Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Reverse (-)

15372138 .. 15382685

Gene Structure 10548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

ATGGGCCCACAAAGTAGTGGGAAGAGCACATTATTAAATCATTTATTTGCTACCAACTTTCGCGAGATGGATGCTTTTAGAGGAAGGTCACAAACAACTAAAGGTATTTGGGCTGCAAAATGCACTGGCATTGAGCCTTGCACTCTTGTAATGGATTTAGAGGGTACCGATGGAAGAGAACGAGGAGAGGATGATACTGCGTTCGAGAAGCAGAGTGCCCTCTTTGCTCTTGCTGTTTCAGATATAGTGCTCATAAACATGTGGTGCCATGATATTGGCCGTGAGCAAGCTGCAAACAAGCCTCTCCTGAAGACTGTGTTCCAAGTGATGATGCGATTATTTAGTCCACGTAAAACAACTCTGATGTTTGTCATCCGTGATAAAACAAGGACACCATTGGAAAATTTAGAACCTGTTCTTAGAGAAGACATTCAGAAGATATGGGACTCTGTTCCTAAGCCTGAAGCCCACAGGGAAACTCCACTAAGTGAATTTTTTAATGTTGAGGTTGTAGCTCTTTCAAGTTATGAAGAAAAAGAAGAGCAATTTAAGGAGCAGGTTACTAGCTTGAGACAGAGATTTTATCATTCTATTGCACCCGGTGGTCTTGCTGGAGACCGACGGGGGGTAGTTCCTGCTTCAGGGTTTTCGTTTAGTACACAACAGATATGGAAAGTCATCAAAGAAAACAAAGATCTTGATCTTCCAGCCCACAAGGTCATGGTGGCTACTGTACGTTGTGAAGAAATTGCAAATGAGAAGTATGCTGCTTTTGCAGGAAATGAGGAGTGGAATGAGTTGAATGAGGCTGTTCAGTCTGGTCCTATTTCTGGCGTTGGGAAGAAGCTCAATTCAATCCTTGACACTTGTCTTTCAGAGTATGATGCAGAGGCTACGTATTTTGATGAAGGTGTTAGAACTGGGAAGCGCAAGCAGCTTGAAGAAAAATTGCTGCAACTTGTACAACCTGCGTTCCAAGCTTTGCTGGGACATATAAGATCTGGTACTCTGGATAAGTTCAAGGAAGCATTTGATAAGGCCTTGAGTGGTGGGGAGGGATTTTCAGCGGCTGCTCATAATTGCTCTGAGTCCTTTATGGCTCGGTTTGATGAAGGATGTTCAGATGCTGTTATCACACTAGCAAACTGGGACACATCTAAAGTAAGGGATAAGCTTAAACGTGATATAGAAGCCCATATTGCTTCAGTTCATGCTGCTAAGCTATCTGAACTTACTGCTCTTTATGAGGGAAAGTTGAAGAATGCATTGTCAGCACCAGCAGAAGCTCTTCTAGATGGTGCTAATAGTGAGACCTGGCCCTCAATAAGAAAACTTTTCCGGCGTGAGACAGAATCAGCTGTCTCTGGGCTCTCTAGTGCACTTTCCGGTTTTGATATGGATGAACAAGCTAAGGGCCAAATACTTGCAAATCTAGAGGCATATGCAAGAGGTGTGGTAGAAGCGAAAACAAAGGAAGAGGCTGGAAGGGTTTTGATTCGTATGAAGGACAGGTTTATGACATTATTTAGCCATGATTCTGATTCAATGCCACGTGTGTGGACTGGGAAGGAAGATATTAGAGCAATTACCAAAACCGCTCGTTCTGCTTCTTTAAAATTGCTTTCTGTTATGGCCGCAATCCGTTTGGATGACGATGACGTTGATAATATTGCGAATACTTTGTCCCTTGCCTTGGTGGATTCCACAAATGCTGCTGTTAAAGATAGGAGTATCACAGCGGCTGACCCACTGGCTTCAAGCACTTGGCAAGAGATTTCAGCATCAAAAACATTGATCACACCTGTCCAGTGCAAATCTTTGTGGAGGCAATTCAAAGCAGAGACCGAGTACAGTGTTTCTCAGGCTATTTCTGCACAGGAAGCTAACAAGCGTAATAACAACTGGCTGCCACCTCCATGGGCAATTGTTGCCTTGATAATCCTGGGATTCAATGAATTTATGACACTTTTAAGAAATCCTTTGTATCTGTGTGTCATCTTTGTGGGATTTTTACTCGTTAAAGCCCTATGGGTGCAGCTAGACATTGCGGGTGAATTCCGTAATGGTGCTCTTCCCGGGCTTCTATGCTTGTCGACCAAGTTGGTTCCAACTATCATGAACATGATGAAAAGACTAGCAGAAGAAGGGGCAAAGCCTGCAGCTAATGATCCTCCGAGGAACCCTGCACTAGCATCAACAGGCTATAGGAATGAAGGGAGTTCTAGCAGTGAAATGTCATCGGAAGTGACAGAATCTGAATACTCCAGCCCCTCAAAACATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

