, 577
Asp700I	GAANNNNTTC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	376, 392
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	541, 725
AvaII	GGWCC	2 cut(s)	376, 392
AxyI	CCTNAGG	1 cut(s)	827
BaeGI	GKGCMC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	839
BbvI	GCAGC	4 cut(s)	196, 318, 647, 655
BccI	CCATC	5 cut(s)	268, 509, 518, 674, 704
BceAI	ACGGC	2 cut(s)	681, 801
BciT130I	CCWGG	1 cut(s)	847
BciVI	GTATCC	1 cut(s)	481
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	836
BfmI	CTRYAG	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	481
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	5 cut(s)	185, 307, 454, 661, 669
BlsI	GCNGC	5 cut(s)	186, 308, 455, 662, 670
Bme1390I	CCNGG	2 cut(s)	127, 847
Bme18I	GGWCC	2 cut(s)	376, 392
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	376, 392
BmiI	GGNNCC	2 cut(s)	393, 394
BmrFI	CCNGG	2 cut(s)	127, 847
BmsI	GCATC	1 cut(s)	580
BpiI	GAAGAC	1 cut(s)	839
BpmI	CTGGAG	1 cut(s)	978
BpuEI	CTTGAG	1 cut(s)	742
BpuMI	CCSGG	1 cut(s)	127
Bsa29I	ATCGAT	2 cut(s)	504, 621
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 858, 888
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	351, 995
Bse21I	CCTNAGG	1 cut(s)	827
BseBI	CCWGG	1 cut(s)	847
BseCI	ATCGAT	2 cut(s)	504, 621
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	715
BseMII	CTCAG	2 cut(s)	644, 818
BseNI	ACTGG	2 cut(s)	351, 995
BseRI	GAGGAG	3 cut(s)	739, 742, 854
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	4 cut(s)	196, 318, 647, 655
BseYI	CCCAGC	1 cut(s)	543
BsgI	GTGCAG	1 cut(s)	646
BshFI	GGCC	1 cut(s)	323
BshVI	ATCGAT	2 cut(s)	504, 621
BsiSI	CCGG	5 cut(s)	86, 126, 369, 405, 430
BslFI	GGGAC	2 cut(s)	378, 934
BsmAI	GTCTC	1 cut(s)	836
BsmFI	GGGAC	2 cut(s)	378, 934
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	836
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	5 cut(s)	82, 237, 432, 643, 673
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	5 cut(s)	44, 417, 427, 453, 864
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	2 cut(s)	643, 819
BspDI	ATCGAT	2 cut(s)	504, 621
BspHI	TCATGA	2 cut(s)	240, 520
BspLI	GGNNCC	2 cut(s)	393, 394
BspMAI	CTGCAG	1 cut(s)	308
BspPI	GGATC	2 cut(s)	77, 440
BspTNI	GGTCTC	1 cut(s)	836
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	351, 995
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	5 cut(s)	82, 237, 432, 643, 673
BssNAI	GTATAC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	318
Bst1107I	GTATAC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	1 cut(s)	691
Bst6I	CTCTTC	3 cut(s)	272, 299, 364
BstC8I	GCNNGC	2 cut(s)	406, 703
BstDEI	CTNAG	2 cut(s)	630, 827
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	715
BstKTI	GATC	5 cut(s)	85, 240, 435, 646, 676
BstMAI	GTCTC	1 cut(s)	836
BstMBI	GATC	5 cut(s)	82, 237, 432, 643, 673
BstNI	CCWGG	1 cut(s)	847
BstNSI	RCATGY	2 cut(s)	16, 883
BstSCI	CCNGG	2 cut(s)	125, 845
BstSFI	CTRYAG	1 cut(s)	304
BstSLI	GKGCMC	1 cut(s)	550
BstV1I	GCAGC	4 cut(s)	196, 318, 647, 655
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BstZ17I	GTATAC	1 cut(s)	118
Bsu15I	ATCGAT	2 cut(s)	504, 621
Bsu36I	CCTNAGG	1 cut(s)	827
BsuI	GTATCC	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	323
BsuTUI	ATCGAT	2 cut(s)	504, 621
BtgI	CCRYGG	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	482
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	3 cut(s)	33, 358, 548
Cac8I	GCNNGC	2 cut(s)	406, 703
CciI	TCATGA	2 cut(s)	240, 520
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	376, 392
ClaI	ATCGAT	2 cut(s)	504, 621
Csp6I	GTAC	2 cut(s)	29, 649
CviAII	CATG	7 cut(s)	13, 241, 319, 388, 397, 521, 880
CviQI	GTAC	2 cut(s)	29, 649
DdeI	CTNAG	2 cut(s)	630, 827
DpnI	GATC	5 cut(s)	84, 239, 434, 645, 675
DpnII	GATC	5 cut(s)	82, 237, 432, 643, 673
Eam1104I	CTCTTC	3 cut(s)	272, 299, 364
EarI	CTCTTC	3 cut(s)	272, 299, 364
EciI	GGCGGA	2 cut(s)	416, 879
Eco130I	CCWWGG	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	836
Eco47I	GGWCC	2 cut(s)	376, 392
Eco57I	CTGAAG	1 cut(s)	1005
Eco81I	CCTNAGG	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	845
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	7 cut(s)	16, 244, 322, 391, 400, 524, 883
FaqI	GGGAC	2 cut(s)	378, 934
FatI	CATG	7 cut(s)	12, 240, 318, 387, 396, 520, 879
