Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Forward (+)

14843247 .. 14845733

Gene Structure 2487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTGTGATCCTGAGAAGGAGAATCTCTCCTTGTATGGATATCCTAGTGAGCAGTGGGAAGTCAACCTACCTGCTGAAGAAGTGCCTCCAGAATTGCCAGAGCCTGCTCTGGGTATCAACTTTGCAAGAGATGGCATGGCAGAAAAAGACTGGCTATCTTTGGTTGCTGTTCATAGTGATGCCTGGCTAGTTTCTGTTGCCTTCTACTTTGGTGCCAGATTTGGGTTCGACAAGGCTGACAGGAAGCGACTTTTTAATATGATTAATGAACTGCCAACAATATTTGAAGTCGTGACCGGTACTGCAAAAAAACAAGTAAAGGAGAAGTCATCTTCAAATCATGGCAGCAACAAATCCAAGTCAAGCTCCAAAGCGCGAGGGTCCGAATCTCAAGGAAGACATTCGGAAGTATTGCAGCCTAAAGACGAAGACGAGGGCTTGGATGAAGAGGAGGAGGATGAACGTGAAGAGACATGTGGAGCATGTGGTGGAGGCGGACCATCCTCTTTGGACGAACCCTGGATTTTCTGTGATTTTTGTGAGACGTGGTTCCACATGAAGTGCGTGAAGATGACCCCTGCACGAGCAAAACAGATCAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGAGCCCGGCCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

216

Amino Acids

24.13

Weight (kDa)