762

Amino Acids

84.18

Weight (kDa)

5.72

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RHD3_GTPase	PF05879	1 - 236	8.9e-117	Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Sey1_3HB	PF20428	278 - 715	1e-143	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	547, 976
Acc65I	GGTACC	1 cut(s)	164
AccB1I	GGYRCC	2 cut(s)	164, 264
AccBSI	CCGCTC	1 cut(s)	1598
AccI	GTMKAC	1 cut(s)	2093
AccII	CGCG	1 cut(s)	63
AciI	CCGC	5 cut(s)	1067, 1596, 1635, 1739, 2048
AclWI	GGATC	1 cut(s)	2162
AcoI	YGGCCR	2 cut(s)	277, 1632
AcsI	RAATTY	4 cut(s)	403, 491, 1955, 2054
AcuI	CTGAAG	4 cut(s)	329, 483, 624, 1188
AcvI	CACGTG	1 cut(s)	1553
AdeI	CACNNNGTG	2 cut(s)	488, 602
AfaI	GTAC	6 cut(s)	166, 658, 735, 963, 1006, 1850
AfiI	CCNNNNNNNGG	4 cut(s)	625, 641, 830, 1693
AflIII	ACRYGT	2 cut(s)	258, 1552
AjnI	CCWGG	2 cut(s)	1313, 1941
AleI	CACNNNNGTG	1 cut(s)	1555
Alw21I	GWGCWC	4 cut(s)	29, 252, 1381, 2071
Alw26I	GTCTC	6 cut(s)	565, 609, 1304, 1340, 1366, 1835
Alw44I	GTGCAC	1 cut(s)	1377
AlwI	GGATC	1 cut(s)	2162
AlwNI	CAGNNNCTG	4 cut(s)	1070, 1127, 1742, 2255
Ama87I	CYCGRG	1 cut(s)	2075
AoxI	GGCC	6 cut(s)	4, 277, 1038, 1316, 1414, 1632
ApaI	GGGCCC	1 cut(s)	8
ApaLI	GTGCAC	1 cut(s)	1377
ApoI	RAATTY	4 cut(s)	403, 491, 1955, 2054
ArsI	GACNNNNNNTTYG	2 cut(s)	1667, 1699
Asp700I	GAANNNNTTC	3 cut(s)	414, 429, 1287
Asp718I	GGTACC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	930
AspS9I	GGNCC	5 cut(s)	4, 5, 821, 1317, 1414
AsuC2I	CCSGG	3 cut(s)	600, 2076, 2077
AsuHPI	GGTGA	1 cut(s)	2063
AvaI	CYCGRG	1 cut(s)	2075
AvaII	GGWCC	1 cut(s)	821
BaeGI	GKGCMC	3 cut(s)	8, 220, 1381
BanI	GGYRCC	2 cut(s)	164, 264
BanII	GRGCYC	2 cut(s)	8, 1371
BbrPI	CACGTG	1 cut(s)	1553
BbsI	GAAGAC	2 cut(s)	317, 432
Bbv12I	GWGCWC	4 cut(s)	29, 252, 1381, 2071
BccI	CCATC	3 cut(s)	61, 164, 1289
BceAI	ACGGC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	2 cut(s)	1315, 1943
BclI	TGATCA	1 cut(s)	1794
BcnI	CCSGG	3 cut(s)	600, 2076, 2077
BcoDI	GTCTC	6 cut(s)	565, 609, 1304, 1340, 1366, 1835
BfmI	CTRYAG	2 cut(s)	2157, 2203
BfuAI	ACCTGC	2 cut(s)	547, 976
