pycom17g24140

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006179
Physical Location & Seq
Forward (+)
22428490 .. 22428895
406 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 195 bp
ATGAATCTAGTCTTTCAAATTATATCCCGAGGAAATCGACTAACGATGTCAGAATACCTTCCTGAAGAAATTATTATCCAAATTCTTCTTAGGCTTCCCGTCAAACCTTTGATTCAGTTCACCTGTGTCTGCAGATCTTGGAACTCCATCATTAAACACACTAGCTTCATCAACAGACACCTCAACGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

65

Amino Acids

7.57

Weight (kDa)

9.84

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 56 3.4e-10 F-box-like
F-box PF00646 20 - 56 9.3e-11 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 186
AcsI RAATTY 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 84
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 27
ApoI RAATTY 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 27
BccI CCATC 1 cut(s) 155
BfaI CTAG 2 cut(s) 8, 162
BfmI CTRYAG 1 cut(s) 130
BglII AGATCT 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 27
BsoBI CYCGRG 1 cut(s) 27
Bsp143I GATC 1 cut(s) 134
BspMAI CTGCAG 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 89
BstKTI GATC 1 cut(s) 137
BstMBI GATC 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
CviJI RGCY 2 cut(s) 94, 165
CviKI_1 RGCY 2 cut(s) 94, 165
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 27
FaiI YATR 1 cut(s) 23
FspBI CTAG 2 cut(s) 8, 162
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 2 cut(s) 4, 112
HpaI GTTAAC 1 cut(s) 190
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 120, 190
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 27, 62
Hpy8I GTNNAC 2 cut(s) 120, 190
HpyAV CCTTC 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 186
KspAI GTTAAC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 134
LpnPI CCDG 2 cut(s) 75, 136
MaeI CTAG 2 cut(s) 8, 162
MaeII ACGT 1 cut(s) 186
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 2 cut(s) 77, 77
MflI RGATCY 1 cut(s) 134
MluCI AATT 3 cut(s) 18, 69, 81
MnlI CCTC 2 cut(s) 23, 191
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 2 cut(s) 153, 189
NdeII GATC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 4, 112
Psp1406I AACGTT 1 cut(s) 186
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 134
SaqAI TTAA 2 cut(s) 153, 189
Sau3AI GATC 1 cut(s) 134
SetI ASST 6 cut(s) 60, 109, 125, 167, 183, 189
SfcI CTRYAG 1 cut(s) 130
SgeI CNNG 8 cut(s) 20, 39, 41, 74, 110, 135, 150, 174
Sse9I AATT 3 cut(s) 18, 69, 81
SspMI CTAG 2 cut(s) 8, 162
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 37
TasI AATT 3 cut(s) 18, 69, 81
TfiI GAWTC 2 cut(s) 4, 112
Tru1I TTAA 2 cut(s) 153, 189
Tru9I TTAA 2 cut(s) 153, 189
TspDTI ATGAA 2 cut(s) 17, 157
XapI RAATTY 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 2 cut(s) 8, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.