5.05

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	1 - 99	1.5e-52	Alfin
PHD	PF00628	159 - 207	1.6e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	212
AccII	CGCG	1 cut(s)	376
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	1 cut(s)	2
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	2 cut(s)	301, 605
AfiI	CCNNNNNNNGG	2 cut(s)	110, 222
AflIII	ACRYGT	1 cut(s)	473
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	287, 336
AjiI	CACGTC	1 cut(s)	546
AjnI	CCWGG	2 cut(s)	182, 518
AluBI	AGCT	1 cut(s)	366
AluI	AGCT	1 cut(s)	366
Alw26I	GTCTC	2 cut(s)	464, 536
AlwI	GGATC	1 cut(s)	2
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	638
ApeKI	GCWGC	3 cut(s)	345, 415, 621
AseI	ATTAAT	1 cut(s)	264
AsiGI	ACCGGT	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	400
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	2 cut(s)	381, 497
AsuC2I	CCSGG	1 cut(s)	637
AvaII	GGWCC	2 cut(s)	381, 497
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	637
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	2 cut(s)	403, 435
BbvI	GCAGC	3 cut(s)	357, 427, 633
BccI	CCATC	2 cut(s)	125, 508
BciT130I	CCWGG	2 cut(s)	184, 520
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	464, 536
BfaI	CTAG	2 cut(s)	45, 188
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	346, 416, 622
BlsI	GCNGC	3 cut(s)	347, 417, 623
Bme1390I	CCNGG	3 cut(s)	184, 520, 637
Bme18I	GGWCC	2 cut(s)	381, 497
BmgBI	CACGTC	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	381, 497
BmiI	GGNNCC	3 cut(s)	214, 382, 551
BmrFI	CCNGG	3 cut(s)	184, 520, 637
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	2 cut(s)	403, 435
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	637
BsaJI	CCNNGG	1 cut(s)	518
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 222
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	184, 520
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	3 cut(s)	448, 463, 500
BseLI	CCNNNNNNNGG	2 cut(s)	110, 222
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	2 cut(s)	464, 467
BseXI	GCAGC	3 cut(s)	357, 427, 633
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	1 cut(s)	640
BshNI	GGYRCC	1 cut(s)	212
BshTI	ACCGGT	1 cut(s)	296
BsiSI	CCGG	2 cut(s)	297, 637
BslI	CCNNNNNNNGG	2 cut(s)	110, 222
BsmAI	GTCTC	2 cut(s)	464, 536
BsmBI	CGTCTC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	2 cut(s)	7, 594
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	640
BspCNI	CTCAG	1 cut(s)	4
BspFNI	CGCG	1 cut(s)	376
BspLI	GGNNCC	3 cut(s)	214, 382, 551
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	2 cut(s)	7, 594
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	184, 520
Bst6I	CTCTTC	2 cut(s)	441, 462
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	448, 463, 500
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	2 cut(s)	10, 597
BstMAI	GTCTC	2 cut(s)	464, 536
BstMBI	GATC	2 cut(s)	7, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	2 cut(s)	184, 520
BstNSI	RCATGY	2 cut(s)	477, 486
BstSCI	CCNGG	3 cut(s)	182, 518, 635
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	357, 427, 633
BstV2I	GAAGAC	2 cut(s)	403, 435
BsuRI	GGCC	1 cut(s)	640
BtrI	CACGTC	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	448, 463, 500
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	381, 497
Csp6I	GTAC	2 cut(s)	300, 604
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	6 cut(s)	136, 341, 474, 483, 556, 618
CviJI	RGCY	9 cut(s)	103, 154, 187, 236, 366, 418, 438, 635, 640
CviKI_1	RGCY	9 cut(s)	103, 154, 187, 236, 366, 418, 438, 635, 640
CviQI	GTAC	2 cut(s)	300, 604
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	9, 596
DpnII	GATC	2 cut(s)	7, 594
Eam1104I	CTCTTC	2 cut(s)	441, 462
EarI	CTCTTC	2 cut(s)	441, 462
EciI	GGCGGA	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	637
Eco32I	GATATC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	381, 497
Eco57I	CTGAAG	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	182, 518
EcoRV	GATATC	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	637
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	6 cut(s)	139, 344, 477, 486, 559, 621
FaiI	YATR	9 cut(s)	36, 137, 174, 260, 342, 475, 484, 557, 619
FatI	CATG	6 cut(s)	135, 340, 473, 482, 555, 617
Fnu4HI	GCNGC	3 cut(s)	346, 416, 622
FokI	GGATG	3 cut(s)	455, 470, 487
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	3 cut(s)	346, 416, 622
FspBI	CTAG	2 cut(s)	45, 188
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	3 cut(s)	346, 416, 622
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	640
HapII	CCGG	2 cut(s)	297, 637
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	6 cut(s)	139, 344, 477, 486, 559, 621
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	22, 386
HpaII	CCGG	2 cut(s)	297, 637
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	385, 406
Hpy188III	TCNNGA	3 cut(s)	11, 89, 292
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	10, 211, 624
HpyCH4IV	ACGT	2 cut(s)	463, 545
HpyCH4V	TGCA	5 cut(s)	125, 305, 415, 581, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	2 cut(s)	463, 545
Hsp92II	CATG	6 cut(s)	139, 344, 477, 486, 559, 621
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	7, 594
LmnI	GCTCC	2 cut(s)	371, 479
Lsp1109I	GCAGC	3 cut(s)	357, 427, 633
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	45, 188
MaeII	ACGT	2 cut(s)	463, 545
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	9, 596
MboI	GATC	2 cut(s)	7, 594
MboII	GAAGA	7 cut(s)	89, 324, 408, 440, 458, 479, 580
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	8 cut(s)	96, 371, 427, 442, 445, 448, 485, 514
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	3 cut(s)	255, 264, 646
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	2 cut(s)	297, 637
MspR9I	CCNGG	3 cut(s)	184, 520, 637
MvaI	CCWGG	2 cut(s)	184, 520
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	618
NciI	CCSGG	1 cut(s)	637
NdeII	GATC	2 cut(s)	7, 594
NlaIII	CATG	6 cut(s)	139, 344, 477, 486, 559, 621
NlaIV	GGNNCC	3 cut(s)	214, 382, 551
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	2 cut(s)	477, 486
PciI	ACATGT	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	22, 386
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	347, 417, 623
PscI	ACATGT	1 cut(s)	473
PshBI	ATTAAT	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	182, 518
PspGI	CCWGG	2 cut(s)	182, 518
PspN4I	GGNNCC	3 cut(s)	214, 382, 551
PspPI	GGNCC	2 cut(s)	381, 497
PstNI	CAGNNNCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	301, 605
RsaNI	GTAC	2 cut(s)	300, 604
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	255, 264, 646
SatI	GCNGC	3 cut(s)	346, 416, 622
Sau3AI	GATC	2 cut(s)	7, 594
Sau96I	GGNCC	2 cut(s)	381, 497
ScrFI	CCNGG	3 cut(s)	184, 520, 637
SduI	GDGCHC	1 cut(s)	637
SetI	ASST	5 cut(s)	69, 73, 368, 466, 548
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	381, 497
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	495
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	45, 188
StyD4I	CCNGG	3 cut(s)	182, 518, 635
TaiI	ACGT	2 cut(s)	466, 548
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	2 cut(s)	22, 386
Tru1I	TTAA	3 cut(s)	255, 264, 646
Tru9I	TTAA	3 cut(s)	255, 264, 646
TscAI	CASTG	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	3 cut(s)	345, 415, 621
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	6 cut(s)	161, 282, 459, 474, 572, 606
TspRI	CASTG	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	381, 497
VspI	ATTAAT	1 cut(s)	264
XceI	RCATGY	2 cut(s)	477, 486
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	2 cut(s)	45, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.