BglII	AGATCT	2 cut(s)	694, 998
BlpI	GCTNAGC	1 cut(s)	1218
Bme1390I	CCNGG	5 cut(s)	600, 1315, 1943, 2076, 2077
Bme18I	GGWCC	1 cut(s)	821
BmeT110I	CYCGRG	1 cut(s)	2075
BmgT120I	GGNCC	5 cut(s)	4, 5, 821, 1317, 1414
BmiI	GGNNCC	5 cut(s)	6, 166, 266, 2106, 2180
BmrFI	CCNGG	5 cut(s)	600, 1315, 1943, 2076, 2077
BmrI	ACTGGG	3 cut(s)	930, 1156, 1572
BmsI	GCATC	6 cut(s)	61, 321, 874, 1114, 1790, 2201
BmuI	ACTGGG	3 cut(s)	930, 1156, 1572
BoxI	GACNNNNGTC	1 cut(s)	867
BpiI	GAAGAC	2 cut(s)	317, 432
BpmI	CTGGAG	2 cut(s)	633, 2248
Bpu10I	CCTNAGC	2 cut(s)	456, 1410
Bpu1102I	GCTNAGC	1 cut(s)	1218
BpuEI	CTTGAG	2 cut(s)	589, 1063
BpuMI	CCSGG	3 cut(s)	600, 2076, 2077
BsaAI	YACGTR	3 cut(s)	350, 897, 1553
BsaBI	GATNNNNATC	1 cut(s)	699
BsaI	GGTCTC	3 cut(s)	609, 1304, 1835
BsaJI	CCNNGG	5 cut(s)	1692, 1916, 1942, 2075, 2174
BsaWI	WCCGGW	1 cut(s)	1385
Bsc4I	CCNNNNNNNGG	4 cut(s)	625, 641, 830, 1693
Bse1I	ACTGG	7 cut(s)	130, 925, 1151, 1567, 1755, 1807, 1907
Bse3DI	GCAATG	1 cut(s)	2043
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	1315, 1943
BseDI	CCNNGG	5 cut(s)	1692, 1916, 1942, 2075, 2174
BseGI	GGATG	6 cut(s)	76, 196, 372, 1121, 1405, 1654
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	4 cut(s)	625, 641, 830, 1693
BseMI	GCAATG	1 cut(s)	2043
BseMII	CTCAG	2 cut(s)	1077, 1874
BseNI	ACTGG	7 cut(s)	130, 925, 1151, 1567, 1755, 1807, 1907
BseRI	GAGGAG	2 cut(s)	198, 800
BseSI	GKGCMC	3 cut(s)	8, 220, 1381
BseYI	CCCAGC	1 cut(s)	985
BsgI	GTGCAG	3 cut(s)	1857, 2054, 2169
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	6 cut(s)	6, 279, 1040, 1318, 1416, 1634
BshNI	GGYRCC	2 cut(s)	164, 264
BsiHKAI	GWGCWC	4 cut(s)	29, 252, 1381, 2071
BsiHKCI	CYCGRG	1 cut(s)	2075
BsiSI	CCGG	4 cut(s)	600, 1339, 1386, 2076
BslFI	GGGAC	4 cut(s)	458, 1002, 1163, 1669
BslI	CCNNNNNNNGG	4 cut(s)	625, 641, 830, 1693
BsmAI	GTCTC	6 cut(s)	565, 609, 1304, 1340, 1366, 1835
BsmFI	GGGAC	4 cut(s)	458, 1002, 1163, 1669
BsmI	GAATGC	1 cut(s)	1267
BsnI	GGCC	6 cut(s)	6, 279, 1040, 1318, 1416, 1634
Bso31I	GGTCTC	3 cut(s)	609, 1304, 1835
BsoBI	CYCGRG	1 cut(s)	2075
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	7 cut(s)	8, 29, 220, 252, 1371, 1381, 2071
Bsp1407I	TGTACA	1 cut(s)	961
Bsp143I	GATC	5 cut(s)	694, 700, 998, 1794, 2167
Bsp1720I	GCTNAGC	1 cut(s)	1218
Bsp19I	CCATGG	1 cut(s)	1916
Bsp68I	TCGCGA	1 cut(s)	63
