pycom17g25670

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002715
Physical Location & Seq
Reverse (-)
23788310 .. 23789433
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
ATGATTGCTTCAGATTCAAAGAATGGGAATGGGAATGGGAATGGGAATCAAGATGAATATGATCTTGCTAGGCCACTTCTCGTTGAGGTTGCATGGCCTGGAATGGAAGATAAGGAAACTGAACATGGCGAGACGCCCTTTATTGCAAGGCTTTTTAATAGCAGCAATGGTCCTAGTAAGTGTCTGGCAGAGCCTAGGGTCGTTAGGAAAATCAGATCTGTTTCTTGGATGACACCAATTCATGGCATTCTTCAGCCGCCAACAATTGCTTTTCTGTTGGCCATTGTCATTGGCATGATTCCCACCTTGAAATCTCTTGTTTTTGATGATGACCAAGTCCTTTCATTCCTCACAGATAACTTGGAAATTGTAGCTGAGGCCATGGTGCCTTCGGCTGTGCTTGTTCTTGGAGGAATGCTAGCTGAAGGTCCAAACGAATCCAATCTGGGAATGAGAACTACGATTGGGATTATTGTTGCAAGGCTTTTGGTACTTCCTTTAATTGGGATTGGTGTGGTTCTATTATCGGATAAATTGAACCTTTTGGTATCCGATGATCAATTGTATCGGTTTGTTCTTTTGCTGCAATACACCACACCTTCTGCCATATTGTTAGGAGCAGTTGCAAGCTTGAGGGGTTATGCAGTCAGAGAGGCTTCTGCTCTCCTCTTCTGGCAGCATATTGTTGCCGTCTTCTCCCTCTCGCTCTATTTAATTGTCTACTTCTACATTCTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

247

Amino Acids

26.82

Weight (kDa)

4.94

Isoelectric Point (pI)

