Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002070

Physical Location & Seq

Genomic Coordinates Reverse (-)

23021128 .. 23022678

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTACTTTTCTCAGATATACTAATACTTCTGTTACTGGCTTTCAACTTAAGAATCCTCAAAACCCATTCTATCTCCATTCTCATTCTCAAACACGTACCCTCTCAACCCAAAAAAGACTTGTAACCCCAATGGCTGCTCTCAGCATTACCCCTACCACCAACATCTCACACACATTTAGAAAACTCAAGGACCAAGGCAAAGTGGCATTTATCCCCTACATCACCGCCGGCGATCGATCTTTCAACCACGGCTCAAGCGTACCATTCTCGGATCCAATACAAGACGGTCCAGTTATTCAAGCTTCAGCCACACGTTCCTTGGCTAGATGGACGAATTTCAACGCAATTATGTCAATGTTGAAGGAGGTGGTGCCACAATTGTCTTGTCCAATTGTTCTATTTTCGTACCTCAACCCGATTCTTAACCATGGTGTTGAAAAGTTCATGCACAAGATTATGGACGTTGGGGTACATGGGCTTGTGGTTCCAGACGCTCCATTTGAAGTGACAAAAAGTTTGAGACAAGAAGCTGTGAAAAATAAGATAGAGTTGGCTCTACTAACTACACCAACTACTCCAACGGATCGAATGAAAGACATTGTTGAAGCTTCAGAAGGGTTTGTATACCTTGTGAGCTCCGTGGGAGTTACCGGTGTACGTGAATCGGTGAATGAACAAGTTCCAACCCTTTTAAGGGAAATTAGAGAGGCGACAAGCAAGCCTGTGGCAGTTGGCTTTGGGCTATCAAAGCCTGAACACTTGAAGAAAGTAGCCGAGTGGGGAGCTGATGGTGTTATTGTTGGTAGTGCCATTGTGAAGGTGTTGGGTGAAGCTAAATGTCCCAAGGAAGGGTTAAGAGAACTTGAAACTTTCATCAAATCTTTGAAATCTGGGTTTGTTTTGGCAGTTCAGATTTGTTGGTTCTTCTCTGGTGATGGCACTGGTAGCGGTCAGCCTTTATGTCTGCCTTTTTGCTTAATGGGCTTTGGCTATCTTCACTTTATTGGGCTAGTTTTTTTTTTTTTTTTTTTTTTTTTAGGTATTAGGTCTTTCTCATACAATGAATTTGCATGTCCTTTTATCTTAGGAAAAAAAAAAATTTATAGCAAGGTGTATAATCTTTTCGAATTACGTATTGTTTATAATTTTGTAATCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

388

Amino Acids

43.04

Weight (kDa)