BspACI	CCGC	5 cut(s)	1067, 1596, 1635, 1739, 2048
BspANI	GGCC	6 cut(s)	6, 279, 1040, 1318, 1416, 1634
BspCNI	CTCAG	2 cut(s)	1078, 1873
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	2115
BspLI	GGNNCC	5 cut(s)	6, 166, 266, 2106, 2180
BspMAI	CTGCAG	1 cut(s)	2161
BspMI	ACCTGC	2 cut(s)	547, 976
BspPI	GGATC	1 cut(s)	2162
BspQI	GCTCTTC	4 cut(s)	17, 534, 1293, 2076
BspT107I	GGYRCC	2 cut(s)	164, 264
BspTNI	GGTCTC	3 cut(s)	609, 1304, 1835
BsrBI	CCGCTC	1 cut(s)	1598
BsrDI	GCAATG	1 cut(s)	2043
BsrGI	TGTACA	1 cut(s)	961
BsrI	ACTGG	7 cut(s)	130, 925, 1151, 1567, 1755, 1807, 1907
BssECI	CCNNGG	5 cut(s)	1692, 1916, 1942, 2075, 2174
BssMI	GATC	5 cut(s)	694, 700, 998, 1794, 2167
BssT1I	CCWWGG	2 cut(s)	1692, 1916
Bst2UI	CCWGG	2 cut(s)	1315, 1943
Bst4CI	ACNGT	3 cut(s)	316, 733, 1853
Bst6I	CTCTTC	6 cut(s)	17, 169, 534, 1293, 1470, 2076
BstAPI	GCANNNNNTGC	2 cut(s)	1928, 2156
BstAUI	TGTACA	1 cut(s)	961
BstBAI	YACGTR	3 cut(s)	350, 897, 1553
BstC8I	GCNNGC	3 cut(s)	288, 932, 2157
BstDEI	CTNAG	7 cut(s)	419, 456, 485, 1086, 1218, 1410, 1860
BstDSI	CCRYGG	1 cut(s)	1916
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	6 cut(s)	76, 196, 372, 1121, 1405, 1654
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	930
BstKTI	GATC	5 cut(s)	697, 703, 1001, 1797, 2170
BstMAI	GTCTC	6 cut(s)	565, 609, 1304, 1340, 1366, 1835
BstMBI	GATC	5 cut(s)	694, 700, 998, 1794, 2167
BstNI	CCWGG	2 cut(s)	1315, 1943
BstNSI	RCATGY	1 cut(s)	262
BstPAI	GACNNNNGTC	1 cut(s)	867
BstSCI	CCNGG	5 cut(s)	598, 1313, 1941, 2074, 2075
BstSFI	CTRYAG	2 cut(s)	2157, 2203
BstSLI	GKGCMC	3 cut(s)	8, 220, 1381
BstSNI	TACGTA	1 cut(s)	897
BstUI	CGCG	1 cut(s)	63
BstV2I	GAAGAC	2 cut(s)	317, 432
BstX2I	RGATCY	2 cut(s)	694, 998
BstXI	CCANNNNNNTGG	3 cut(s)	275, 1557, 1917
BstYI	RGATCY	2 cut(s)	694, 998
BsuRI	GGCC	6 cut(s)	6, 279, 1040, 1318, 1416, 1634
BtgI	CCRYGG	1 cut(s)	1916
BtsCI	GGATG	6 cut(s)	76, 196, 372, 1121, 1405, 1654
BtsI	GCAGTG	1 cut(s)	2233
BtsIMutI	CAGTG	5 cut(s)	123, 1748, 1814, 1858, 2233
BtuMI	TCGCGA	1 cut(s)	63
BveI	ACCTGC	2 cut(s)	547, 976
Cac8I	GCNNGC	3 cut(s)	288, 932, 2157
CaiI	CAGNNNCTG	4 cut(s)	1070, 1127, 1742, 2255
CciI	TCATGA	1 cut(s)	2115
CfoI	GCGC	1 cut(s)	930
Cfr13I	GGNCC	5 cut(s)	4, 5, 821, 1317, 1414
Cfr9I	CCCGGG	1 cut(s)	2075
Csp6I	GTAC	6 cut(s)	165, 657, 734, 962, 1005, 1849