24.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 68 - 238 3.2e-40 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 385
AccB7I CCANNNNNTGG 1 cut(s) 242
AccI GTMKAC 1 cut(s) 720
AciI CCGC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 279
AcuI CTGAAG 2 cut(s) 236, 444
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 2 cut(s) 242, 503
AgsI TTSAA 3 cut(s) 18, 310, 538
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 3 cut(s) 374, 422, 630
AluI AGCT 3 cut(s) 374, 422, 630
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 4 cut(s) 71, 95, 279, 378
ApeKI GCWGC 3 cut(s) 162, 583, 676
AspA2I CCTAGG 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 170, 428
AsuNHI GCTAGC 1 cut(s) 418
AvaII GGWCC 2 cut(s) 170, 428
AvrII CCTAGG 1 cut(s) 194
BalI TGGCCA 1 cut(s) 281
BanI GGYRCC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 685
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 174, 570, 688
BceAI ACGGC 1 cut(s) 674
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 1 cut(s) 559
BclI TGATCA 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 4 cut(s) 69, 174, 195, 419
BfuI GTATCC 1 cut(s) 559
BglII AGATCT 1 cut(s) 215
BisI GCNGC 4 cut(s) 163, 257, 584, 677
BlnI CCTAGG 1 cut(s) 194
BlsI GCNGC 4 cut(s) 164, 258, 585, 678
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 2 cut(s) 170, 428
BmgT120I GGNCC 2 cut(s) 170, 428
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 1 cut(s) 99
BmtI GCTAGC 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 685
Bpu10I CCTNAGC 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 652
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 194, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 503
Bse3DI GCAATG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 194, 381
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 242, 503
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 366
BseRI GAGGAG 1 cut(s) 656
BseXI GCAGC 3 cut(s) 174, 570, 688
BshFI GGCC 4 cut(s) 73, 97, 281, 380
BshNI GGYRCC 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 242, 503
BsmAI GTCTC 1 cut(s) 125
BsmBI CGTCTC 1 cut(s) 125
BsmI GAATGC 2 cut(s) 246, 420
BsnI GGCC 4 cut(s) 73, 97, 281, 380
Bsp143I GATC 3 cut(s) 61, 215, 556
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 1 cut(s) 257
BspANI GGCC 4 cut(s) 73, 97, 281, 380
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 387
BspOI GCTAGC 1 cut(s) 422
BspT107I GGYRCC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 194, 381
BssMI GATC 3 cut(s) 61, 215, 556
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 2 cut(s) 194, 381
Bst2UI CCWGG 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 674
BstACI GRCGYC 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 420, 628
BstDEI CTNAG 1 cut(s) 375
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 3 cut(s) 64, 218, 559
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 3 cut(s) 61, 215, 556
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 3 cut(s) 174, 570, 688
BstV2I GAAGAC 1 cut(s) 685
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuI GTATCC 1 cut(s) 559
BsuRI GGCC 4 cut(s) 73, 97, 281, 380
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 420, 628
Cfr13I GGNCC 2 cut(s) 170, 428
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 491
CviAII CATG 5 cut(s) 93, 125, 242, 295, 382
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 1 cut(s) 375
DpnI GATC 3 cut(s) 63, 217, 558
DpnII GATC 3 cut(s) 61, 215, 556
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
Eco130I CCWWGG 2 cut(s) 194, 381
Eco47I GGWCC 2 cut(s) 170, 428
Eco57I CTGAAG 2 cut(s) 236, 444
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 194, 381
ErhI CCWWGG 2 cut(s) 194, 381
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 5 cut(s) 96, 128, 245, 298, 385
FatI CATG 5 cut(s) 92, 124, 241, 294, 381
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 4 cut(s) 163, 257, 584, 677
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 4 cut(s) 163, 257, 584, 677
FspBI CTAG 4 cut(s) 69, 174, 195, 419
GluI GCNGC 4 cut(s) 163, 257, 584, 677
HaeIII GGCC 4 cut(s) 73, 97, 281, 380
HgaI GACGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 5 cut(s) 96, 128, 245, 298, 385
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 4 cut(s) 14, 46, 298, 437
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 5 cut(s) 13, 215, 529, 553, 650
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 721
HpyAV CCTTC 3 cut(s) 399, 419, 609
HpyCH4V TGCA 6 cut(s) 92, 146, 479, 586, 626, 644
HpyF3I CTNAG 1 cut(s) 375
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 5 cut(s) 96, 128, 245, 298, 385
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 3 cut(s) 61, 215, 556
LmnI GCTCC 1 cut(s) 617
LpnPI CCDG 5 cut(s) 84, 111, 170, 431, 658
Lsp1109I GCAGC 3 cut(s) 174, 570, 688
MaeI CTAG 4 cut(s) 69, 174, 195, 419
MalI GATC 3 cut(s) 63, 217, 558
MboI GATC 3 cut(s) 61, 215, 556
MboII GAAGA 4 cut(s) 119, 242, 661, 685
MfeI CAATTG 2 cut(s) 264, 560
MflI RGATCY 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 7 cut(s) 237, 264, 366, 501, 533, 560, 714
MluNI TGGCCA 1 cut(s) 281
MnlI CCTC 8 cut(s) 79, 359, 370, 404, 627, 646, 677, 710
Mox20I TGGCCA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 281
MseI TTAA 3 cut(s) 156, 500, 713
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 99
MunI CAATTG 2 cut(s) 264, 560
Mva1269I GAATGC 2 cut(s) 246, 420
MvaI CCWGG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 381
NdeII GATC 3 cut(s) 61, 215, 556
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 5 cut(s) 96, 128, 245, 298, 385
NlaIV GGNNCC 1 cut(s) 387
PctI GAATGC 2 cut(s) 246, 420
PfeI GAWTC 4 cut(s) 14, 46, 298, 437
PflFI GACNNNGTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 4 cut(s) 164, 258, 585, 678
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 2 cut(s) 170, 428
PsuI RGATCY 1 cut(s) 215
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 3 cut(s) 156, 500, 713
SatI GCNGC 4 cut(s) 163, 257, 584, 677
Sau3AI GATC 3 cut(s) 61, 215, 556
Sau96I GGNCC 2 cut(s) 170, 428
ScrFI CCNGG 1 cut(s) 99
SetI ASST 8 cut(s) 90, 308, 376, 424, 430, 543, 601, 632
SinI GGWCC 2 cut(s) 170, 428
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
Sse9I AATT 7 cut(s) 237, 264, 366, 501, 533, 560, 714
SsiI CCGC 1 cut(s) 257
SspMI CTAG 4 cut(s) 69, 174, 195, 419
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 2 cut(s) 194, 381
TasI AATT 7 cut(s) 237, 264, 366, 501, 533, 560, 714
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 4 cut(s) 14, 46, 298, 437
Tru1I TTAA 3 cut(s) 156, 500, 713
Tru9I TTAA 3 cut(s) 156, 500, 713
TseI GCWGC 3 cut(s) 162, 583, 676
TspDTI ATGAA 3 cut(s) 69, 230, 333
Tth111I GACNNNGTC 1 cut(s) 335
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 170, 428
XmaJI CCTAGG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 720
XspI CTAG 4 cut(s) 69, 174, 195, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.