9.27

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	88 - 298	1.3e-70	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02610
fragaria_vesca	FvH4_6g10820 FvH4_6g10830
malus_domestica	MD17G1246800.v1.1
prunus_persica	Prupe.3G144200_v2.0.a1 Prupe.3G144300_v2.0.a1 Prupe.3G144400_v2.0.a1 Prupe.3G144500_v2.0.a1
pyrus_communis	pycom17g24810
rosa_chinensis	RchiOBHm_Chr1g0317261 RchiOBHm_Chr1g0325481 RchiOBHm_Chr3g0462061 RchiOBHm_Chr3g0462091 RchiOBHm_Chr5g0067051
rosa_laevigata	RLG00000013482 RLG00000024883 RLG00000030122
rosa_multiflora	Rmu_sc0007627.1_g000011 Rmu_sc0009268.1_g000017
rosa_roxburghii	Rroxscaffold_1G00014060 Rroxscaffold_6G00417740 Rroxscaffold_6G00417750
rosa_rugosa	Rorug03G0054600
rosa_samantha	Rh1AG067300 Rh1BG055800 Rh1CG068700 Rh1DG073600 Rh3AG113000 Rh3AG113100 Rh3BG116000 Rh3CG118700 Rh3CG118800 Rh3DG117800 Rh3DG117900 Rh5AG440900 Rh5BG458200 Rh5CG480000 Rh5DG473200
rosa_wichuraiana	Rw0G007850 Rw0G020470 Rw3G009530 Rw3G009540 Rw4G030480 Rw5G041210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1146
AccB1I	GGYRCC	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	2 cut(s)	228, 951
AclWI	GGATC	3 cut(s)	269, 282, 594
AcsI	RAATTY	3 cut(s)	337, 1067, 1101
AcuI	CTGAAG	2 cut(s)	291, 597
AfaI	GTAC	5 cut(s)	100, 264, 410, 474, 660
AfiI	CCNNNNNNNGG	4 cut(s)	696, 697, 851, 852
AflII	CTTAAG	1 cut(s)	50
AflIII	ACRYGT	2 cut(s)	95, 314
AgeI	ACCGGT	1 cut(s)	653
AluBI	AGCT	6 cut(s)	305, 533, 611, 639, 788, 836
AluI	AGCT	6 cut(s)	305, 533, 611, 639, 788, 836
Alw21I	GWGCWC	1 cut(s)	641
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	3 cut(s)	269, 282, 594
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	3 cut(s)	337, 1067, 1101
ArsI	GACNNNNNNTTYG	4 cut(s)	485, 502, 517, 534
AsiGI	ACCGGT	1 cut(s)	653
Asp700I	GAANNNNTTC	1 cut(s)	681
AspS9I	GGNCC	2 cut(s)	193, 290
AsuHPI	GGTGA	4 cut(s)	217, 682, 842, 947
AsuII	TTCGAA	1 cut(s)	1128
AvaII	GGWCC	2 cut(s)	193, 290
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	641
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	3 cut(s)	324, 785, 932
BceAI	ACGGC	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	2 cut(s)	327, 1013
BfrI	CTTAAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme18I	GGWCC	2 cut(s)	193, 290
BmgT120I	GGNCC	2 cut(s)	193, 290
BmiI	GGNNCC	3 cut(s)	276, 375, 489
Bpu14I	TTCGAA	1 cut(s)	1128
BpuEI	CTTGAG	2 cut(s)	173, 241
Bsa29I	ATCGAT	1 cut(s)	238
BsaAI	YACGTR	3 cut(s)	98, 662, 1136
BsaJI	CCNNGG	6 cut(s)	196, 250, 321, 430, 642, 846
BsaWI	WCCGGW	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	4 cut(s)	696, 697, 851, 852
Bse118I	RCCGGY	2 cut(s)	230, 653
Bse1I	ACTGG	3 cut(s)	43, 293, 949
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	6 cut(s)	196, 250, 321, 430, 642, 846
BseLI	CCNNNNNNNGG	4 cut(s)	696, 697, 851, 852
BseMII	CTCAG	2 cut(s)	28, 157
BseNI	ACTGG	3 cut(s)	43, 293, 949
BseXI	GCAGC	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	373
BshTI	ACCGGT	1 cut(s)	653
BshVI	ATCGAT	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	641
BsiSI	CCGG	2 cut(s)	231, 654
BslFI	GGGAC	1 cut(s)	828
BslI	CCNNNNNNNGG	4 cut(s)	696, 697, 851, 852