CspCI	CAANNNNNGTGG	2 cut(s)	1434, 1469
CviAII	CATG	8 cut(s)	259, 269, 721, 1211, 1532, 1917, 2116, 2122
CviQI	GTAC	6 cut(s)	165, 657, 734, 962, 1005, 1849
DdeI	CTNAG	7 cut(s)	419, 456, 485, 1086, 1218, 1410, 1860
DpnI	GATC	5 cut(s)	696, 702, 1000, 1796, 2169
DpnII	GATC	5 cut(s)	694, 700, 998, 1794, 2167
DraI	TTTAAA	1 cut(s)	1614
DraIII	CACNNNGTG	2 cut(s)	488, 602
EaeI	YGGCCR	2 cut(s)	277, 1632
Eam1104I	CTCTTC	6 cut(s)	17, 169, 534, 1293, 1470, 2076
EarI	CTCTTC	6 cut(s)	17, 169, 534, 1293, 1470, 2076
Eco105I	TACGTA	1 cut(s)	897
Eco130I	CCWWGG	2 cut(s)	1692, 1916
Eco147I	AGGCCT	1 cut(s)	1040
Eco24I	GRGCYC	2 cut(s)	8, 1371
Eco31I	GGTCTC	3 cut(s)	609, 1304, 1835
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	4 cut(s)	329, 483, 624, 1188
Eco72I	CACGTG	1 cut(s)	1553
Eco88I	CYCGRG	1 cut(s)	2075
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoRI	GAATTC	1 cut(s)	2054
EcoRII	CCWGG	2 cut(s)	1313, 1941
EcoT14I	CCWWGG	2 cut(s)	1692, 1916
EcoT22I	ATGCAT	1 cut(s)	1267
EcoT38I	GRGCYC	2 cut(s)	8, 1371
ErhI	CCWWGG	2 cut(s)	1692, 1916
FaeI	CATG	8 cut(s)	262, 272, 724, 1214, 1535, 1920, 2119, 2125
FalI	AAGNNNNNCTT	2 cut(s)	1963, 1995
FaqI	GGGAC	4 cut(s)	458, 1002, 1163, 1669
FatI	CATG	8 cut(s)	258, 268, 720, 1210, 1531, 1916, 2115, 2121
FauI	CCCGC	1 cut(s)	2041
FauNDI	CATATG	1 cut(s)	1441
FbaI	TGATCA	1 cut(s)	1794
FblI	GTMKAC	1 cut(s)	2093
FokI	GGATG	6 cut(s)	83, 203, 359, 1128, 1412, 1661
FriOI	GRGCYC	2 cut(s)	8, 1371
GlaI	GCGC	1 cut(s)	929
GsaI	CCCAGC	1 cut(s)	989
GsuI	CTGGAG	2 cut(s)	633, 2248
HaeIII	GGCC	6 cut(s)	6, 279, 1040, 1318, 1416, 1634
HapII	CCGG	4 cut(s)	600, 1339, 1386, 2076
HhaI	GCGC	1 cut(s)	930
Hin1II	CATG	8 cut(s)	262, 272, 724, 1214, 1535, 1920, 2119, 2125
Hin6I	GCGC	1 cut(s)	928
HinP1I	GCGC	1 cut(s)	928
HincII	GTYRAC	1 cut(s)	2094
HindII	GTYRAC	1 cut(s)	2094
HindIII	AAGCTT	2 cut(s)	978, 1172
HinfI	GANTC	9 cut(s)	446, 1088, 1352, 1495, 1535, 1541, 1700, 1947, 2252
HpaII	CCGG	4 cut(s)	600, 1339, 1386, 2076
HphI	GGTGA	1 cut(s)	2063
Hpy166II	GTNNAC	5 cut(s)	347, 659, 1379, 1560, 2094
Hpy188III	TCNNGA	8 cut(s)	62, 205, 307, 698, 1010, 1292, 1433, 2116
Hpy8I	GTNNAC	5 cut(s)	347, 659, 1379, 1560, 2094
Hpy99I	CGWCG	1 cut(s)	624
HpyAV	CCTTC	8 cut(s)	78, 902, 1106, 1479, 1498, 1561, 2138, 2207