FbaI	TGATCA	1 cut(s)	673
FblI	GTMKAC	2 cut(s)	117, 876
Fnu4HI	GCNGC	5 cut(s)	185, 307, 454, 661, 669
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	5 cut(s)	185, 307, 454, 661, 669
GluI	GCNGC	5 cut(s)	185, 307, 454, 661, 669
GsaI	CCCAGC	1 cut(s)	547
GsuI	CTGGAG	1 cut(s)	978
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	5 cut(s)	86, 126, 369, 405, 430
Hin1II	CATG	7 cut(s)	16, 244, 322, 391, 400, 524, 883
HincII	GTYRAC	2 cut(s)	783, 907
HindII	GTYRAC	2 cut(s)	783, 907
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	5 cut(s)	356, 506, 517, 767, 947
HpaII	CCGG	5 cut(s)	86, 126, 369, 405, 430
HphI	GGTGA	2 cut(s)	541, 725
Hpy166II	GTNNAC	6 cut(s)	31, 118, 379, 783, 877, 907
Hpy188I	TCNGA	4 cut(s)	73, 237, 442, 985
Hpy188III	TCNNGA	4 cut(s)	59, 241, 521, 677
Hpy8I	GTNNAC	6 cut(s)	31, 118, 379, 783, 877, 907
Hpy99I	CGWCG	1 cut(s)	568
HpyAV	CCTTC	4 cut(s)	227, 259, 265, 337
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	3 cut(s)	381, 462, 750
HpyCH4V	TGCA	5 cut(s)	184, 306, 663, 701, 932
HpyF3I	CTNAG	2 cut(s)	630, 827
HpySE526I	ACGT	3 cut(s)	381, 462, 750
Hsp92II	CATG	7 cut(s)	16, 244, 322, 391, 400, 524, 883
KflI	GGGWCCC	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	404
KroNI	GCCGGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	5 cut(s)	82, 237, 432, 643, 673
LmnI	GCTCC	3 cut(s)	192, 729, 866
Lsp1109I	GCAGC	4 cut(s)	196, 318, 647, 655
LweI	GCATC	1 cut(s)	580
MaeII	ACGT	3 cut(s)	381, 462, 750
MaeIII	GTNAC	4 cut(s)	353, 514, 772, 971
MalI	GATC	5 cut(s)	84, 239, 434, 645, 675
MboI	GATC	5 cut(s)	82, 237, 432, 643, 673
MboII	GAAGA	7 cut(s)	259, 262, 277, 286, 351, 653, 844
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	6 cut(s)	62, 67, 98, 145, 577, 693
MlyI	GAGTC	3 cut(s)	350, 511, 956
MmeI	TCCRAC	1 cut(s)	420
MroNI	GCCGGC	1 cut(s)	404
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	4 cut(s)	144, 165, 924, 960
MslI	CAYNNNNRTG	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	453
MspI	CCGG	5 cut(s)	86, 126, 369, 405, 430
MspR9I	CCNGG	2 cut(s)	127, 847
MvaI	CCWGG	1 cut(s)	847
NaeI	GCCGGC	1 cut(s)	406
NciI	CCSGG	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	5 cut(s)	82, 237, 432, 643, 673
NgoMIV	GCCGGC	1 cut(s)	404
NlaIII	CATG	7 cut(s)	16, 244, 322, 391, 400, 524, 883
NlaIV	GGNNCC	2 cut(s)	393, 394
NmuCI	GTSAC	4 cut(s)	353, 514, 772, 971
NspI	RCATGY	2 cut(s)	16, 883
PagI	TCATGA	2 cut(s)	240, 520
PciI	ACATGT	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	506, 767
PkrI	GCNGC	5 cut(s)	186, 308, 455, 662, 670
PleI	GAGTC	3 cut(s)	350, 511, 955
PpsI	GAGTC	3 cut(s)	350, 511, 955
PpuMI	RGGWCCY	1 cut(s)	392
PscI	ACATGT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	845
PspFI	CCCAGC	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	2 cut(s)	393, 394
PspPI	GGNCC	2 cut(s)	376, 392
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	2 cut(s)	30, 650
RsaNI	GTAC	2 cut(s)	29, 649
RseI	CAYNNNNRTG	1 cut(s)	884
SaqAI	TTAA	4 cut(s)	144, 165, 924, 960
SatI	GCNGC	5 cut(s)	185, 307, 454, 661, 669
Sau3AI	GATC	5 cut(s)	82, 237, 432, 643, 673
Sau96I	GGNCC	2 cut(s)	376, 392
SchI	GAGTC	3 cut(s)	350, 511, 956
ScrFI	CCNGG	2 cut(s)	127, 847
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	2 cut(s)	376, 392
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	1 cut(s)	721
SmoI	CTYRAG	1 cut(s)	721
Sse9I	AATT	6 cut(s)	62, 67, 98, 145, 577, 693
SsiI	CCGC	5 cut(s)	44, 417, 427, 453, 864
StyD4I	CCNGG	2 cut(s)	125, 845
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	3 cut(s)	384, 465, 753
TaqI	TCGA	4 cut(s)	479, 504, 621, 790
TasI	AATT	6 cut(s)	62, 67, 98, 145, 577, 693
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	506, 767
Tru1I	TTAA	4 cut(s)	144, 165, 924, 960
Tru9I	TTAA	4 cut(s)	144, 165, 924, 960
TscAI	CASTG	3 cut(s)	40, 358, 555
TseFI	GTSAC	4 cut(s)	353, 514, 772, 971
TseI	GCWGC	4 cut(s)	184, 306, 660, 668
Tsp45I	GTSAC	4 cut(s)	353, 514, 772, 971
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	4 cut(s)	9, 528, 851, 924
TspRI	CASTG	3 cut(s)	40, 358, 555
VpaK11BI	GGWCC	2 cut(s)	376, 392
XapI	RAATTY	2 cut(s)	62, 577
XceI	RCATGY	2 cut(s)	16, 883
XmiI	GTMKAC	2 cut(s)	117, 876
XmnI	GAANNNNTTC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.