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	828
Bsp119I	TTCGAA	1 cut(s)	1128
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp143I	GATC	4 cut(s)	235, 239, 274, 586
Bsp19I	CCATGG	1 cut(s)	430
BspACI	CCGC	2 cut(s)	228, 951
BspCNI	CTCAG	2 cut(s)	27, 156
BspDI	ATCGAT	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	276, 375, 489
BspPI	GGATC	3 cut(s)	269, 282, 594
BspT104I	TTCGAA	1 cut(s)	1128
BspT107I	GGYRCC	1 cut(s)	373
BspTI	CTTAAG	1 cut(s)	50
BsrFI	RCCGGY	2 cut(s)	230, 653
BsrI	ACTGG	3 cut(s)	43, 293, 949
BssAI	RCCGGY	2 cut(s)	230, 653
BssECI	CCNNGG	6 cut(s)	196, 250, 321, 430, 642, 846
BssMI	GATC	4 cut(s)	235, 239, 274, 586
BssNAI	GTATAC	1 cut(s)	628
BssT1I	CCWWGG	4 cut(s)	196, 321, 430, 846
Bst1107I	GTATAC	1 cut(s)	628
Bst4CI	ACNGT	1 cut(s)	290
BstAFI	CTTAAG	1 cut(s)	50
BstBAI	YACGTR	3 cut(s)	98, 662, 1136
BstBI	TTCGAA	1 cut(s)	1128
BstC8I	GCNNGC	2 cut(s)	232, 722
BstDEI	CTNAG	3 cut(s)	14, 143, 1087
BstDSI	CCRYGG	3 cut(s)	250, 430, 642
BstKTI	GATC	4 cut(s)	238, 242, 277, 589
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	4 cut(s)	235, 239, 274, 586
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	3 cut(s)	751, 948, 984
BstNSI	RCATGY	1 cut(s)	1077
BstSNI	TACGTA	1 cut(s)	1136
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BstZ17I	GTATAC	1 cut(s)	628
Bsu15I	ATCGAT	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	238
BtgI	CCRYGG	3 cut(s)	250, 430, 642
BtsIMutI	CAGTG	1 cut(s)	942
Cac8I	GCNNGC	2 cut(s)	232, 722
Cfr10I	RCCGGY	2 cut(s)	230, 653
Cfr13I	GGNCC	2 cut(s)	193, 290
ClaI	ATCGAT	1 cut(s)	238
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	5 cut(s)	99, 263, 409, 473, 659
CspAI	ACCGGT	1 cut(s)	653
CviAII	CATG	4 cut(s)	431, 448, 476, 1074
CviQI	GTAC	5 cut(s)	99, 263, 409, 473, 659
DdeI	CTNAG	3 cut(s)	14, 143, 1087
DpnI	GATC	4 cut(s)	237, 241, 276, 588
DpnII	GATC	4 cut(s)	235, 239, 274, 586
Ecl136II	GAGCTC	1 cut(s)	639
Eco105I	TACGTA	1 cut(s)	1136
Eco130I	CCWWGG	4 cut(s)	196, 321, 430, 846
Eco24I	GRGCYC	1 cut(s)	641
Eco47I	GGWCC	2 cut(s)	193, 290
Eco53kI	GAGCTC	1 cut(s)	639
Eco57I	CTGAAG	2 cut(s)	291, 597
EcoICRI	GAGCTC	1 cut(s)	639
EcoT14I	CCWWGG	4 cut(s)	196, 321, 430, 846
EcoT38I	GRGCYC	1 cut(s)	641
ErhI	CCWWGG	4 cut(s)	196, 321, 430, 846
FaeI	CATG	4 cut(s)	434, 451, 479, 1077
FaqI	GGGAC	1 cut(s)	828
FatI	CATG	4 cut(s)	430, 447, 475, 1073
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	1 cut(s)	138
FriOI	GRGCYC	1 cut(s)	641
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	2 cut(s)	327, 1013
GluI	GCNGC	1 cut(s)	138
HapII	CCGG	2 cut(s)	231, 654
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	4 cut(s)	434, 451, 479, 1077
HindIII	AAGCTT	2 cut(s)	303, 609
HinfI	GANTC	3 cut(s)	55, 421, 665
HpaII	CCGG	2 cut(s)	231, 654
HphI	GGTGA	4 cut(s)	217, 682, 842, 947
Hpy166II	GTNNAC	2 cut(s)	628, 659
Hpy188I	TCNGA	4 cut(s)	17, 274, 616, 915
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	2 cut(s)	628, 659
HpyAV	CCTTC	4 cut(s)	358, 611, 814, 845
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	5 cut(s)	97, 316, 465, 661, 1135
HpyCH4V	TGCA	2 cut(s)	451, 1073
HpyF10VI	GCNNNNNNNGC	3 cut(s)	751, 948, 984