HpyCH4III	ACNGT	3 cut(s)	316, 733, 1853
HpyCH4IV	ACGT	6 cut(s)	349, 736, 896, 1180, 1552, 1659
HpyF3I	CTNAG	7 cut(s)	419, 456, 485, 1086, 1218, 1410, 1860
HpySE526I	ACGT	6 cut(s)	349, 736, 896, 1180, 1552, 1659
Hsp92II	CATG	8 cut(s)	262, 272, 724, 1214, 1535, 1920, 2119, 2125
HspAI	GCGC	1 cut(s)	928
KpnI	GGTACC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	1794
Kzo9I	GATC	5 cut(s)	694, 700, 998, 1794, 2167
LguI	GCTCTTC	4 cut(s)	17, 534, 1293, 2076
LmnI	GCTCC	1 cut(s)	553
LweI	GCATC	6 cut(s)	61, 321, 874, 1114, 1790, 2201
MaeII	ACGT	6 cut(s)	349, 736, 896, 1180, 1552, 1659
MaeIII	GTNAC	3 cut(s)	87, 559, 2245
MalI	GATC	5 cut(s)	696, 702, 1000, 1796, 2169
MbiI	CCGCTC	1 cut(s)	1598
MboI	GATC	5 cut(s)	694, 700, 998, 1794, 2167
MfeI	CAATTG	1 cut(s)	1923
MflI	RGATCY	2 cut(s)	694, 998
MhlI	GDGCHC	7 cut(s)	8, 29, 220, 252, 1371, 1381, 2071
MlyI	GAGTC	2 cut(s)	440, 1097
MmeI	TCCRAC	1 cut(s)	2132
Mph1103I	ATGCAT	1 cut(s)	1267
MroXI	GAANNNNTTC	3 cut(s)	414, 429, 1287
MseI	TTAA	8 cut(s)	35, 498, 549, 1176, 1613, 1719, 1970, 2019
MslI	CAYNNNNRTG	5 cut(s)	257, 1555, 1915, 2000, 2120
MspA1I	CMGCKG	3 cut(s)	1067, 1358, 1739
MspI	CCGG	4 cut(s)	600, 1339, 1386, 2076
MspR9I	CCNGG	5 cut(s)	600, 1315, 1943, 2076, 2077
MunI	CAATTG	1 cut(s)	1923
Mva1269I	GAATGC	1 cut(s)	1267
MvaI	CCWGG	2 cut(s)	1315, 1943
MvnI	CGCG	1 cut(s)	63
NciI	CCSGG	3 cut(s)	600, 2076, 2077
NcoI	CCATGG	1 cut(s)	1916
NdeI	CATATG	1 cut(s)	1441
NdeII	GATC	5 cut(s)	694, 700, 998, 1794, 2167
NlaIII	CATG	8 cut(s)	262, 272, 724, 1214, 1535, 1920, 2119, 2125
NlaIV	GGNNCC	5 cut(s)	6, 166, 266, 2106, 2180
NmuCI	GTSAC	2 cut(s)	87, 2245
NruI	TCGCGA	1 cut(s)	63
NsiI	ATGCAT	1 cut(s)	1267
NspI	RCATGY	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	1555
PagI	TCATGA	1 cut(s)	2115
PceI	AGGCCT	1 cut(s)	1040
PciI	ACATGT	1 cut(s)	258
PciSI	GCTCTTC	4 cut(s)	17, 534, 1293, 2076
PctI	GAATGC	1 cut(s)	1267
PdmI	GAANNNNTTC	3 cut(s)	414, 429, 1287
PfeI	GAWTC	7 cut(s)	1352, 1495, 1535, 1541, 1700, 1947, 2252
PleI	GAGTC	2 cut(s)	440, 1096
PmaCI	CACGTG	1 cut(s)	1553
PmlI	CACGTG	1 cut(s)	1553
PpsI	GAGTC	2 cut(s)	440, 1096
Ppu21I	YACGTR	3 cut(s)	350, 897, 1553
PscI	ACATGT	1 cut(s)	258
PshAI	GACNNNNGTC	1 cut(s)	867
Psp6I	CCWGG	2 cut(s)	1313, 1941
PspCI	CACGTG	1 cut(s)	1553
PspFI	CCCAGC	1 cut(s)	985
PspGI	CCWGG	2 cut(s)	1313, 1941
PspN4I	GGNNCC	5 cut(s)	6, 166, 266, 2106, 2180
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	5 cut(s)	4, 5, 821, 1317, 1414
PstI	CTGCAG	1 cut(s)	2161
PstNI	CAGNNNCTG	4 cut(s)	1070, 1127, 1742, 2255
PsuI	RGATCY	2 cut(s)	694, 998
PvuII	CAGCTG	1 cut(s)	1358
RruI	TCGCGA	1 cut(s)	63
RsaI	GTAC	6 cut(s)	166, 658, 735, 963, 1006, 1850
RsaNI	GTAC	6 cut(s)	165, 657, 734, 962, 1005, 1849
RseI	CAYNNNNRTG	5 cut(s)	257, 1555, 1915, 2000, 2120
SalI	GTCGAC	1 cut(s)	2092
SapI	GCTCTTC	4 cut(s)	17, 534, 1293, 2076
SaqAI	TTAA	8 cut(s)	35, 498, 549, 1176, 1613, 1719, 1970, 2019
Sau3AI	GATC	5 cut(s)	694, 700, 998, 1794, 2167
Sau96I	GGNCC	5 cut(s)	4, 5, 821, 1317, 1414
SchI	GAGTC	2 cut(s)	440, 1097
ScrFI	CCNGG	5 cut(s)	600, 1315, 1943, 2076, 2077
SduI	GDGCHC	7 cut(s)	8, 29, 220, 252, 1371, 1381, 2071
SfaNI	GCATC	6 cut(s)	61, 321, 874, 1114, 1790, 2201
SfcI	CTRYAG	2 cut(s)	2157, 2203
SinI	GGWCC	1 cut(s)	821
SmaI	CCCGGG	1 cut(s)	2077
SmiMI	CAYNNNNRTG	5 cut(s)	257, 1555, 1915, 2000, 2120
SmlI	CTYRAG	2 cut(s)	568, 1042
SmoI	CTYRAG	2 cut(s)	568, 1042
SnaBI	TACGTA	1 cut(s)	897
SseBI	AGGCCT	1 cut(s)	1040
SsiI	CCGC	5 cut(s)	1067, 1596, 1635, 1739, 2048
SspI	AATATT	1 cut(s)	1669
StuI	AGGCCT	1 cut(s)	1040
StyD4I	CCNGG	5 cut(s)	598, 1313, 1941, 2074, 2075
StyI	CCWWGG	2 cut(s)	1692, 1916
TaaI	ACNGT	3 cut(s)	316, 733, 1853
TaiI	ACGT	6 cut(s)	352, 739, 899, 1183, 1555, 1662
TaqI	TCGA	2 cut(s)	204, 2093
TaqII	GACCGA	2 cut(s)	633, 1859
TatI	WGTACW	3 cut(s)	656, 961, 1848
TauI	GCSGC	3 cut(s)	1070, 1637, 1742
TfiI	GAWTC	7 cut(s)	1352, 1495, 1535, 1541, 1700, 1947, 2252
Tru1I	TTAA	8 cut(s)	35, 498, 549, 1176, 1613, 1719, 1970, 2019
Tru9I	TTAA	8 cut(s)	35, 498, 549, 1176, 1613, 1719, 1970, 2019
TscAI	CASTG	5 cut(s)	130, 1755, 1814, 1858, 2233
TseFI	GTSAC	2 cut(s)	87, 2245
Tsp45I	GTSAC	2 cut(s)	87, 2245
TspGWI	ACGGA	3 cut(s)	365, 1631, 2048
TspMI	CCCGGG	1 cut(s)	2075
TspRI	CASTG	5 cut(s)	130, 1755, 1814, 1858, 2233
VneI	GTGCAC	1 cut(s)	1377
VpaK11BI	GGWCC	1 cut(s)	821
XagI	CCTNNNNNAGG	1 cut(s)	639
XapI	RAATTY	4 cut(s)	403, 491, 1955, 2054
XbaI	TCTAGA	2 cut(s)	1291, 1432
XceI	RCATGY	1 cut(s)	262
XmaI	CCCGGG	1 cut(s)	2075
XmiI	GTMKAC	1 cut(s)	2093
XmnI	GAANNNNTTC	3 cut(s)	414, 429, 1287
Zsp2I	ATGCAT	1 cut(s)	1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.