HpyF3I	CTNAG	3 cut(s)	14, 143, 1087
HpySE526I	ACGT	5 cut(s)	97, 316, 465, 661, 1135
Hsp92II	CATG	4 cut(s)	434, 451, 479, 1077
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	235, 239, 274, 586
LmnI	GCTCC	3 cut(s)	502, 644, 785
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	327, 1013
MaeII	ACGT	5 cut(s)	97, 316, 465, 661, 1135
MaeIII	GTNAC	4 cut(s)	34, 124, 508, 649
MalI	GATC	4 cut(s)	237, 241, 276, 588
MboI	GATC	4 cut(s)	235, 239, 274, 586
MboII	GAAGA	3 cut(s)	778, 919, 989
MfeI	CAATTG	2 cut(s)	380, 393
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	641
MluCI	AATT	9 cut(s)	337, 348, 380, 393, 702, 1067, 1101, 1130, 1147
MmeI	TCCRAC	2 cut(s)	605, 710
MnlI	CCTC	5 cut(s)	69, 113, 361, 422, 703
MreI	CGCCGGCG	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	681
MseI	TTAA	6 cut(s)	51, 426, 695, 857, 980, 1162
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	2 cut(s)	231, 654
MunI	CAATTG	2 cut(s)	380, 393
MwoI	GCNNNNNNNGC	3 cut(s)	751, 948, 984
NaeI	GCCGGC	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	4 cut(s)	235, 239, 274, 586
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	4 cut(s)	434, 451, 479, 1077
NlaIV	GGNNCC	3 cut(s)	276, 375, 489
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	1077
NspV	TTCGAA	1 cut(s)	1128
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	3 cut(s)	55, 421, 665
PinAI	ACCGGT	1 cut(s)	653
PkrI	GCNGC	1 cut(s)	139
Ple19I	CGATCG	1 cut(s)	238
Ppu21I	YACGTR	3 cut(s)	98, 662, 1136
PsiI	TTATAA	1 cut(s)	1146
Psp124BI	GAGCTC	1 cut(s)	641
PspN4I	GGNNCC	3 cut(s)	276, 375, 489
PspPI	GGNCC	2 cut(s)	193, 290
PsuI	RGATCY	1 cut(s)	274
PvuI	CGATCG	1 cut(s)	238
RsaI	GTAC	5 cut(s)	100, 264, 410, 474, 660
RsaNI	GTAC	5 cut(s)	99, 263, 409, 473, 659
SacI	GAGCTC	1 cut(s)	641
SaqAI	TTAA	6 cut(s)	51, 426, 695, 857, 980, 1162
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	4 cut(s)	235, 239, 274, 586
Sau96I	GGNCC	2 cut(s)	193, 290
SduI	GDGCHC	1 cut(s)	641
SfuI	TTCGAA	1 cut(s)	1128
SgrAI	CRCCGGYG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	193, 290
SmlI	CTYRAG	3 cut(s)	50, 188, 256
SmoI	CTYRAG	3 cut(s)	50, 188, 256
SnaBI	TACGTA	1 cut(s)	1136
Sse9I	AATT	9 cut(s)	337, 348, 380, 393, 702, 1067, 1101, 1130, 1147
SsiI	CCGC	2 cut(s)	228, 951
SspMI	CTAG	2 cut(s)	327, 1013
SstI	GAGCTC	1 cut(s)	641
StyI	CCWWGG	4 cut(s)	196, 321, 430, 846
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	5 cut(s)	100, 319, 468, 664, 1138
TaqI	TCGA	3 cut(s)	238, 589, 1128
TasI	AATT	9 cut(s)	337, 348, 380, 393, 702, 1067, 1101, 1130, 1147
TfiI	GAWTC	3 cut(s)	55, 421, 665
Tru1I	TTAA	6 cut(s)	51, 426, 695, 857, 980, 1162
Tru9I	TTAA	6 cut(s)	51, 426, 695, 857, 980, 1162
TscAI	CASTG	1 cut(s)	949
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	5 cut(s)	436, 608, 690, 865, 1080
TspGWI	ACGGA	2 cut(s)	599, 631
TspRI	CASTG	1 cut(s)	949
Vha464I	CTTAAG	1 cut(s)	50
VpaK11BI	GGWCC	2 cut(s)	193, 290
XapI	RAATTY	3 cut(s)	337, 1067, 1101
XceI	RCATGY	1 cut(s)	1077
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	627
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	2 cut(s)	327, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.